ISDha15
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Desulfitobacterium dichloroeliminans | Desulfitobacterium hafniense TCE1 Desulfitobacterium dichloroeliminans DCA1 |
DNA section
IS Length : 1860 bp
Ends
IR Length : 13
IRL : CTCGAGTTTGACAGCAACAACGAAAATTTTGTTGCTGTTAATTTTTAATT
IRR : CTCGAGTTTGACACCTCGAAAGCTGTAACTATTGAATTTCAAGGGCTTCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTAAGATTAG | TAATA | TGATAGGAAG | 5 |
DNA sequence
CTCGAGTTTGACAGCAACAACGAAAATTTTGTTGCTGTTAATTTTTAATTATGGCTTTTCATGCGGATTCAAAGCTAAAAATCCTTCCAAAAAACCGCTG
AAACTTTAGATTGTAGTGCCGCACGTTGGCAAATAATTACTGTTATCACCTCGATTTAAGTGGTATAATGGTGTTGCTATGTTTGCACGTATTAAAACAG
CCTACAATCGGGACGGCTCGGAACGCCGTTACCTTCAAATCTGTGAGAGCCGTCGTGAAGAGGGTAAGGTTCGTCAAAAAGTCCTTTGTAACTTGGGGAG
AGTGGAGGATCTCCAAAATGGGAAACTTGACGACCTGATTCGCTCTCTTGCGAAGTTCTCCGATAAACTTGCTGTGGTGGATGCCGCTGAAGATCTCTTT
GCAGACTGGAGTAAAGAGTATGGACCCTCTTTGGTCTTTCGTCGACTCTGGGAAAACCTTGGACTTCATGAAATACTGGCTCAACTCTTTTGCGAGAGAG
AATTAAGTGTGGATGTACAAGAAGCCATCTTCTGTATGGTTTTAAATCGCTTAACGGAGCCCACCAGTAAACTGGGAGTCAGCGATTGGAAAGATTCCGT
CCATCGCCCAGAGTTAGAGAGTTTGAAGCTTCATCATTTCTATCGAGCGATCGACTTCTTGGATGAAAACAAGGAAATGATTGAAGAGAAACTTTTCTAC
CATCATACCGACCTATTTACCCGTCAACTGGATCTCGTTTTCTTTGACACGACCTCCACGTATGTGGAAGGAGACGCAGGGGCTTTCGACCTTCTCGAAT
ATGGCCATTCCAAGGACCATCGGCCGGATCGTCTCCAAGTTATGATTGGAATGCTGATGTCGAGGGATGGAATTCCCATTGCTCATCATGTCTTCCCTGG
GAATACCCCGGATACAGATGCATTTATTGAAGCGGTCAGTGATTTGAAAAAACGATTTAATATCCAACGTGTTATTGTTGTTGGGGATCGGGGCATGATG
GGCAAGCGGACCTTAGAGCTTCTCGAGAAATTGAACCTTCAATACATCCTGGGAGTTCGGATGCGAAATGTTAAAGTTGGCCCTGAAATCGTAGCTTCCC
CTGAACCGTATACTCTTGTTAAGGATAACCTCAAGGTAAAAGAAGTTACCCTCGGAGGAGATCGATATATTGTTTGTTTAAACGAAGAAGAGGCTAAACG
AGATCAAGCCGTTCGAGAAAAGATTGAGATTAAACTTCGTAGCAAGCTTGAACACGGGAATATTAAGGATTTAATCGGGAACAGCGAATACAAAAAGTAC
ATCAACGTCACACAGGATGCGGCAACGATTAATAAGGAAAAACTAAAACAAGCAGCTCTTTTTGATGGTCTATACATATTGCAAACGAATACTCAGCTTC
CTACAGAGGAAGTCGCGACCGCTTATCGAGACTTATGGCAAATTGAACGTGCGTTTCGAAATCTCAAGAGTACGCTCGATTTACGTCCGGTCTACCACTG
GACGGAACGGCGGATCTGCGGACACATTATGCTTTGCTTTCTCGCACTCGTAATGCAGATCAAGTTTCAAAAGCTTCTTATGAATTGCGAAAGTGAATAC
GGCTATACCGAAGTAATTCGTGCGCTAAGGAAAGTCCATGCCGTTAAAATTAAAGTTAAAGATCAGGAACACTTAGTACGAACCGAGGTTCATGGCGCTG
CAGCGATCGCATTTAAAGCAGTCGGGGCAAGGATTCCAGAAAGAGTTCAAAAGGTATAGATGAATTCCCACAAACAGGGAATTGTAGTGGTATGCGCAAA
TCTAAAGTTTGGAAGCCCTTGAAATTCAATAGTTACAGCTTTCGAGGTGTCAAACTCGAG
AAACTTTAGATTGTAGTGCCGCACGTTGGCAAATAATTACTGTTATCACCTCGATTTAAGTGGTATAATGGTGTTGCTATGTTTGCACGTATTAAAACAG
CCTACAATCGGGACGGCTCGGAACGCCGTTACCTTCAAATCTGTGAGAGCCGTCGTGAAGAGGGTAAGGTTCGTCAAAAAGTCCTTTGTAACTTGGGGAG
AGTGGAGGATCTCCAAAATGGGAAACTTGACGACCTGATTCGCTCTCTTGCGAAGTTCTCCGATAAACTTGCTGTGGTGGATGCCGCTGAAGATCTCTTT
GCAGACTGGAGTAAAGAGTATGGACCCTCTTTGGTCTTTCGTCGACTCTGGGAAAACCTTGGACTTCATGAAATACTGGCTCAACTCTTTTGCGAGAGAG
AATTAAGTGTGGATGTACAAGAAGCCATCTTCTGTATGGTTTTAAATCGCTTAACGGAGCCCACCAGTAAACTGGGAGTCAGCGATTGGAAAGATTCCGT
CCATCGCCCAGAGTTAGAGAGTTTGAAGCTTCATCATTTCTATCGAGCGATCGACTTCTTGGATGAAAACAAGGAAATGATTGAAGAGAAACTTTTCTAC
CATCATACCGACCTATTTACCCGTCAACTGGATCTCGTTTTCTTTGACACGACCTCCACGTATGTGGAAGGAGACGCAGGGGCTTTCGACCTTCTCGAAT
ATGGCCATTCCAAGGACCATCGGCCGGATCGTCTCCAAGTTATGATTGGAATGCTGATGTCGAGGGATGGAATTCCCATTGCTCATCATGTCTTCCCTGG
GAATACCCCGGATACAGATGCATTTATTGAAGCGGTCAGTGATTTGAAAAAACGATTTAATATCCAACGTGTTATTGTTGTTGGGGATCGGGGCATGATG
GGCAAGCGGACCTTAGAGCTTCTCGAGAAATTGAACCTTCAATACATCCTGGGAGTTCGGATGCGAAATGTTAAAGTTGGCCCTGAAATCGTAGCTTCCC
CTGAACCGTATACTCTTGTTAAGGATAACCTCAAGGTAAAAGAAGTTACCCTCGGAGGAGATCGATATATTGTTTGTTTAAACGAAGAAGAGGCTAAACG
AGATCAAGCCGTTCGAGAAAAGATTGAGATTAAACTTCGTAGCAAGCTTGAACACGGGAATATTAAGGATTTAATCGGGAACAGCGAATACAAAAAGTAC
ATCAACGTCACACAGGATGCGGCAACGATTAATAAGGAAAAACTAAAACAAGCAGCTCTTTTTGATGGTCTATACATATTGCAAACGAATACTCAGCTTC
CTACAGAGGAAGTCGCGACCGCTTATCGAGACTTATGGCAAATTGAACGTGCGTTTCGAAATCTCAAGAGTACGCTCGATTTACGTCCGGTCTACCACTG
GACGGAACGGCGGATCTGCGGACACATTATGCTTTGCTTTCTCGCACTCGTAATGCAGATCAAGTTTCAAAAGCTTCTTATGAATTGCGAAAGTGAATAC
GGCTATACCGAAGTAATTCGTGCGCTAAGGAAAGTCCATGCCGTTAAAATTAAAGTTAAAGATCAGGAACACTTAGTACGAACCGAGGTTCATGGCGCTG
CAGCGATCGCATTTAAAGCAGTCGGGGCAAGGATTCCAGAAAGAGTTCAAAAGGTATAGATGAATTCCCACAAACAGGGAATTGTAGTGGTATGCGCAAA
TCTAAAGTTTGGAAGCCCTTGAAATTCAATAGTTACAGCTTTCGAGGTGTCAAACTCGAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1581 bp | 526 aa | 179 | 1759 | + | No |
Chemistry : DDE
ORF sequence :
MFARIKTAYNRDGSERRYLQICESRREEGKVRQKVLCNLGRVEDLQNGKLDDLIRSLAKFSDKLAVVDAAEDLFADWSKEYGPSLVFRRLWENLGLHEIL
AQLFCERELSVDVQEAIFCMVLNRLTEPTSKLGVSDWKDSVHRPELESLKLHHFYRAIDFLDENKEMIEEKLFYHHTDLFTRQLDLVFFDTTSTYVEGDA
GAFDLLEYGHSKDHRPDRLQVMIGMLMSRDGIPIAHHVFPGNTPDTDAFIEAVSDLKKRFNIQRVIVVGDRGMMGKRTLELLEKLNLQYILGVRMRNVKV
GPEIVASPEPYTLVKDNLKVKEVTLGGDRYIVCLNEEEAKRDQAVREKIEIKLRSKLEHGNIKDLIGNSEYKKYINVTQDAATINKEKLKQAALFDGLYI
LQTNTQLPTEEVATAYRDLWQIERAFRNLKSTLDLRPVYHWTERRICGHIMLCFLALVMQIKFQKLLMNCESEYGYTEVIRALRKVHAVKIKVKDQEHLV
RTEVHGAAAIAFKAVGARIPERVQKV
AQLFCERELSVDVQEAIFCMVLNRLTEPTSKLGVSDWKDSVHRPELESLKLHHFYRAIDFLDENKEMIEEKLFYHHTDLFTRQLDLVFFDTTSTYVEGDA
GAFDLLEYGHSKDHRPDRLQVMIGMLMSRDGIPIAHHVFPGNTPDTDAFIEAVSDLKKRFNIQRVIVVGDRGMMGKRTLELLEKLNLQYILGVRMRNVKV
GPEIVASPEPYTLVKDNLKVKEVTLGGDRYIVCLNEEEAKRDQAVREKIEIKLRSKLEHGNIKDLIGNSEYKKYINVTQDAATINKEKLKQAALFDGLYI
LQTNTQLPTEEVATAYRDLWQIERAFRNLKSTLDLRPVYHWTERRICGHIMLCFLALVMQIKFQKLLMNCESEYGYTEVIRALRKVHAVKIKVKDQEHLV
RTEVHGAAAIAFKAVGARIPERVQKV
Blast result :
Comments
A partial ISDha15 sequence was originally found in Desulfitobacterium hafniense strain TCE1 (Maillard et al., 2005). The draft genome of Desulfitobacterium dichloroeliminans strain DCA1 allowed the identification of the complete ISDha15 sequence, and of its features.
ISDha15 is 92% aa similar to ISDha9.
ISDha15 is 92% aa similar to ISDha9.
References
1] Maillard, J., Regeard, C., and Holliger C. (2005) Environ. Microbiol. 71, 107-117