ISPve1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HQ384165 | Y | Paracoccus versutus | Paracoccus bengalensis DSM 17099 Paracoccus versutus UW1 |
DNA section
IS Length : 2503 bp
Ends
IR Length : 17/28
IRL : TGAGAATGGCGGTGCGAAATTAGTCCACGTTAGCGGCGGCATGGTGCTGC
IRR : TGTCAACGGCGGCGTAAAAACCTGCCACTGGGCGGCGCAAAAGTCGGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTGTTGACT | ATTTTACC | TCTGGCGGTG | 8 |
DNA sequence
TGAGAATGGCGGTGCGAAATTAGTCCACGTTAGCGGCGGCATGGTGCTGCTGCGGGCGGCGTAAAAGTCGTCCACCTTTTCCCTTTCTGCGGCTGCAGGG
AGGATGGGAGGATCTACAGCGTGGAACTCTATCTCAAGGTTCGTCAGGCCTGTGCTGCTGGTATGAGCCAGCGTCAGGCGGCGACGACATTCAACATATC
GCGCGACACGGTCGCAAAGATGATGACGTTCTCGGTTCCTCCGGGCTACCGGCGGACGGCCGAGGTCAGGCGCCCGAAGCTCGATCCGTTCATCCCGATC
ATCGAGGGTTGGCTGGAGGCGGACCGGACCATGCCGCGCAAGCAGCGGCATACGGCGAAGCGTGTGTTTGACCGTCTGCGCGAAGAATGCGGTTTCACCG
GCGGCTACACGATCATCAAGGATTATATCCGGGAACGTGAGCGGCGGGGCCAGGAGGTGTTCGTGCCGCTGGCGCATCCCCCAGGACACGCGCAGGCCGA
CTTCGGCGAGGCAATGGTTCGGATCGGAGGTGTCGAACAGAAGGCGCATTTCTTCGTGCTGGACTTGCCGCATAGCGACGCCTGCTACGTCCGTGCCTAT
CCGGCGGCGGTTGCCGAGGCCTGGGTGGACGGTCATGTCCATGCCTTTGCCTTTTTGGGGGCGGTTCCGCAGTCGATCGTCTACGACAATGACCGCTGCC
TGGTGGCGAAGATCCTGCCGGATGGCACCCGCAAGCGAGCCGCCCTGTTCAGCGGGTTTCTGTCGCATTACCTGATCCGGGATCGCTATGGCCGCCCTGG
CAAGGGGAACGACAAAGGCAATGTCGAAGGCCTGGTGGGCTATTGCCGCCGCAACTTCATGGTGCCGATGCCTGAGTTCGCCAGTTGGGAAGAATTCAAC
CTCTGGCTGGAGGAGCGCTGCAAGCGGCGTCAGCACGATGTCCTTCGCGGCGAGAGCGAAACGATCGGCGAGCGACTGCAGCGCGATCTCGCCGCGATGC
GCCCGCTCCCGGCGGCGCCCTTTGATGCCTGCGATCAGGCGACCGGCCGCGTGTCGTCGCAATCGCTGGTGCGCTACAAGACCAACGATTACTCGGTGCC
CGTCGCCTACGGCCATCAGGATGTCTGGATCCGGGGCTATATCCATGAGGTGGTGATCGGCTGCCGGGGCGAAGTGATCGCCCGCCATCCCCGGTGCTGG
GATCGCGACGAGATCGTCTTCGACCCGCTCCATTACCTTCCGCTGATCGAGCAGAAGATCAATGCGTTGGATCAGGCGGCACCATTGCAGGACTGGGACC
TGCCAGAGGAGTTCGCCACCCTGCGCCGGCTGATGGAGGCACGGATGAACCGGCACGGCCGACGCGAATATGTCCAGGTCCTGCGGCTTCTGGAAACCTT
CGATCTGGCCGATCTGCATGCGGCCGTGAGGCAGGCGCTGCAGATGGGGGCGATCGGCTTCGATGCGGTGAAGCATCTCTTGTTGTGCCGGGTGGAGCGC
CGGCCACCCCGGCTGGATCTGGACTGCTATCCCTACCTGCCCAGGGCAACGGTCGAGAAGACCGAGGCCCGCTCCTACATGCGGCTGCTGTCTGTCAATG
CGGAGGGCGTGGCATGAGCGACGCCCCGGAAATCCTGCTTGCCCATCACCTCAAGGCGCTGAAACTGCCGACCTTCCTGCGAGAACACCAGAAACTGGCC
CGGCAATGTGCGGCGGAAGGCGTGGACCATGTCCGATATCTCGCCCGGCTCGTCGAACTGGAACTGATCGACCGGGAACGGCGGATGGTCGAGCGGCGCA
TCAAGGCCGCCAGGTTCCCGGCCGTCAAAAGCCTGGACAGCTTCGACTTCACGGTCATCCCGAAGCTCAACAAGATGCAGGTGCTGGAACTGGCCCGGTG
CGAATGGATCGAGCGGCGCGAGAACATTATTGCTCTCGGCCCCAGTGGCACGGGCAAGACGCACATCTCGCTCGGCCTTGGTCTGGCCGCCTGCCAGAAG
GGCCTGTCCGTCGGCTTCACCACCGCCGCGGCCCTGGTCAGCGAGATGATGGAGGCCCGCGACGAGCGCCGCCTGCTGCGCTTCCAGAAGCAGATGGCAG
GATACAAGCTGCTCATCATCGATGAACTCGGCTTCGTGCCGCTGTCGAAGACCGGCGCCGAGCTGCTGTTCGAACTGATCTCGCAACGCTACGAGCGCGG
ATCGATCCTGATCACCAGCAATCTGCCTTTCGACGAATGGACCGAAACTTTCGGCTCCGAACGCCTCACCGGCGCGCTTCTCGACCGGCTGACCCACCAC
GTCAACATCCTCGAGATGAATGGCGAAAGCTACCGCCTCGCCAACAGTCGCGCCAGAAAGGCCGGCTGATCCCCCCTCCTCGAAAACCGCAACGCGCGGC
TGAGACCCCCGCTCGGGCTACGCCCTCGCAGCGGTCTCAGCCGCGCACAACGGTGGCCGACTTTTGCGCCGCCCAGTGGCAGGTTTTTACGCCGCCGTTG
ACA
AGGATGGGAGGATCTACAGCGTGGAACTCTATCTCAAGGTTCGTCAGGCCTGTGCTGCTGGTATGAGCCAGCGTCAGGCGGCGACGACATTCAACATATC
GCGCGACACGGTCGCAAAGATGATGACGTTCTCGGTTCCTCCGGGCTACCGGCGGACGGCCGAGGTCAGGCGCCCGAAGCTCGATCCGTTCATCCCGATC
ATCGAGGGTTGGCTGGAGGCGGACCGGACCATGCCGCGCAAGCAGCGGCATACGGCGAAGCGTGTGTTTGACCGTCTGCGCGAAGAATGCGGTTTCACCG
GCGGCTACACGATCATCAAGGATTATATCCGGGAACGTGAGCGGCGGGGCCAGGAGGTGTTCGTGCCGCTGGCGCATCCCCCAGGACACGCGCAGGCCGA
CTTCGGCGAGGCAATGGTTCGGATCGGAGGTGTCGAACAGAAGGCGCATTTCTTCGTGCTGGACTTGCCGCATAGCGACGCCTGCTACGTCCGTGCCTAT
CCGGCGGCGGTTGCCGAGGCCTGGGTGGACGGTCATGTCCATGCCTTTGCCTTTTTGGGGGCGGTTCCGCAGTCGATCGTCTACGACAATGACCGCTGCC
TGGTGGCGAAGATCCTGCCGGATGGCACCCGCAAGCGAGCCGCCCTGTTCAGCGGGTTTCTGTCGCATTACCTGATCCGGGATCGCTATGGCCGCCCTGG
CAAGGGGAACGACAAAGGCAATGTCGAAGGCCTGGTGGGCTATTGCCGCCGCAACTTCATGGTGCCGATGCCTGAGTTCGCCAGTTGGGAAGAATTCAAC
CTCTGGCTGGAGGAGCGCTGCAAGCGGCGTCAGCACGATGTCCTTCGCGGCGAGAGCGAAACGATCGGCGAGCGACTGCAGCGCGATCTCGCCGCGATGC
GCCCGCTCCCGGCGGCGCCCTTTGATGCCTGCGATCAGGCGACCGGCCGCGTGTCGTCGCAATCGCTGGTGCGCTACAAGACCAACGATTACTCGGTGCC
CGTCGCCTACGGCCATCAGGATGTCTGGATCCGGGGCTATATCCATGAGGTGGTGATCGGCTGCCGGGGCGAAGTGATCGCCCGCCATCCCCGGTGCTGG
GATCGCGACGAGATCGTCTTCGACCCGCTCCATTACCTTCCGCTGATCGAGCAGAAGATCAATGCGTTGGATCAGGCGGCACCATTGCAGGACTGGGACC
TGCCAGAGGAGTTCGCCACCCTGCGCCGGCTGATGGAGGCACGGATGAACCGGCACGGCCGACGCGAATATGTCCAGGTCCTGCGGCTTCTGGAAACCTT
CGATCTGGCCGATCTGCATGCGGCCGTGAGGCAGGCGCTGCAGATGGGGGCGATCGGCTTCGATGCGGTGAAGCATCTCTTGTTGTGCCGGGTGGAGCGC
CGGCCACCCCGGCTGGATCTGGACTGCTATCCCTACCTGCCCAGGGCAACGGTCGAGAAGACCGAGGCCCGCTCCTACATGCGGCTGCTGTCTGTCAATG
CGGAGGGCGTGGCATGAGCGACGCCCCGGAAATCCTGCTTGCCCATCACCTCAAGGCGCTGAAACTGCCGACCTTCCTGCGAGAACACCAGAAACTGGCC
CGGCAATGTGCGGCGGAAGGCGTGGACCATGTCCGATATCTCGCCCGGCTCGTCGAACTGGAACTGATCGACCGGGAACGGCGGATGGTCGAGCGGCGCA
TCAAGGCCGCCAGGTTCCCGGCCGTCAAAAGCCTGGACAGCTTCGACTTCACGGTCATCCCGAAGCTCAACAAGATGCAGGTGCTGGAACTGGCCCGGTG
CGAATGGATCGAGCGGCGCGAGAACATTATTGCTCTCGGCCCCAGTGGCACGGGCAAGACGCACATCTCGCTCGGCCTTGGTCTGGCCGCCTGCCAGAAG
GGCCTGTCCGTCGGCTTCACCACCGCCGCGGCCCTGGTCAGCGAGATGATGGAGGCCCGCGACGAGCGCCGCCTGCTGCGCTTCCAGAAGCAGATGGCAG
GATACAAGCTGCTCATCATCGATGAACTCGGCTTCGTGCCGCTGTCGAAGACCGGCGCCGAGCTGCTGTTCGAACTGATCTCGCAACGCTACGAGCGCGG
ATCGATCCTGATCACCAGCAATCTGCCTTTCGACGAATGGACCGAAACTTTCGGCTCCGAACGCCTCACCGGCGCGCTTCTCGACCGGCTGACCCACCAC
GTCAACATCCTCGAGATGAATGGCGAAAGCTACCGCCTCGCCAACAGTCGCGCCAGAAAGGCCGGCTGATCCCCCCTCCTCGAAAACCGCAACGCGCGGC
TGAGACCCCCGCTCGGGCTACGCCCTCGCAGCGGTCTCAGCCGCGCACAACGGTGGCCGACTTTTGCGCCGCCCAGTGGCAGGTTTTTACGCCGCCGTTG
ACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1455 bp | 484 aa | 163 | 1617 | + | No |
Chemistry : DDE
ORF sequence :
MSQRQAATTFNISRDTVAKMMTFSVPPGYRRTAEVRRPKLDPFIPIIEGWLEADRTMPRKQRHTAKRVFDRLREECGFTGGYTIIKDYIRERERRGQEVF
VPLAHPPGHAQADFGEAMVRIGGVEQKAHFFVLDLPHSDACYVRAYPAAVAEAWVDGHVHAFAFLGAVPQSIVYDNDRCLVAKILPDGTRKRAALFSGFL
SHYLIRDRYGRPGKGNDKGNVEGLVGYCRRNFMVPMPEFASWEEFNLWLEERCKRRQHDVLRGESETIGERLQRDLAAMRPLPAAPFDACDQATGRVSSQ
SLVRYKTNDYSVPVAYGHQDVWIRGYIHEVVIGCRGEVIARHPRCWDRDEIVFDPLHYLPLIEQKINALDQAAPLQDWDLPEEFATLRRLMEARMNRHGR
REYVQVLRLLETFDLADLHAAVRQALQMGAIGFDAVKHLLLCRVERRPPRLDLDCYPYLPRATVEKTEARSYMRLLSVNAEGVA
VPLAHPPGHAQADFGEAMVRIGGVEQKAHFFVLDLPHSDACYVRAYPAAVAEAWVDGHVHAFAFLGAVPQSIVYDNDRCLVAKILPDGTRKRAALFSGFL
SHYLIRDRYGRPGKGNDKGNVEGLVGYCRRNFMVPMPEFASWEEFNLWLEERCKRRQHDVLRGESETIGERLQRDLAAMRPLPAAPFDACDQATGRVSSQ
SLVRYKTNDYSVPVAYGHQDVWIRGYIHEVVIGCRGEVIARHPRCWDRDEIVFDPLHYLPLIEQKINALDQAAPLQDWDLPEEFATLRRLMEARMNRHGR
REYVQVLRLLETFDLADLHAAVRQALQMGAIGFDAVKHLLLCRVERRPPRLDLDCYPYLPRATVEKTEARSYMRLLSVNAEGVA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
756 bp | 251 aa | 1614 | 2369 | + | No |
AG : IS21 helper
ORF sequence :
MSDAPEILLAHHLKALKLPTFLREHQKLARQCAAEGVDHVRYLARLVELELIDRERRMVERRIKAARFPAVKSLDSFDFTVIPKLNKMQVLELARCEWIE
RRENIIALGPSGTGKTHISLGLGLAACQKGLSVGFTTAAALVSEMMEARDERRLLRFQKQMAGYKLLIIDELGFVPLSKTGAELLFELISQRYERGSILI
TSNLPFDEWTETFGSERLTGALLDRLTHHVNILEMNGESYRLANSRARKAG
RRENIIALGPSGTGKTHISLGLGLAACQKGLSVGFTTAAALVSEMMEARDERRLLRFQKQMAGYKLLIIDELGFVPLSKTGAELLFELISQRYERGSILI
TSNLPFDEWTETFGSERLTGALLDRLTHHVNILEMNGESYRLANSRARKAG
Blast result :
Comments
ISPve1 has been identified by its transposition into entrapment vector pMMB2.
ISPve1 is 89% (ORFA : the transposase) and 97% (ORFB : the helper of transposition) aa similar to ISSsp5.
ISPve1 is 89% (ORFA : the transposase) and 97% (ORFB : the helper of transposition) aa similar to ISSsp5.
References
1] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277