ISCps8
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003910 | ND | Colwellia psychrerythraea | Colwellia psychrerythraea 34H |
DNA section
IS Length : 1563 bp
Ends
IR Length : 13
IRL : agacacaATGACTCCCCACGAGGTGCTAGCCTCTGAACGTGGGTTAGTTT
IRR : ----ggtATGACTCCCCACGTCAAGTTAAATACACTGATCCTTGCTCATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGTAAACAT | AACGCCGCAG | 0 |
DNA sequence
AGACACAATGACTCCCCACGAGGTGCTAGCCTCTGAACGTGGGTTAGTTTTACAAACCAGAGCCATAATATATGTGTCAACAATATAAAGCAGAGGCTAG
CATGATAAAACATAACATACTTTTCATTGGCTTAGATACCCACAAAACATTTACTGAAGTTGCCTACATTGAAGGCCAACGTGGCGCTAAATCAATTCAC
TTAGGTAAAATCCTCAGTAATAAAGCCGCATTTAAAAAGCTCGCTCGACAGTTACAATCAAAATACCCCGACGCTACGCTTCATTTTGTTTACGAAGCAG
GCCCTTGCGGCTATTGGATTTACCGTTTACTGACCAGCCTTCATCATTGCTGTTATGTTATTGCCCCTTCTCTTATTCCAAAAAAAACAGGAGAGCGTAT
TAAAACCGATAAACGTGATGCGCTCAAACTCGCTAAATTACTTAAATCAGAAGATCTAACTACTATCTATGTGCCTGAGCCAGAAGATGAAGCCGTGCGA
GATTTATCCCGCTCGCGTGAGACGGGCATGAAAGATTTGAAAGATGCTAAATACCAACTTAAAGCCTTATTGCTGCGTAACAACATTAACAGCAAAGTGA
AAGATAACTGGTCATTACAACATTTACGTTGGCTTGCTGAATTAGTATTACCTCATCCTTGTCAGCAAATTGTTTTACAAGAAGCCGTTTCAACTATCAC
CGAACGATTAAAGCGTCTAAAAAGGCTTGATAATGAATTAACCCATCAAGTAAAAAGTTGGCGATATTATCCTGTAGTCAAAGCGATACAAGCTATGCGT
GGTGTGAGGTTACTCGTGGCAACAGGTGTTATCGCAGAGCTGGGTGATTTATCACGATTCGATCATCCCAGAAAACTAATGAGTTACCTTGGTCTTGTGC
CAAGTGAACATTCAAGTGGCGGTAAACGCCGACTAGGTGCTATTACCAAATGTGGTAACAGCCGTGCAAGACGACTACTGGTCGAAGGTGCACACTCGTA
TAAACACAACGCCAATATTTCAAAAGAAATGCAACTAAGGCAAGAAGGATTAAGCAAAGAGATCATCGATATGGCATGGCAAGCACAATTAAGGTTATGT
CGACGGTACAGTCGCCTTATGCATAAAGGTAAACATCGTAATGTGGTTGTGACAGCAATTGCTAGAGAAATGATTGCTTATATTTGGGCAATATCCAGAG
AAATAGTATTACCCGTTGTCGATGTAAAATTACGCATGGCGAGAATGCCTGCGTGAAAAAAAGTTTCGAGTTAGCGCATGGGATCAAGCATCGGGTGTGG
CACAACCACCGACGGCGTTAGGATGGTAATAGCCTAACGGCTATTGAACCGCGAAGATAGACTGAAGACAGGTGCCACGACGAAATGAGTAAGGTAGGCG
CTGCTAACTAATCGTTAGTAACCCACGAATATCAGCATGATAACCGACGAAATTACTTGCTTCATTCTATGCGTTAACTCACTTATTTTAAAAGTGAATA
GAAAAGGCTCTTATATTAATGAGCAAGGATCAGTGTATTTAACTTGACGTGGGGAGTCATACC
CATGATAAAACATAACATACTTTTCATTGGCTTAGATACCCACAAAACATTTACTGAAGTTGCCTACATTGAAGGCCAACGTGGCGCTAAATCAATTCAC
TTAGGTAAAATCCTCAGTAATAAAGCCGCATTTAAAAAGCTCGCTCGACAGTTACAATCAAAATACCCCGACGCTACGCTTCATTTTGTTTACGAAGCAG
GCCCTTGCGGCTATTGGATTTACCGTTTACTGACCAGCCTTCATCATTGCTGTTATGTTATTGCCCCTTCTCTTATTCCAAAAAAAACAGGAGAGCGTAT
TAAAACCGATAAACGTGATGCGCTCAAACTCGCTAAATTACTTAAATCAGAAGATCTAACTACTATCTATGTGCCTGAGCCAGAAGATGAAGCCGTGCGA
GATTTATCCCGCTCGCGTGAGACGGGCATGAAAGATTTGAAAGATGCTAAATACCAACTTAAAGCCTTATTGCTGCGTAACAACATTAACAGCAAAGTGA
AAGATAACTGGTCATTACAACATTTACGTTGGCTTGCTGAATTAGTATTACCTCATCCTTGTCAGCAAATTGTTTTACAAGAAGCCGTTTCAACTATCAC
CGAACGATTAAAGCGTCTAAAAAGGCTTGATAATGAATTAACCCATCAAGTAAAAAGTTGGCGATATTATCCTGTAGTCAAAGCGATACAAGCTATGCGT
GGTGTGAGGTTACTCGTGGCAACAGGTGTTATCGCAGAGCTGGGTGATTTATCACGATTCGATCATCCCAGAAAACTAATGAGTTACCTTGGTCTTGTGC
CAAGTGAACATTCAAGTGGCGGTAAACGCCGACTAGGTGCTATTACCAAATGTGGTAACAGCCGTGCAAGACGACTACTGGTCGAAGGTGCACACTCGTA
TAAACACAACGCCAATATTTCAAAAGAAATGCAACTAAGGCAAGAAGGATTAAGCAAAGAGATCATCGATATGGCATGGCAAGCACAATTAAGGTTATGT
CGACGGTACAGTCGCCTTATGCATAAAGGTAAACATCGTAATGTGGTTGTGACAGCAATTGCTAGAGAAATGATTGCTTATATTTGGGCAATATCCAGAG
AAATAGTATTACCCGTTGTCGATGTAAAATTACGCATGGCGAGAATGCCTGCGTGAAAAAAAGTTTCGAGTTAGCGCATGGGATCAAGCATCGGGTGTGG
CACAACCACCGACGGCGTTAGGATGGTAATAGCCTAACGGCTATTGAACCGCGAAGATAGACTGAAGACAGGTGCCACGACGAAATGAGTAAGGTAGGCG
CTGCTAACTAATCGTTAGTAACCCACGAATATCAGCATGATAACCGACGAAATTACTTGCTTCATTCTATGCGTTAACTCACTTATTTTAAAAGTGAATA
GAAAAGGCTCTTATATTAATGAGCAAGGATCAGTGTATTTAACTTGACGTGGGGAGTCATACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1155 bp | 384 aa | 102 | 1256 | + | No |
Chemistry : DEDD
ORF sequence :
MIKHNILFIGLDTHKTFTEVAYIEGQRGAKSIHLGKILSNKAAFKKLARQLQSKYPDATLHFVYEAGPCGYWIYRLLTSLHHCCYVIAPSLIPKKTGERI
KTDKRDALKLAKLLKSEDLTTIYVPEPEDEAVRDLSRSRETGMKDLKDAKYQLKALLLRNNINSKVKDNWSLQHLRWLAELVLPHPCQQIVLQEAVSTIT
ERLKRLKRLDNELTHQVKSWRYYPVVKAIQAMRGVRLLVATGVIAELGDLSRFDHPRKLMSYLGLVPSEHSSGGKRRLGAITKCGNSRARRLLVEGAHSY
KHNANISKEMQLRQEGLSKEIIDMAWQAQLRLCRRYSRLMHKGKHRNVVVTAIAREMIAYIWAISREIVLPVVDVKLRMARMPA
KTDKRDALKLAKLLKSEDLTTIYVPEPEDEAVRDLSRSRETGMKDLKDAKYQLKALLLRNNINSKVKDNWSLQHLRWLAELVLPHPCQQIVLQEAVSTIT
ERLKRLKRLDNELTHQVKSWRYYPVVKAIQAMRGVRLLVATGVIAELGDLSRFDHPRKLMSYLGLVPSEHSSGGKRRLGAITKCGNSRARRLLVEGAHSY
KHNANISKEMQLRQEGLSKEIIDMAWQAQLRLCRRYSRLMHKGKHRNVVVTAIAREMIAYIWAISREIVLPVVDVKLRMARMPA
Blast result :
Comments
ISCps8 is 89% aa similar to ISSpi3. The terminal inverted repeat starts 7 bp from the 5' end and 3 bp from the 3' end.
References
1] ISfinder annotation (2011)
2] Methe,B.A., Nelson,K.E., Deming,J.W., Momen,B., Melamud,E., Zhang,X., Moult,J., Madupu,R., Nelson,W.C., Dodson,R.J., Brinkac,L.M., Daugherty,S.C., Durkin,A.S., DeBoy,R.T., Kolonay,J.F., Sullivan,S.A., Zhou,L., Davidsen,T.M., Wu,M., Huston,A.L., Lewis,M., Weaver,B., Weidman,J.F., Khouri,H., Utterback,T.R., Feldblyum,T.V. and Fraser,C.M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102 (31), 10913-10918.
2] Methe,B.A., Nelson,K.E., Deming,J.W., Momen,B., Melamud,E., Zhang,X., Moult,J., Madupu,R., Nelson,W.C., Dodson,R.J., Brinkac,L.M., Daugherty,S.C., Durkin,A.S., DeBoy,R.T., Kolonay,J.F., Sullivan,S.A., Zhou,L., Davidsen,T.M., Wu,M., Huston,A.L., Lewis,M., Weaver,B., Weidman,J.F., Khouri,H., Utterback,T.R., Feldblyum,T.V. and Fraser,C.M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102 (31), 10913-10918.