ISWpi10
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Wolbachia pipientis | Wolbachia pipientis Wolbachia endosymbiont of Culex quinquefasciatus Pel |
DNA section
IS Length : 1100 bp
Ends
IR Length : 15/20
IRL : TACCAATTCCCACTATGTAAAGAACAGATAGACAATAATGGGAAAGAAGT
IRR : TACCAAATTCCATTACTAATCGAACAAATAAGAAACATTACAAACTCGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATTTAAACG | TAA | GTATTCCAAA | 3 |
AGGGCTATAC | TGA | GAGGTTGTCC | 3 |
GGACAACCTC | TTA | CAATATCATC | 3 |
GGACAACCTC | TTA | GTTAATTTGT | 3 |
AAAAACGTCGTTA | TGAGAGGTTGTCC | 0 | |
TATTTCATCG | TCA | GAGGTTGTCC | 3 |
GGACAACCTC | TTA | CATAACCATA | 3 |
GGACAACCTC | TTA | GAGGTTGTCC | 3 |
DNA sequence
TACCAATTCCCACTATGTAAAGAACAGATAGACAATAATGGGAAAGAAGTGATACTAAAGTAGATAAAATAGAGAGGTATAAATGGCATTAAGGTCAAAA
CTGTTAGACGAAAAAGTTGTAAATTTGGCGAAAGAAATGTTAAAAAAGGTCAGAAATAACGCATATGTTTCAAAAAAGTTACAAGCGGTGATAGCAGGAA
AAGAAAGTAGTATAAGCGCTGTGGCAAGAATATGTAAAATTTCAAGGACTGCTTTGACTGAATGGATAAAGCATCTAAAATTTGGTAGAGTAGAAAAATT
ATTTTCCCCTTCTCAGCGGCGAAGAAAAAGCAAATTAAACAAAAATCAACGTGAGCAAATTGAAATATGGGTAGAAAGAAATCCAAATATTACTATTAAG
GAAGTGCAAATAAAAATCTCAGAGGAATTTGGCCTAAACATTAGCAAATCAACAGTGCATCGTGAGATACAAAGGATGAAGTTTTCTTACATAACACCGA
GGCCAATTCACCATAAACAAGATAAAAACAAGCAAGAAGAGTTTAAAAAATACTTCAATAAAATAGTCAATTCCCACCCTGAAAAGGAGGTATTTTTTTG
ATGAATCACGATTTGGAACTCATTCAAAAATCGGACATGGATGGTTTAAAAAAGGGGTCAGAACGCAGGTTAAAATGAAAATTGGTAGACAAAATTTCTA
TATCTACAGTGCGGTAAATCCAAGAAGTGGTAAGAAAATTAGCCTACTTGCTCCATATGTAAACACTGATTGTATGAATATATTTCTGGAGCAGATGTCG
AAAGATTTAGGCACGAAAAAAGCCTTTCTTGTAATGGATTGTGCAGGCTGGCATAGATCAAAAAGTTTGAAAATTCAGAAAAACATTACCATTATATACT
TGCCTCCTTATTCACCAGAACTGAATCCTGTTGAGAGGTTGTGGCAATATATCAAACACAATACTTTACGCAACAGAGTCTACGATACCATAGGCTTACT
TGAAGATGTTCTGTGTAATTTTATTGTCAGTATTTCCAGTGCTACTATTAAACGAGTTTGTAATGTTTCTTATTTGTTCGATTAGTAATGGAATTTGGTA
CTGTTAGACGAAAAAGTTGTAAATTTGGCGAAAGAAATGTTAAAAAAGGTCAGAAATAACGCATATGTTTCAAAAAAGTTACAAGCGGTGATAGCAGGAA
AAGAAAGTAGTATAAGCGCTGTGGCAAGAATATGTAAAATTTCAAGGACTGCTTTGACTGAATGGATAAAGCATCTAAAATTTGGTAGAGTAGAAAAATT
ATTTTCCCCTTCTCAGCGGCGAAGAAAAAGCAAATTAAACAAAAATCAACGTGAGCAAATTGAAATATGGGTAGAAAGAAATCCAAATATTACTATTAAG
GAAGTGCAAATAAAAATCTCAGAGGAATTTGGCCTAAACATTAGCAAATCAACAGTGCATCGTGAGATACAAAGGATGAAGTTTTCTTACATAACACCGA
GGCCAATTCACCATAAACAAGATAAAAACAAGCAAGAAGAGTTTAAAAAATACTTCAATAAAATAGTCAATTCCCACCCTGAAAAGGAGGTATTTTTTTG
ATGAATCACGATTTGGAACTCATTCAAAAATCGGACATGGATGGTTTAAAAAAGGGGTCAGAACGCAGGTTAAAATGAAAATTGGTAGACAAAATTTCTA
TATCTACAGTGCGGTAAATCCAAGAAGTGGTAAGAAAATTAGCCTACTTGCTCCATATGTAAACACTGATTGTATGAATATATTTCTGGAGCAGATGTCG
AAAGATTTAGGCACGAAAAAAGCCTTTCTTGTAATGGATTGTGCAGGCTGGCATAGATCAAAAAGTTTGAAAATTCAGAAAAACATTACCATTATATACT
TGCCTCCTTATTCACCAGAACTGAATCCTGTTGAGAGGTTGTGGCAATATATCAAACACAATACTTTACGCAACAGAGTCTACGATACCATAGGCTTACT
TGAAGATGTTCTGTGTAATTTTATTGTCAGTATTTCCAGTGCTACTATTAAACGAGTTTGTAATGTTTCTTATTTGTTCGATTAGTAATGGAATTTGGTA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
519 bp | 172 aa | 83 | 601 | + | No |
Description : First part of the transposase
ORF sequence :
MALRSKLLDEKVVNLAKEMLKKVRNNAYVSKKLQAVIAGKESSISAVARICKISRTALTEWIKHLKFGRVEKLFSPSQRRRKSKLNKNQREQIEIWVERN
PNITIKEVQIKISEEFGLNISKSTVHREIQRMKFSYITPRPIHHKQDKNKQEEFKKYFNKIVNSHPEKEVFF
PNITIKEVQIKISEEFGLNISKSTVHREIQRMKFSYITPRPIHHKQDKNKQEEFKKYFNKIVNSHPEKEVFF
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
519 bp | 172 aa | 567 | 1085 | + | No |
Description : Second part of the transposase
ORF sequence :
SIPTLKRRYFFDESRFGTHSKIGHGWFKKGVRTQVKMKIGRQNFYIYSAVNPRSGKKISLLAPYVNTDCMNIFLEQMSKDLGTKKAFLVMDCAGWHRSKS
LKIQKNITIIYLPPYSPELNPVERLWQYIKHNTLRNRVYDTIGLLEDVLCNFIVSISSATIKRVCNVSYLFD
LKIQKNITIIYLPPYSPELNPVERLWQYIKHNTLRNRVYDTIGLLEDVLCNFIVSISSATIKRVCNVSYLFD
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1003 bp | 333 aa | 83 | 1085 | + | Yes |
Chemistry : DDE
ORF sequence :
MALRSKLLDEKVVNLAKEMLKKVRNNAYVSKKLQAVIAGKESSISAVARICKISRTALTEWIKHLKFGRVEKLFSPSQRRRKSKLNKNQREQIEIWVERN
PNITIKEVQIKISEEFGLNISKSTVHREIQRMKFSYITPRPIHHKQDKNKQEEFKKYFNKIVNSHPEKEVFFDESRFGTHSKIGHGWFKKGVRTQVKMKI
GRQNFYIYSAVNPRSGKKISLLAPYVNTDCMNIFLEQMSKDLGTKKAFLVMDCAGWHRSKSLKIQKNITIIYLPPYSPELNPVERLWQYIKHNTLRNRVY
DTIGLLEDVLCNFIVSISSATIKRVCNVSYLFD
PNITIKEVQIKISEEFGLNISKSTVHREIQRMKFSYITPRPIHHKQDKNKQEEFKKYFNKIVNSHPEKEVFFDESRFGTHSKIGHGWFKKGVRTQVKMKI
GRQNFYIYSAVNPRSGKKISLLAPYVNTDCMNIFLEQMSKDLGTKKAFLVMDCAGWHRSKSLKIQKNITIIYLPPYSPELNPVERLWQYIKHNTLRNRVY
DTIGLLEDVLCNFIVSISSATIKRVCNVSYLFD
Blast result :
Comments
ISWpi10 transposase gene consists of two overlapping open reading frames presumably translated as a single protein via putative translational frameshifting.
Putative boundaries identified by aligning multiple copies with flanking sequences and identification of inverted repeats.
ISWpi10 is 52% aa similar to ISGdi5.
Putative boundaries identified by aligning multiple copies with flanking sequences and identification of inverted repeats.
ISWpi10 is 52% aa similar to ISGdi5.
References
1] Cerveau N., and Cordaux R.(2010) Direct submission (manuscript in preparation)