ISRso21

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Ralstonia solanacearum
Ralstonia solanacearum
DNA section
IS Length : 2032 bp

Ends


IR Length : 20/25

IRL : GGCTCTACGGAATATCGTGTGTAAATGTGCATATTCGTCTACAATCACAA
IRR : GGCTCAACGGATTACTGTGTGGAAAGTGAATCATGCTGACTAGCACTGTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGCTCTACGGAATATCGTGTGTAAATGTGCATATTCGTCTACAATCACAAAACGGAATAACGTGTGGAAAGGCGATTGCGCATGGCTACTGAAGAACAAC
TGATGCTTGACCTTACGATTGGTGGGCGCCGAGTCCTTGACCCTTGCTGTGGCAGCAGGATGTTCTGGTTCGACAGGCAGAATCCGGACGTGGTGTATGG
CGATAAACGGTCAGAGAGCCATGTGCTATGCGACGGTCGAACACTGCGAATCGAGCCTGACATGCTGCTGGACTTCACCGATATGCCATTCGACGATGGC
AGCTTCAAACTGGTGGTTTTTGACCCGCCGCATTTGCACACTGCCGGTCCGAGAAGTTGGATGACGAAGAAGTACGGCAAGCTGTCGGAAACTTGGCAGG
AAGACATCCGCAAGGGGTTCAGCGAATGCTTCCGGGTGCTGGCCAGCGATGGTGTCTTGGTCTTCAAGTGGAATGAAACCCAGGTGAAGATTCGGGAAGT
TCTCGCTCTTACCGACGTGCAGCCTCTGTTCGGCCATCCGACTGGACGTAAAGGGCTGACGCATTGGTACGTTTTCATGAAGCCGTCCGAGGTAGTTTGA
TGACCGACATCCTTGACCTGGATGGCTGGACCGTCATCAACAAGCGCCTTGACGGCGACGAATACGAGATTGAGGCCGAGTACACCATCAGCCCCGACTT
TTGCCAGAAGTGTGGCGTCGTTGGCGGCCTGTACCGCCATGGCCCGAAGCCCATAACCATCCGCGACAGCCCTATCCGAGGCCGGCACGTGCGCATCCTG
GCCAGGGCAAAACGGTTCAAGTGCCGGGAATGCGGGGGCACGTTCATCCAGCCGCTGGGCGGCATCCACGGCGCCATGCGGATGACAGAGCGGTGCGTCG
AGTACATCCAGTCTCAATGCCTGCGCGACACCTTCGTGCGCGTGGCTGAGCATATTGGCTGCGATGACAAGACCGTCCGCACCTTGGCGGGCGACTACAT
CGAGCAGCTCAACGCCGAATACAAGCCTTGGCTGCCAGAGTGGCTGGGCATTGATGAGACGCAGATTGACGGGAAGCTCAGGTGCATCGTCACTGATGTC
GCCAACCGGGTCCCGATTGACATGCTGCCCGACCGCGACAAGCCGCTGGTCACGGCCTGGCTGCATCGATTCAAGGACCGAAGCGTCGTCAAGGGCTTGG
CCATCGACATGTGGAGGCCATACAAGGATGCCGCCCAGTCTGTCTTCCCTGGGCTGCCCGTGGTTATCGACAGGTTCCACCTGGTCAGGATGGCGAATCA
AGCCATGGATGCCGTCCGAATTTCGCTTGCCAAGGACCAGGAAAAGGCTGTTGGCAGAGACTGGATGCGGCGCAAATCCTTGCTCCGGATGCGTTACAAG
AACCTGGACGAGAAGGGGCGTTTCAACCTCCAGATGTGGCTGGACAACGAGCCGCACGTGGCAACCGCCTACCGCCTCAAGGAGTCGTTCTACGACATAT
ACGATGCTCCGACCAGGGCGGAAGCTGCCGGCCGGCTTGATGCCTGGCGCAAGTCCGTCCCAGCGGACATGAAGAAGGGAAAGAAGAGCTTCCAGCCGCT
GCTGACGGCCACCAGGAACTGGCGTGAGGAGATGCTGGCCTACTTCGACCACCCGATTTCGAATGGTTATACGGAAGCCCTCAACGGGGTCGCCAAGGTC
ATCAATCGAGCTGGACGGGGCTACAGCTTTGATGTCCTGCGCGCCCGCCTTCTGTTCAAGAACCGGGAGAGAGCCCAGCCGCCGGCGGTCGTTGAGCAGT
TGATGAGCCGCTCCACGCCGGCCCATGAGACGCTGATGGAAGCGCTCGGGAACCGGTGCGAATCGTGCCAGGGTGTGTTCGAAAGCTGGATGCTGGAGTC
CCACCACGTTCGCCCAGTCGTTCCTGGCGAGCACACAAGAAGGCTGTATCTCTGCCCGACCTGCCATAGGCGTTTCCACACGGACAGTGCTAGTCAGCAT
GATTCACTTTCCACACAGTAATCCGTTGAGCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
519 bp172 aa82600+No
ORF function : Passenger Gene
Annotation : Putative methyltransferaseDescription :

ORF sequence :

MATEEQLMLDLTIGGRRVLDPCCGSRMFWFDRQNPDVVYGDKRSESHVLCDGRTLRIEPDMLLDFTDMPFDDGSFKLVVFDPPHLHTAGPRSWMTKKYGK
LSETWQEDIRKGFSECFRVLASDGVLVFKWNETQVKIREVLALTDVQPLFGHPTGRKGLTHWYVFMKPSEVV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1422 bp473 aa6002021+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTDILDLDGWTVINKRLDGDEYEIEAEYTISPDFCQKCGVVGGLYRHGPKPITIRDSPIRGRHVRILARAKRFKCRECGGTFIQPLGGIHGAMRMTERCV
EYIQSQCLRDTFVRVAEHIGCDDKTVRTLAGDYIEQLNAEYKPWLPEWLGIDETQIDGKLRCIVTDVANRVPIDMLPDRDKPLVTAWLHRFKDRSVVKGL
AIDMWRPYKDAAQSVFPGLPVVIDRFHLVRMANQAMDAVRISLAKDQEKAVGRDWMRRKSLLRMRYKNLDEKGRFNLQMWLDNEPHVATAYRLKESFYDI
YDAPTRAEAAGRLDAWRKSVPADMKKGKKSFQPLLTATRNWREEMLAYFDHPISNGYTEALNGVAKVINRAGRGYSFDVLRARLLFKNRERAQPPAVVEQ
LMSRSTPAHETLMEALGNRCESCQGVFESWMLESHHVRPVVPGEHTRRLYLCPTCHRRFHTDSASQHDSLSTQ

 

Blast result :
Comments
ISRso21 ORF1 is a putative methyltransferase, and ISRso21 ORF2 a transposase.
The ISRso21 transposase is 57% aa similar to ISPpu12 transposase.
References
1] JianMei CHE (2011) Direct submission