ISWpi11
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Wolbachia pipientis | Wolbachia pipientis Wolbachia endosymbiont of Culex quinquefasciatus Pel |
DNA section
IS Length : 945 bp
Ends
IR Length : 22/23
IRL : GCTCTTTTCATAATAGTCCAAACGAGGTAAAATAAGTTTTTATAGTAGTG
IRR : GCTCTTTTCATAATAGTCCGAAAAGCTTATAGAAAAGCAGAATCAACAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTAATATTA | TATA | ACTGCTTAAA | 4 |
TGTCTTCTAT | TATA | CTTGCTGATC | 4 |
AAAGCGTTAG | TATA | ATTATCACGT | 4 |
AGACAATAGT | TATA | CTTTCAACCA | 4 |
DNA sequence
GCTCTTTTCATAATAGTCCAAACGAGGTAAAATAAGTTTTTATAGTAGTGAAGGTAAGTATGCCAGCAGCATATAGTTATGATTTAAGAAAAAAAGCAAT
GGAAGTACTAGAAGAAGGGGAAAGGAGAGAAACAGTGGCAGCAAGATTTAAAATTGGAAAAACTACATTATGGGAGTGGCAGCAAAGAAAAAAAGAAACA
GGAGATTTTCAGTCAAAAAAACTTGGAAATGTAGGTTATAATCACAAAATTACCGACAGGAATAAATTTACTGAATTTGCCAAAAAACATGGTGGAAAAA
CTCTATCGGAAATGGCTAAGCTTTGGGGCAATGTTAGTATCACAACGATCCATCGAGCTCTTAAAAAAATTGGACTCACACGCAAAAAAAGACATATGGA
TACAAAGAAAGGAACGAAGAAAAACGCGCTGAATTTTTGAAAATTATAGCAACAAAAGAACCTCAAAACTTAGTATATATAGATGAGTCTGGCATTGATA
ACACTGAGGACTACCCTTATGGATATTGCCAGAAGGGACAGCGCTTTTATGCTCTAAAATCTGGTAAAAAAATTCAACGAATCAGTATGATTGCAGCCTT
AAACGGCAGAAAAATAGCTGTTCCGTTAACATTTGAAGGCCACTGTAATATGGATATCTTTAATAAATGGTTTGAGCAGTTCCTGACACCGATTTTGGAA
CCTGGACAAACTGTTATCCTTGATAATGCTACTTTTCATAAGTCTAATAAGATTACTGAACTTGCTAAAGGAGTTGGTGCAGAAATTTTATATCTACCGC
CTTATTCTCCCGATTTTAACAAAATTGAGCATCATTGGTTTGCTATAAAAAACAGAGCTAGGAAAAACATCCCTCTATTCACATCTTTTCGTCATGCTGT
TGATTCTGCTTTTCTATAAGCTTTTCGGACTATTATGAAAAGAGC
GGAAGTACTAGAAGAAGGGGAAAGGAGAGAAACAGTGGCAGCAAGATTTAAAATTGGAAAAACTACATTATGGGAGTGGCAGCAAAGAAAAAAAGAAACA
GGAGATTTTCAGTCAAAAAAACTTGGAAATGTAGGTTATAATCACAAAATTACCGACAGGAATAAATTTACTGAATTTGCCAAAAAACATGGTGGAAAAA
CTCTATCGGAAATGGCTAAGCTTTGGGGCAATGTTAGTATCACAACGATCCATCGAGCTCTTAAAAAAATTGGACTCACACGCAAAAAAAGACATATGGA
TACAAAGAAAGGAACGAAGAAAAACGCGCTGAATTTTTGAAAATTATAGCAACAAAAGAACCTCAAAACTTAGTATATATAGATGAGTCTGGCATTGATA
ACACTGAGGACTACCCTTATGGATATTGCCAGAAGGGACAGCGCTTTTATGCTCTAAAATCTGGTAAAAAAATTCAACGAATCAGTATGATTGCAGCCTT
AAACGGCAGAAAAATAGCTGTTCCGTTAACATTTGAAGGCCACTGTAATATGGATATCTTTAATAAATGGTTTGAGCAGTTCCTGACACCGATTTTGGAA
CCTGGACAAACTGTTATCCTTGATAATGCTACTTTTCATAAGTCTAATAAGATTACTGAACTTGCTAAAGGAGTTGGTGCAGAAATTTTATATCTACCGC
CTTATTCTCCCGATTTTAACAAAATTGAGCATCATTGGTTTGCTATAAAAAACAGAGCTAGGAAAAACATCCCTCTATTCACATCTTTTCGTCATGCTGT
TGATTCTGCTTTTCTATAAGCTTTTCGGACTATTATGAAAAGAGC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
381 bp | 126 aa | 60 | 440 | + | No |
Description : First part of the transposase
ORF sequence :
MPAAYSYDLRKKAMEVLEEGERRETVAARFKIGKTTLWEWQQRKKETGDFQSKKLGNVGYNHKITDRNKFTEFAKKHGGKTLSEMAKLWGNVSITTIHRA
LKKIGLTRKKRHMDTKKGTKKNALNF
LKKIGLTRKKRHMDTKKGTKKNALNF
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
555 bp | 184 aa | 365 | 919 | + | No |
Description : Second part of the transposase
ORF sequence :
KNWTHTQKKTYGYKERNEEKRAEFLKIIATKEPQNLVYIDESGIDNTEDYPYGYCQKGQRFYALKSGKKIQRISMIAALNGRKIAVPLTFEGHCNMDIFN
KWFEQFLTPILEPGQTVILDNATFHKSNKITELAKGVGAEILYLPPYSPDFNKIEHHWFAIKNRARKNIPLFTSFRHAVDSAFL
KWFEQFLTPILEPGQTVILDNATFHKSNKITELAKGVGAEILYLPPYSPDFNKIEHHWFAIKNRARKNIPLFTSFRHAVDSAFL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
860 bp | 286 aa | 60 | 919 | + | Yes |
Chemistry : DDE
ORF sequence :
MPAAYSYDLRKKAMEVLEEGERRETVAARFKIGKTTLWEWQQRKKETGDFQSKKLGNVGYNHKITDRNKFTEFAKKHGGKTLSEMAKLWGNVSITTIHRA
LKKIGLTRKKKTYGYKERNEEKRAEFLKIIATKEPQNLVYIDESGIDNTEDYPYGYCQKGQRFYALKSGKKIQRISMIAALNGRKIAVPLTFEGHCNMDI
FNKWFEQFLTPILEPGQTVILDNATFHKSNKITELAKGVGAEILYLPPYSPDFNKIEHHWFAIKNRARKNIPLFTSFRHAVDSAFL
LKKIGLTRKKKTYGYKERNEEKRAEFLKIIATKEPQNLVYIDESGIDNTEDYPYGYCQKGQRFYALKSGKKIQRISMIAALNGRKIAVPLTFEGHCNMDI
FNKWFEQFLTPILEPGQTVILDNATFHKSNKITELAKGVGAEILYLPPYSPDFNKIEHHWFAIKNRARKNIPLFTSFRHAVDSAFL
Blast result :
Comments
ISWpi11 transposase gene consists of two overlapping open reading frames presumably translated as a single protein via putative translational frameshifting.
Putative boundaries identified by aligning multiple copies with flanking sequences and identification of inverted repeats.
ISWpi11 is 66% aa similar to ISAcma31.
Putative boundaries identified by aligning multiple copies with flanking sequences and identification of inverted repeats.
ISWpi11 is 66% aa similar to ISAcma31.
References
1] Cerveau N., and Cordaux R. (2010) Direct submission (manuscript in preparation)