ISCps8

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003910 ND Colwellia psychrerythraea
Colwellia psychrerythraea 34H
DNA section
IS Length : 1563 bp

Ends


IR Length : 13

IRL : agacacaATGACTCCCCACGAGGTGCTAGCCTCTGAACGTGGGTTAGTTT
IRR : ----ggtATGACTCCCCACGTCAAGTTAAATACACTGATCCTTGCTCATT

Insertion site


Left flankDirect repeatRight flankDR Length
ATGTAAACATAACGCCGCAG0

DNA sequence

AGACACAATGACTCCCCACGAGGTGCTAGCCTCTGAACGTGGGTTAGTTTTACAAACCAGAGCCATAATATATGTGTCAACAATATAAAGCAGAGGCTAG
CATGATAAAACATAACATACTTTTCATTGGCTTAGATACCCACAAAACATTTACTGAAGTTGCCTACATTGAAGGCCAACGTGGCGCTAAATCAATTCAC
TTAGGTAAAATCCTCAGTAATAAAGCCGCATTTAAAAAGCTCGCTCGACAGTTACAATCAAAATACCCCGACGCTACGCTTCATTTTGTTTACGAAGCAG
GCCCTTGCGGCTATTGGATTTACCGTTTACTGACCAGCCTTCATCATTGCTGTTATGTTATTGCCCCTTCTCTTATTCCAAAAAAAACAGGAGAGCGTAT
TAAAACCGATAAACGTGATGCGCTCAAACTCGCTAAATTACTTAAATCAGAAGATCTAACTACTATCTATGTGCCTGAGCCAGAAGATGAAGCCGTGCGA
GATTTATCCCGCTCGCGTGAGACGGGCATGAAAGATTTGAAAGATGCTAAATACCAACTTAAAGCCTTATTGCTGCGTAACAACATTAACAGCAAAGTGA
AAGATAACTGGTCATTACAACATTTACGTTGGCTTGCTGAATTAGTATTACCTCATCCTTGTCAGCAAATTGTTTTACAAGAAGCCGTTTCAACTATCAC
CGAACGATTAAAGCGTCTAAAAAGGCTTGATAATGAATTAACCCATCAAGTAAAAAGTTGGCGATATTATCCTGTAGTCAAAGCGATACAAGCTATGCGT
GGTGTGAGGTTACTCGTGGCAACAGGTGTTATCGCAGAGCTGGGTGATTTATCACGATTCGATCATCCCAGAAAACTAATGAGTTACCTTGGTCTTGTGC
CAAGTGAACATTCAAGTGGCGGTAAACGCCGACTAGGTGCTATTACCAAATGTGGTAACAGCCGTGCAAGACGACTACTGGTCGAAGGTGCACACTCGTA
TAAACACAACGCCAATATTTCAAAAGAAATGCAACTAAGGCAAGAAGGATTAAGCAAAGAGATCATCGATATGGCATGGCAAGCACAATTAAGGTTATGT
CGACGGTACAGTCGCCTTATGCATAAAGGTAAACATCGTAATGTGGTTGTGACAGCAATTGCTAGAGAAATGATTGCTTATATTTGGGCAATATCCAGAG
AAATAGTATTACCCGTTGTCGATGTAAAATTACGCATGGCGAGAATGCCTGCGTGAAAAAAAGTTTCGAGTTAGCGCATGGGATCAAGCATCGGGTGTGG
CACAACCACCGACGGCGTTAGGATGGTAATAGCCTAACGGCTATTGAACCGCGAAGATAGACTGAAGACAGGTGCCACGACGAAATGAGTAAGGTAGGCG
CTGCTAACTAATCGTTAGTAACCCACGAATATCAGCATGATAACCGACGAAATTACTTGCTTCATTCTATGCGTTAACTCACTTATTTTAAAAGTGAATA
GAAAAGGCTCTTATATTAATGAGCAAGGATCAGTGTATTTAACTTGACGTGGGGAGTCATACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1155 bp384 aa1021256+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MIKHNILFIGLDTHKTFTEVAYIEGQRGAKSIHLGKILSNKAAFKKLARQLQSKYPDATLHFVYEAGPCGYWIYRLLTSLHHCCYVIAPSLIPKKTGERI
KTDKRDALKLAKLLKSEDLTTIYVPEPEDEAVRDLSRSRETGMKDLKDAKYQLKALLLRNNINSKVKDNWSLQHLRWLAELVLPHPCQQIVLQEAVSTIT
ERLKRLKRLDNELTHQVKSWRYYPVVKAIQAMRGVRLLVATGVIAELGDLSRFDHPRKLMSYLGLVPSEHSSGGKRRLGAITKCGNSRARRLLVEGAHSY
KHNANISKEMQLRQEGLSKEIIDMAWQAQLRLCRRYSRLMHKGKHRNVVVTAIAREMIAYIWAISREIVLPVVDVKLRMARMPA

 

Blast result :
Comments
ISCps8 is 89% aa similar to ISSpi3. The terminal inverted repeat starts 7 bp from the 5' end and 3 bp from the 3' end.
References
1] ISfinder annotation (2011)
2] Methe,B.A., Nelson,K.E., Deming,J.W., Momen,B., Melamud,E., Zhang,X., Moult,J., Madupu,R., Nelson,W.C., Dodson,R.J., Brinkac,L.M., Daugherty,S.C., Durkin,A.S., DeBoy,R.T., Kolonay,J.F., Sullivan,S.A., Zhou,L., Davidsen,T.M., Wu,M., Huston,A.L., Lewis,M., Weaver,B., Weidman,J.F., Khouri,H., Utterback,T.R., Feldblyum,T.V. and Fraser,C.M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102 (31), 10913-10918.