ISUnCu16

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND uncultured bacterium
uncultured bacterium
DNA section
IS Length : 1532 bp

Ends


IR Length : 23/28

IRL : GTAACGGTTCACCCAGACCATGTTGACAGGTAAAAAATGAGACGATCGTC
IRR : GTAACCGTTCACCGGGAGGATGTTGACAACAACTCTTCCGGGAGCGGGTA

Insertion site


Left flankDirect repeatRight flankDR Length
GTAACGGTTCGAACGGTTAC0
GCCGAGGCGATCTTGGACCGACTGATCC8
TTCTGGCCCAGCGCTATCTGGGTCGCTA8
TTGACTGCCTGTTTAGAGGTTATCAGAA8
TATCGTACATGATTCCGAGACTATATTG8
GCCGTTGGCCGTTCATAGCAGCAAGCGG8

DNA sequence

GTAACGGTTCACCCAGACCATGTTGACAGGTAAAAAATGAGACGATCGTCCGGTGATCCACTATTGCCTCTTGCGTGATCCTGTCAGCTTGGCACCATCA
GGGGCATGAGCACATCCATGACCCCACCGGCCGCTTCGCCGCTGACCCTTGAGCAGGCTAATGAACTTATTCAGAAGCTGATGGCGCGCATCGCCGAGCT
AGAAGACCGACTCAACCAGCACAGCGGCAATTCCTCCAAGCCTCCTTCCAGTGATGGGCCAGGCTCACCACCACCTGCTCGGCCGCGCCTTGCCTCAGGT
AAAAAACGCGGCGCCCAACCGGGCCACAAAGGCGCTCGGCGTGAGCGTCATCCAGCGGATGAACGGCTGACGGTAATACCCCATTACCCTGCCAGACAGT
GCGCCTGCTGTGGGGGCAATGTGGTATTTCATGACAAACCCTACCGCGTCCATCAGGTCTTTGACCTGCCCGAGGTCAGCTACAGGGTGACCGAACATCA
GCTCTTTAGCGGCACCTGTTGTCATTGCATCGAGACCAGCCCGGCTCCGTTGCCCGAGACGGTGAGCAGCAGCCAGATGGGGACCAACCTGCTGAGCTAC
ATCGCCCTGCAAAGTGGTCTGTTTCACCAGAGCATTAGCCAGATACAACAACAGCTTAAACAGCACTTCGGCCTGAGCTTCAGTCGCGGCGCCATCAGCG
AGGCGCAAGGGCGAGTCAGTGCCATGTTGACCCCGACGCACCAGGCCATCAAACAACAAGTGCAATCAGCCTCCTGTATCCATGCCGATGAAACACGGCA
TCAGCGTGGTGGTGAGCGGCGCTGGATGTGGCTGGCACTGAGCAAGGTGGCCGTCTGTTTCATGACGGCGTTTGGCCGGGGTCAGGATGCGGCCAAACGG
CTGCTGGGCTCAGAATTGGATGGCGTGTTGGTGACAGACCAGTACGCAGGATACCGTTTCATCGACAGCAGCCAGCGTCAGCTGTGCTGGGCCCATGTAC
TGCGCAATGTGGCAGCGATTGCCGACAGCGGCGAAAAGGTCAATCAGCCCATTGGGGCCCGACTGGTGCTTCTCGCAAATAGCGTATTCAGGGTTCGACA
TGGCTATGAACAAGGCGTGTTGAGCCAGAAACAATATCAGCGAAGGCTTGAGCGATGTCGGCAAAGCTGGCGAAAAGAGCTGGGGCGAGGCAGTTTGCTG
TGCAGCAAGCGCTACCGAGGTCGCTGTCGGCTACTGCTCAAGGATGATGAAATGCTGTGGCGTTTTCTGGAAAACGACGAGATAGCCTTGACCAATAATG
AGGCGGAACGGGCGCTACGCGGGTATGTGCTGTGGCGCAAGGGGAGCTATGGCGTTTGGTCACATCGGGGAGAGCTGTTTCGGCAGCGCATCTTGTCTTT
GATAGAGACAGCCAAGCGGTTAGGTCGCTGTCCGCAGGAATGGCTGAGGGCCGTGGTCAGTGCCTGCATAGAGAAAACAGACTACCCGCTCCCGGAAGAG
TTGTTGTCAACATCCTCCCGGTGAACGGTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1419 bp472 aa1061524+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTSMTPPAASPLTLEQANELIQKLMARIAELEDRLNQHSGNSSKPPSSDGPGSPPPARPRLASGKKRGAQPGHKGARRERHPADERLTVIPHYPARQCA
CCGGNVVFHDKPYRVHQVFDLPEVSYRVTEHQLFSGTCCHCIETSPAPLPETVSSSQMGTNLLSYIALQSGLFHQSISQIQQQLKQHFGLSFSRGAISEA
QGRVSAMLTPTHQAIKQQVQSASCIHADETRHQRGGERRWMWLALSKVAVCFMTAFGRGQDAAKRLLGSELDGVLVTDQYAGYRFIDSSQRQLCWAHVLR
NVAAIADSGEKVNQPIGARLVLLANSVFRVRHGYEQGVLSQKQYQRRLERCRQSWRKELGRGSLLCSKRYRGRCRLLLKDDEMLWRFLENDEIALTNNEA
ERALRGYVLWRKGSYGVWSHRGELFRQRILSLIETAKRLGRCPQEWLRAVVSACIEKTDYPLPEELLSTSSR

 

Blast result :
Comments
ISUnCu16 is 71% aa similar to ISAma4.
References
1] GIRLICH D. (2011) Direct submission