ISWpi13
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Wolbachia pipientis | Wolbachia pipientis Wolbachia sp. wRi Wolbachia endosymbiont of Drosophila simulans |
DNA section
IS Length : 1618 bp
Ends
Left end : CAACGAACAGATAAAATCTGTTAAACGATGAAGAAACTCCATTACTTATGCTTTTAACAGTCTTTGAGTATAATTTTGTGGAAGCGCTTTTGCAGTTATA
Right end : CTATATAAGGAGAGAGTATTGAAAAATTTAAGCAAAAAGGCCAGTGAACTTGGTTATGTTTTAACAAAAAAACATGAACTAATATAGGGAGTTTGTTAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGAGGCAAG | AGTGATAGTT | 0 |
DNA sequence
CAACGAACAGATAAAATCTGTTAAACGATGAAGAAACTCCATTACTTATGCTTTTAACAGTCTTTGAGTATAATTTTGTGGAAGCGCTTTTGCAGTTATA
ACCGGACTATCCAATGGTGCCATAAGTGCCCGCAGGCAAGCATGGTTTTGGAGGAAACGGTTAAACTATTGATGGAGTCTTTTAGACTACCTCGCTTAGA
AGATTGTATAATCTAACCGTCCCCAAGCTGAAGCGCTTCTCCATTATAAGTTATATAGGAGGAATTTGACATGACAAAAGCAAAAAGTAAATTAGAAATA
GTGAATCCGAATGCATCAGGAATAGACATTGGTTCAGCCGTACACTATGTATGCGTACCTGAGGGAAGAGATAAACAACGTGTTCAGAAATTTGGCTGCT
TTACTGCAGACCTTCATAATTTGGCACGCTGGTTGAAGAAGTGCAAAGTTACAACTGTGGCAATGGAATCAACAGGAGTGTACTGGATTTCTTTATTTCA
AATACTTGAATCATATGAATTCGAGGTCAAGTTGGTAAATGCACGACATGTAAAGAATGTACCTGGCAGGAAGTCTGACGTTCAAGATTGCCAATGGCTT
CAACAATTGCATAGCTACGGATTGCTTCGTGGATCATTTAGACCAGATAATCAGATGTGTGTATTGCGTAGTTATGTGCGGCAACGTAAAAAACTTACTG
AGAGTGCATCCACGCATGTTCTGCGTATGCAGAAGGCATTAATTCAAATGAATATTCAATTACACAAGGTTATTAGCAATATTACTGGAGTGACTGGTAT
GAAAATCATTGAGGCTATAATTGAAGGCGAAAGAAATCCTGAGAAATTGGCTGAATTCAGAAGCTCGAATATAAAGAATGATAAAGCTACTATAGCAAAA
GCATTAACAGGAGACTATAGAGAAGAACATTTGTTTGTATTAAAACAAGAACTTGAGCTATATAATATTTACCAGGAAAAAATAGCAGAGTGTGATGAAA
ATATAGAGAATTACTATAAAACATTTGAAACAAAATTCTGTGGAAATAAGCAATGTAGTAAAATAAAGAATAGGTCTACAAAAAACAGGCCAAACTTTTC
TATACATGAGGAATTGCATAGAGTAACAGGTATGGATTTCACTAAAGTTCCAGGGCTTGATGCATTAAGCATACAAACCATAATTTCAGAAACTGGTATA
AATCACAATAAATGGCCAACAGAAAAGCACTTTTCGTCGTGGTTGGGACTCAGTCCTGCTAATAAAATTACAGGAGAAAAAGTGTTTAGCACAAGAACGT
GTAGAGTCATTAATCGTGCTGCGAATGCATTTCGAATGGCTGCTCACTGTGTATCAAGAAGCAACAGCGGAATAGGTGCATATTGTAGAAGATTAAAGAA
ACGACTAGGTGCACCAAAAGCGATTACTGCTACGGCAAGGAAATTAGCATGTATCTTTTACAGTATGCTAAAGCATGGACAAGAGTATGTTGAGAAAGGG
ATTGACTACTATGAGAAACTATATAAGGAGAGAGTATTGAAAAATTTAAGCAAAAAGGCCAGTGAACTTGGTTATGTTTTAACAAAAAAACATGAACTAA
TATAGGGAGTTTGTTAGA
ACCGGACTATCCAATGGTGCCATAAGTGCCCGCAGGCAAGCATGGTTTTGGAGGAAACGGTTAAACTATTGATGGAGTCTTTTAGACTACCTCGCTTAGA
AGATTGTATAATCTAACCGTCCCCAAGCTGAAGCGCTTCTCCATTATAAGTTATATAGGAGGAATTTGACATGACAAAAGCAAAAAGTAAATTAGAAATA
GTGAATCCGAATGCATCAGGAATAGACATTGGTTCAGCCGTACACTATGTATGCGTACCTGAGGGAAGAGATAAACAACGTGTTCAGAAATTTGGCTGCT
TTACTGCAGACCTTCATAATTTGGCACGCTGGTTGAAGAAGTGCAAAGTTACAACTGTGGCAATGGAATCAACAGGAGTGTACTGGATTTCTTTATTTCA
AATACTTGAATCATATGAATTCGAGGTCAAGTTGGTAAATGCACGACATGTAAAGAATGTACCTGGCAGGAAGTCTGACGTTCAAGATTGCCAATGGCTT
CAACAATTGCATAGCTACGGATTGCTTCGTGGATCATTTAGACCAGATAATCAGATGTGTGTATTGCGTAGTTATGTGCGGCAACGTAAAAAACTTACTG
AGAGTGCATCCACGCATGTTCTGCGTATGCAGAAGGCATTAATTCAAATGAATATTCAATTACACAAGGTTATTAGCAATATTACTGGAGTGACTGGTAT
GAAAATCATTGAGGCTATAATTGAAGGCGAAAGAAATCCTGAGAAATTGGCTGAATTCAGAAGCTCGAATATAAAGAATGATAAAGCTACTATAGCAAAA
GCATTAACAGGAGACTATAGAGAAGAACATTTGTTTGTATTAAAACAAGAACTTGAGCTATATAATATTTACCAGGAAAAAATAGCAGAGTGTGATGAAA
ATATAGAGAATTACTATAAAACATTTGAAACAAAATTCTGTGGAAATAAGCAATGTAGTAAAATAAAGAATAGGTCTACAAAAAACAGGCCAAACTTTTC
TATACATGAGGAATTGCATAGAGTAACAGGTATGGATTTCACTAAAGTTCCAGGGCTTGATGCATTAAGCATACAAACCATAATTTCAGAAACTGGTATA
AATCACAATAAATGGCCAACAGAAAAGCACTTTTCGTCGTGGTTGGGACTCAGTCCTGCTAATAAAATTACAGGAGAAAAAGTGTTTAGCACAAGAACGT
GTAGAGTCATTAATCGTGCTGCGAATGCATTTCGAATGGCTGCTCACTGTGTATCAAGAAGCAACAGCGGAATAGGTGCATATTGTAGAAGATTAAAGAA
ACGACTAGGTGCACCAAAAGCGATTACTGCTACGGCAAGGAAATTAGCATGTATCTTTTACAGTATGCTAAAGCATGGACAAGAGTATGTTGAGAAAGGG
ATTGACTACTATGAGAAACTATATAAGGAGAGAGTATTGAAAAATTTAAGCAAAAAGGCCAGTGAACTTGGTTATGTTTTAACAAAAAAACATGAACTAA
TATAGGGAGTTTGTTAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1335 bp | 444 aa | 271 | 1605 | + | No |
Chemistry : DEDD
ORF sequence :
MTKAKSKLEIVNPNASGIDIGSAVHYVCVPEGRDKQRVQKFGCFTADLHNLARWLKKCKVTTVAMESTGVYWISLFQILESYEFEVKLVNARHVKNVPGR
KSDVQDCQWLQQLHSYGLLRGSFRPDNQMCVLRSYVRQRKKLTESASTHVLRMQKALIQMNIQLHKVISNITGVTGMKIIEAIIEGERNPEKLAEFRSSN
IKNDKATIAKALTGDYREEHLFVLKQELELYNIYQEKIAECDENIENYYKTFETKFCGNKQCSKIKNRSTKNRPNFSIHEELHRVTGMDFTKVPGLDALS
IQTIISETGINHNKWPTEKHFSSWLGLSPANKITGEKVFSTRTCRVINRAANAFRMAAHCVSRSNSGIGAYCRRLKKRLGAPKAITATARKLACIFYSML
KHGQEYVEKGIDYYEKLYKERVLKNLSKKASELGYVLTKKHELI
KSDVQDCQWLQQLHSYGLLRGSFRPDNQMCVLRSYVRQRKKLTESASTHVLRMQKALIQMNIQLHKVISNITGVTGMKIIEAIIEGERNPEKLAEFRSSN
IKNDKATIAKALTGDYREEHLFVLKQELELYNIYQEKIAECDENIENYYKTFETKFCGNKQCSKIKNRSTKNRPNFSIHEELHRVTGMDFTKVPGLDALS
IQTIISETGINHNKWPTEKHFSSWLGLSPANKITGEKVFSTRTCRVINRAANAFRMAAHCVSRSNSGIGAYCRRLKKRLGAPKAITATARKLACIFYSML
KHGQEYVEKGIDYYEKLYKERVLKNLSKKASELGYVLTKKHELI
Blast result :
Comments
Putative boundaries identified by aligning IS flanks with an empty insertion site.
ISWpi13 is 63% aa similar to ISCARN20.
ISWpi13 is 63% aa similar to ISCARN20.
References
1] Cerveau N., and Cordaux R. (2010) Direct submission (manuscript in preparation)