ISWpi15

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Wolbachia pipientis
Wolbachia pipientis
Wolbachia endosymbiont of Culex quinquefasciatus Pel
DNA section
IS Length : 1345 bp

Ends


IR Length : 29

IRL : GGGAGTGTTAAATAAACTGTGTCAAACCGAAAAAAAAGTAATAAATTGAT
IRR : GGGAGTGTTAAATAAACTGTGTCAAACCGCATTTTTAGTTCAACTCAATT

Insertion site


Left flankDirect repeatRight flankDR Length
ATGCTGTGAATGCTATAGCTGTTATTAC8
ATTTTACTCAAAAAATATTGAAACAATC8
CTAGTATCCAGAATAAAAAAATATCAAA8
TATGTTCTCAATTTTGTCATGGTGAATA8
TCTCTCTCAATCTTTGGATTTTAATCCA8
TTAAAATTGTCTTACCTGTAGAGGAGAA8
ATCTGGAGCACTTGCTGTTGGTACAAGT8
CAAAAGAGGCAGAGGCATAGTTACTTTG8
CGGTAATGGTAATCTTTGCGGAGTGGAA8
GATACATTAAAACGCTCTTCAAATGTAT8
TATTGTTCTATTAAAACAATCAAGATCA8
AGTCTTCATAg/cTATATACTTCTATAGGG10
ACAAGACATATTTTTCTGTT0
CAAGTATTTCCATATTCTCT0
TTGCTTGTATAGATTATTTA0
GTAATCTTTGTCATACGAAT0
GTGTGAAACATTTTTCTGTT0

DNA sequence

GGGAGTGTTAAATAAACTGTGTCAAACCGAAAAAAAAGTAATAAATTGATATAAAAAAATGGAGGTTTGACAATGAGTCAGAAAGTAGTAAACAGAACTA
CCGGTTTGGTAGATTATAAAGAATTAGAAACAAATATCCTGTCGTCTATACGAGAAGGAAGACCGTTGACAGGAAGAGATGGAGCATTAACACCGTTTAT
AAAAAAGTTGCTGGAGGTAAGCCTGGAAGGTGAAATAGAAAACCACTTGTCGGCCGAAAGCGAAGAGAATAATCGAAGAAATGGGAGGAATGCAAAGACT
TTACGTACAAGCGCAGGGTCATTTGAGCTTTTGACGCCAAGAGATAGGGAAGGAAGTTTCGAACCACAAATAGTCAAAAAAAGGCAAACAAACTTACATC
CAGAGCTTGAAACGAAGATTTTGAGCACATTTGCCAGTGGTATGGGCTATAGAGATATAGTGTCACATGTTGAGGAAATTTATGATCACAAAATATCGGC
GGCAGAGATATCAAGTATTACTGACAAATTGCTACCAGTAATCAACGAATGGCGTAGTCGCCCGCTGCAGTCTGTATATCCGATAGTTTTCATGGATGGC
ATGTTTTTTAAAGTCAAAGAGGACGGGCATTGCGTAAGTAAATGCATGTATAACATATTAGGCATAGATCAAAATGGCAAAAAAGAAGTATTAGGTTTTT
ATTTGGCTGAAAGTGAAGGAGCTAACTTCTGGTTGGGAGTGCTAAATGACCTCAAAGAAAGAGGAGTAGAAGATATCCTTATTGCCTGCGTTGATGGGCT
GAAAAGCTTTCCTGCAGCTATAAACAGTGTCTTTCCTAATGCGGAAGTGCAGATGTGTATAGTGCATCAGATACGCAACTCACTGAAGTATGTGGCCAGT
AAAGATGCGAAGAGTTTTTTGAGCGATTTAAAGAAGGTATATCAAGCTTCAAGCAAGGAAATTGCCGAGAATTATCTGTTGGAATTGGATGAAAAATGGG
GCACAAAGTACCCTATGGTTATAAAATCTTGGCAGAATAATTGGGAAAACTTGTCTGGTTATTTTAAGTATTCTGGTCCAGTTAGGAGGATAATCTACAC
CACCAATCCCATAGAGGGGCTACATAGGCAAATTAGGAAATTCACTAAGACCAAAGGCTCATTTACCAGCATAAATGCCTTGTATAAGCAGGTATATTGT
GCTATAAAGAAGGTAGAGGAAAAGTCGACGATGCCTGTACATGATTGGGCATTAACTATCTCTCAACTTGATGTTTTCTTTCCTGGCAGATTGAAAATTG
AGTTGAACTAAAAATGCGGTTTGACACAGTTTATTTAACACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1239 bp412 aa731311+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSQKVVNRTTGLVDYKELETNILSSIREGRPLTGRDGALTPFIKKLLEVSLEGEIENHLSAESEENNRRNGRNAKTLRTSAGSFELLTPRDREGSFEPQI
VKKRQTNLHPELETKILSTFASGMGYRDIVSHVEEIYDHKISAAEISSITDKLLPVINEWRSRPLQSVYPIVFMDGMFFKVKEDGHCVSKCMYNILGIDQ
NGKKEVLGFYLAESEGANFWLGVLNDLKERGVEDILIACVDGLKSFPAAINSVFPNAEVQMCIVHQIRNSLKYVASKDAKSFLSDLKKVYQASSKEIAEN
YLLELDEKWGTKYPMVIKSWQNNWENLSGYFKYSGPVRRIIYTTNPIEGLHRQIRKFTKTKGSFTSINALYKQVYCAIKKVEEKSTMPVHDWALTISQLD
VFFPGRLKIELN

 

Blast result :
Comments
Putative boundaries identified by aligning multiple copies with flanking sequences and identification of inverted repeats.
ISWpi15 is 75% aa similar to ISSba9.
References
1] Cerveau N., and Cordaux R. (2010) Direct submission (manuscript in preparation)