ISBf12

  • Family IS1380
  • Group IS942
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Bacteroides fragilis
Bacteroides fragilis
DNA section
IS Length : 1593 bp

Ends


IR Length : 13/15

IRL : CCTTAATTCCGCAACACTATTATAAATTAAACTTTTTAAGTACCTGAGCA
IRR : CCTCAAATCCGCAACTAAGCCCTTGAACGTCCTTATTGCGTTTACACGTC

Insertion site


Left flankDirect repeatRight flankDR Length
AACATTTATATTTTATAGTTGTTTT5

DNA sequence

CCTTAATTCCGCAACACTATTATAAATTAAACTTTTTAAGTACCTGAGCAACAAAAAGTTGCTCAGGATTTTGCCATGTCAGAATTTTCACTTATCTTAG
TGTTGCAAAAAAAACAAGAGAATCCGACGATAGACATGGCGAAGATACAAATTAAATCTGAGAGACTCACTCCTTTTGGGGGATTATTTTCAATCATGGA
GCAATTTGACTCCACATTATCATCTGTAATCGACTCAACCCTCGGTCTAAGGTGTAGATCGTTCGGTTATCAGTACAGCGAAATCATCCGTTCTCTCATG
AGTATCTACTTCTGTAGCGGTTCATGTATTGAGGATGTCACTACTCATTTGATGAACCACCTCTCGCTTCATCCGACACTTCGCACTTGTAGCTCTGATA
CTATCCTCAGGGCGATAAAGGAGTTGACGCAAGAAAACATTTCATACACATCAGATATGGGCAAGACCTACGATTTCAATACGGCTGACACTCTCAATAC
TTTATTGCTCAATTGTATATTTGCATCTGGCCAACTGAAAGAGGGTGAGATGTATGATGTTGATTTCGACCATCAGTTCATAGAGACAGAGAAGTATGAT
GCAAAGCCTACATACAAGAAGTTCCTTGGTTATCGCCCTGGCGTGGCGGTTATTGGCGATTTGATAGTCGGTATAGAGAATAGCGATGGTAACACAAATG
TTCGTTTCCATCAGAAGGACACGCTGAAGAGGTTCTTTGCGAGATTTGAACAGAATGGGCTCACTATCAATCGCTTCAGAGCTGATTGTGGATCATGTTC
CGAGGAAATCGTGGAGGAAATAGAAAAACACTGCAAGTCCTTCTATATCCGTGCTAACCGCTGCAGTTCGATCTACAATGACACCTTTGCTCTCAAAGGC
TGGAAAACTGAGGAAATCAATGGCATTGAGTTTGAATTGAACTCTATCCTTGTTGAGAAGTGGAAAGGTAAGGCATATCGACTTGTGATTCAAAGACAGA
AACGGATGGATGGTGTGCAGGATTTTTGGGAAGGAGAATACACATACCGTTGTATCCTGACTAACGACTATGATTCTTCCGTAAGAGAAATTGTCGAGTT
CTATAACCTTCGTGGAGGAAAGGAACGTATCTTCGATGATATGAACAATGGTTTCGGGTGGGACAGATTGCCCAAATCCTTCATGGCAGAGAACACAGTG
TTCCTTCTTCTTACAGCACTTATCCGTAACTTTTACAAGGCCATTATTCAAAGACTTGACGTAAAGAAGTTCGGGCTCAATGCAACAAGTCGCATAAAAG
CGTTTGTCTTCAGGTTTATCTCTGTACCAGCCAAGTGGATCAGGACATCAAGGCGGTATGTGCTGAACATCTATACCTGTAATAATGCTTACGCAGATGT
TTTCCAGACTGATTTTGGATAATGCCTACAACTTATGGGAATGATATTGTGTATTGCCTCAAGTCACATTGTGGGGTAAGGGGATATTGTAGGCAGAAGT
GGGTGCTTCAAGTTCAAATTATCTGCAAATTCAGTAATGAGAGGACGTGTAAACGCAATAAGGACGTTCAAGGGCTTAGTTGCGGATTTGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa761422+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSEFSLILVLQKKQENPTIDMAKIQIKSERLTPFGGLFSIMEQFDSTLSSVIDSTLGLRCRSFGYQYSEIIRSLMSIYFCSGSCIEDVTTHLMNHLSLHP
TLRTCSSDTILRAIKELTQENISYTSDMGKTYDFNTADTLNTLLLNCIFASGQLKEGEMYDVDFDHQFIETEKYDAKPTYKKFLGYRPGVAVIGDLIVGI
ENSDGNTNVRFHQKDTLKRFFARFEQNGLTINRFRADCGSCSEEIVEEIEKHCKSFYIRANRCSSIYNDTFALKGWKTEEINGIEFELNSILVEKWKGKA
YRLVIQRQKRMDGVQDFWEGEYTYRCILTNDYDSSVREIVEFYNLRGGKERIFDDMNNGFGWDRLPKSFMAENTVFLLLTALIRNFYKAIIQRLDVKKFG
LNATSRIKAFVFRFISVPAKWIRTSRRYVLNIYTCNNAYADVFQTDFG

 

Blast result :
Comments
This IS element was found in the imipenem-resistant Bacteroides fragilis 334984 strain originating from Denmark.
ISBf12 transposase is 96% aa similar to IS613.
References
1] Jozsef Soki (2011) Direct submission