ISWpi12

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Wolbachia pipientis
Wolbachia pipientis
Wolbachia endosymbiont of Culex quinquefasciatus Pel
DNA section
IS Length : 1384 bp

Ends


Left end : AATATTGTAAGTCAAAAATATGATATAAAGGAAATAAGAGGGAAAGATAACCCTACTCACTATAGGAATAGGGTTATCACGGGCGTGTGCGACCGGCAGA
Right end : ATAGAATTCTGTTTCTATGACAAACGGGTTTTTATTATCTATATGGTTGGGTAAAGTTGCAAAATTATACAAATAAAAAATTTAAAAAACATAGTTGATG

Insertion site


Left flankDirect repeatRight flankDR Length
ATAGCTCCAGAACCGTGAGT0
CCAACTCCAAGAATGCAGAG0
AAACATCAAGGAATAAAGTT0

DNA sequence

AATATTGTAAGTCAAAAATATGATATAAAGGAAATAAGAGGGAAAGATAACCCTACTCACTATAGGAATAGGGTTATCACGGGCGTGTGCGACCGGCAGA
ATATTGGTATTACAACCGTGTCCATCAAGGTACACTAGCCCATCTCTCGATACGTTTGAATAGTTGTGTGGGACATGTATATGCACCCGTTTACAATCTT
AAATTAATTAAACTATCGAGGTTATAATGATTACATCTTATCAAAATTTTATTGGCATTGATATCGGGAAATTTAAAAATGTTGTTGCAGTTCACGAACA
GAAGAATACTGTAGGATTTGACAATAATACTTCTGGCTGGCAACAATTGTTTCAAAAGTTTTCAGATATCCTACCTAATTCTTTAGTAACTTTAGAAAAT
ACAGGAAAGTATGAGCTTGGTTTATTACATTTTCTTGTTGACAAAAATATTGCCACACATCGAGCTAATACCCGTAAAGTAAAAAGCTTTATCTTGTCTC
ACGGAACTTTAGCAAAGTCTGATAAATCAGATGCAAGAGCTCTTGCTCAATATGGATTTGAACGCCACAGCACTATCTCTCTATTTGTACCCACTTTTGA
AAATCAATCAACCTTGGTTGCACTTTGTCAACGTCGTGATGACATTACGCAAATGAGAGCTCAGGAAAAATGTAGACTGGCAGCACCTGAAAATGACCAT
ATAAAAGAAAGTTGTCAAAAAACTATCGAATTCTTTAATATTCAAATAGATGAACTCAATAATACTATACAAAAAATTATTGATGAAAGCCGTGAGTTAC
AACAACGTCAAAAAATCCTAAAAACAGTTCCTGGAATAGGTCCAAAGTTATCTCAAGATTTTCTCTGTTTAATGCCAGAGCTTGGTTACTTAAGCAGGAG
AGAAGTTGCAAGCCTTGCTGGGGTTGCACCTTATCCAAAAGAAAGTGGTAAAACTATTGGATACCGAAGAATAACAGGTGGTAGAAGCAATGTTCGTGCA
AAACTTTTTACATCTGCCATGGCTGCTGCAAAGTCCAAATCTGTACTTGGTGCCTTTTATTCTAAGCTTGTTGAAAGTGGTAAGAAGAAGATGGTAGCTA
TAACAGCTCTAATGCGTAAAATTATAGTAATTGCTAACGCAAGGCTTAAAGAAGCAATTAATTTGAATATTTAAAATTTACATAGCAGTAATTGAAATGA
ATATTGTGAATAAGCACGTCCGCACAAACTTAAAGTGCTTATTCACAATAGCTTAAACGGAAATTGTTGCAGCAGCTGTTTGATATAGAATTCTGTTTCT
ATGACAAACGGGTTTTTATTATCTATATGGTTGGGTAAAGTTGCAAAATTATACAAATAAAAAATTTAAAAAACATAGTTGATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa2271174+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MITSYQNFIGIDIGKFKNVVAVHEQKNTVGFDNNTSGWQQLFQKFSDILPNSLVTLENTGKYELGLLHFLVDKNIATHRANTRKVKSFILSHGTLAKSDK
SDARALAQYGFERHSTISLFVPTFENQSTLVALCQRRDDITQMRAQEKCRLAAPENDHIKESCQKTIEFFNIQIDELNNTIQKIIDESRELQQRQKILKT
VPGIGPKLSQDFLCLMPELGYLSRREVASLAGVAPYPKESGKTIGYRRITGGRSNVRAKLFTSAMAAAKSKSVLGAFYSKLVESGKKKMVAITALMRKII
VIANARLKEAINLNI

 

Blast result :
Comments
Putative boundaries identified by aligning multiple copies with flanking sequences.
ISWpi12 is 54% aa similar to ISMex17.
References
1] Cerveau N., and Cordaux R. (2010) Direct submission (manuscript in preparation)