ISWpi13

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Wolbachia pipientis
Wolbachia pipientis
Wolbachia sp. wRi
Wolbachia endosymbiont of Drosophila simulans
DNA section
IS Length : 1618 bp

Ends


Left end : CAACGAACAGATAAAATCTGTTAAACGATGAAGAAACTCCATTACTTATGCTTTTAACAGTCTTTGAGTATAATTTTGTGGAAGCGCTTTTGCAGTTATA
Right end : CTATATAAGGAGAGAGTATTGAAAAATTTAAGCAAAAAGGCCAGTGAACTTGGTTATGTTTTAACAAAAAAACATGAACTAATATAGGGAGTTTGTTAGA

Insertion site


Left flankDirect repeatRight flankDR Length
TTGAGGCAAGAGTGATAGTT0

DNA sequence

CAACGAACAGATAAAATCTGTTAAACGATGAAGAAACTCCATTACTTATGCTTTTAACAGTCTTTGAGTATAATTTTGTGGAAGCGCTTTTGCAGTTATA
ACCGGACTATCCAATGGTGCCATAAGTGCCCGCAGGCAAGCATGGTTTTGGAGGAAACGGTTAAACTATTGATGGAGTCTTTTAGACTACCTCGCTTAGA
AGATTGTATAATCTAACCGTCCCCAAGCTGAAGCGCTTCTCCATTATAAGTTATATAGGAGGAATTTGACATGACAAAAGCAAAAAGTAAATTAGAAATA
GTGAATCCGAATGCATCAGGAATAGACATTGGTTCAGCCGTACACTATGTATGCGTACCTGAGGGAAGAGATAAACAACGTGTTCAGAAATTTGGCTGCT
TTACTGCAGACCTTCATAATTTGGCACGCTGGTTGAAGAAGTGCAAAGTTACAACTGTGGCAATGGAATCAACAGGAGTGTACTGGATTTCTTTATTTCA
AATACTTGAATCATATGAATTCGAGGTCAAGTTGGTAAATGCACGACATGTAAAGAATGTACCTGGCAGGAAGTCTGACGTTCAAGATTGCCAATGGCTT
CAACAATTGCATAGCTACGGATTGCTTCGTGGATCATTTAGACCAGATAATCAGATGTGTGTATTGCGTAGTTATGTGCGGCAACGTAAAAAACTTACTG
AGAGTGCATCCACGCATGTTCTGCGTATGCAGAAGGCATTAATTCAAATGAATATTCAATTACACAAGGTTATTAGCAATATTACTGGAGTGACTGGTAT
GAAAATCATTGAGGCTATAATTGAAGGCGAAAGAAATCCTGAGAAATTGGCTGAATTCAGAAGCTCGAATATAAAGAATGATAAAGCTACTATAGCAAAA
GCATTAACAGGAGACTATAGAGAAGAACATTTGTTTGTATTAAAACAAGAACTTGAGCTATATAATATTTACCAGGAAAAAATAGCAGAGTGTGATGAAA
ATATAGAGAATTACTATAAAACATTTGAAACAAAATTCTGTGGAAATAAGCAATGTAGTAAAATAAAGAATAGGTCTACAAAAAACAGGCCAAACTTTTC
TATACATGAGGAATTGCATAGAGTAACAGGTATGGATTTCACTAAAGTTCCAGGGCTTGATGCATTAAGCATACAAACCATAATTTCAGAAACTGGTATA
AATCACAATAAATGGCCAACAGAAAAGCACTTTTCGTCGTGGTTGGGACTCAGTCCTGCTAATAAAATTACAGGAGAAAAAGTGTTTAGCACAAGAACGT
GTAGAGTCATTAATCGTGCTGCGAATGCATTTCGAATGGCTGCTCACTGTGTATCAAGAAGCAACAGCGGAATAGGTGCATATTGTAGAAGATTAAAGAA
ACGACTAGGTGCACCAAAAGCGATTACTGCTACGGCAAGGAAATTAGCATGTATCTTTTACAGTATGCTAAAGCATGGACAAGAGTATGTTGAGAAAGGG
ATTGACTACTATGAGAAACTATATAAGGAGAGAGTATTGAAAAATTTAAGCAAAAAGGCCAGTGAACTTGGTTATGTTTTAACAAAAAAACATGAACTAA
TATAGGGAGTTTGTTAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1335 bp444 aa2711605+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTKAKSKLEIVNPNASGIDIGSAVHYVCVPEGRDKQRVQKFGCFTADLHNLARWLKKCKVTTVAMESTGVYWISLFQILESYEFEVKLVNARHVKNVPGR
KSDVQDCQWLQQLHSYGLLRGSFRPDNQMCVLRSYVRQRKKLTESASTHVLRMQKALIQMNIQLHKVISNITGVTGMKIIEAIIEGERNPEKLAEFRSSN
IKNDKATIAKALTGDYREEHLFVLKQELELYNIYQEKIAECDENIENYYKTFETKFCGNKQCSKIKNRSTKNRPNFSIHEELHRVTGMDFTKVPGLDALS
IQTIISETGINHNKWPTEKHFSSWLGLSPANKITGEKVFSTRTCRVINRAANAFRMAAHCVSRSNSGIGAYCRRLKKRLGAPKAITATARKLACIFYSML
KHGQEYVEKGIDYYEKLYKERVLKNLSKKASELGYVLTKKHELI

 

Blast result :
Comments
Putative boundaries identified by aligning IS flanks with an empty insertion site.
ISWpi13 is 63% aa similar to ISCARN20.
References
1] Cerveau N., and Cordaux R. (2010) Direct submission (manuscript in preparation)