ISWpi15
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Wolbachia pipientis | Wolbachia pipientis Wolbachia endosymbiont of Culex quinquefasciatus Pel |
DNA section
IS Length : 1345 bp
Ends
IR Length : 29
IRL : GGGAGTGTTAAATAAACTGTGTCAAACCGAAAAAAAAGTAATAAATTGAT
IRR : GGGAGTGTTAAATAAACTGTGTCAAACCGCATTTTTAGTTCAACTCAATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGCTGTGAA | TGCTATAG | CTGTTATTAC | 8 |
ATTTTACTCA | AAAAATAT | TGAAACAATC | 8 |
CTAGTATCCA | GAATAAAA | AAATATCAAA | 8 |
TATGTTCTCA | ATTTTGTC | ATGGTGAATA | 8 |
TCTCTCTCAA | TCTTTGGA | TTTTAATCCA | 8 |
TTAAAATTGT | CTTACCTG | TAGAGGAGAA | 8 |
ATCTGGAGCA | CTTGCTGT | TGGTACAAGT | 8 |
CAAAAGAGGC | AGAGGCAT | AGTTACTTTG | 8 |
CGGTAATGGT | AATCTTTG | CGGAGTGGAA | 8 |
GATACATTAA | AACGCTCT | TCAAATGTAT | 8 |
TATTGTTCTA | TTAAAACA | ATCAAGATCA | 8 |
AGTCTTCATA | g/cTATATAC | TTCTATAGGG | 10 |
ACAAGACATA | TTTTTCTGTT | 0 | |
CAAGTATTTC | CATATTCTCT | 0 | |
TTGCTTGTAT | AGATTATTTA | 0 | |
GTAATCTTTG | TCATACGAAT | 0 | |
GTGTGAAACA | TTTTTCTGTT | 0 |
DNA sequence
GGGAGTGTTAAATAAACTGTGTCAAACCGAAAAAAAAGTAATAAATTGATATAAAAAAATGGAGGTTTGACAATGAGTCAGAAAGTAGTAAACAGAACTA
CCGGTTTGGTAGATTATAAAGAATTAGAAACAAATATCCTGTCGTCTATACGAGAAGGAAGACCGTTGACAGGAAGAGATGGAGCATTAACACCGTTTAT
AAAAAAGTTGCTGGAGGTAAGCCTGGAAGGTGAAATAGAAAACCACTTGTCGGCCGAAAGCGAAGAGAATAATCGAAGAAATGGGAGGAATGCAAAGACT
TTACGTACAAGCGCAGGGTCATTTGAGCTTTTGACGCCAAGAGATAGGGAAGGAAGTTTCGAACCACAAATAGTCAAAAAAAGGCAAACAAACTTACATC
CAGAGCTTGAAACGAAGATTTTGAGCACATTTGCCAGTGGTATGGGCTATAGAGATATAGTGTCACATGTTGAGGAAATTTATGATCACAAAATATCGGC
GGCAGAGATATCAAGTATTACTGACAAATTGCTACCAGTAATCAACGAATGGCGTAGTCGCCCGCTGCAGTCTGTATATCCGATAGTTTTCATGGATGGC
ATGTTTTTTAAAGTCAAAGAGGACGGGCATTGCGTAAGTAAATGCATGTATAACATATTAGGCATAGATCAAAATGGCAAAAAAGAAGTATTAGGTTTTT
ATTTGGCTGAAAGTGAAGGAGCTAACTTCTGGTTGGGAGTGCTAAATGACCTCAAAGAAAGAGGAGTAGAAGATATCCTTATTGCCTGCGTTGATGGGCT
GAAAAGCTTTCCTGCAGCTATAAACAGTGTCTTTCCTAATGCGGAAGTGCAGATGTGTATAGTGCATCAGATACGCAACTCACTGAAGTATGTGGCCAGT
AAAGATGCGAAGAGTTTTTTGAGCGATTTAAAGAAGGTATATCAAGCTTCAAGCAAGGAAATTGCCGAGAATTATCTGTTGGAATTGGATGAAAAATGGG
GCACAAAGTACCCTATGGTTATAAAATCTTGGCAGAATAATTGGGAAAACTTGTCTGGTTATTTTAAGTATTCTGGTCCAGTTAGGAGGATAATCTACAC
CACCAATCCCATAGAGGGGCTACATAGGCAAATTAGGAAATTCACTAAGACCAAAGGCTCATTTACCAGCATAAATGCCTTGTATAAGCAGGTATATTGT
GCTATAAAGAAGGTAGAGGAAAAGTCGACGATGCCTGTACATGATTGGGCATTAACTATCTCTCAACTTGATGTTTTCTTTCCTGGCAGATTGAAAATTG
AGTTGAACTAAAAATGCGGTTTGACACAGTTTATTTAACACTCCC
CCGGTTTGGTAGATTATAAAGAATTAGAAACAAATATCCTGTCGTCTATACGAGAAGGAAGACCGTTGACAGGAAGAGATGGAGCATTAACACCGTTTAT
AAAAAAGTTGCTGGAGGTAAGCCTGGAAGGTGAAATAGAAAACCACTTGTCGGCCGAAAGCGAAGAGAATAATCGAAGAAATGGGAGGAATGCAAAGACT
TTACGTACAAGCGCAGGGTCATTTGAGCTTTTGACGCCAAGAGATAGGGAAGGAAGTTTCGAACCACAAATAGTCAAAAAAAGGCAAACAAACTTACATC
CAGAGCTTGAAACGAAGATTTTGAGCACATTTGCCAGTGGTATGGGCTATAGAGATATAGTGTCACATGTTGAGGAAATTTATGATCACAAAATATCGGC
GGCAGAGATATCAAGTATTACTGACAAATTGCTACCAGTAATCAACGAATGGCGTAGTCGCCCGCTGCAGTCTGTATATCCGATAGTTTTCATGGATGGC
ATGTTTTTTAAAGTCAAAGAGGACGGGCATTGCGTAAGTAAATGCATGTATAACATATTAGGCATAGATCAAAATGGCAAAAAAGAAGTATTAGGTTTTT
ATTTGGCTGAAAGTGAAGGAGCTAACTTCTGGTTGGGAGTGCTAAATGACCTCAAAGAAAGAGGAGTAGAAGATATCCTTATTGCCTGCGTTGATGGGCT
GAAAAGCTTTCCTGCAGCTATAAACAGTGTCTTTCCTAATGCGGAAGTGCAGATGTGTATAGTGCATCAGATACGCAACTCACTGAAGTATGTGGCCAGT
AAAGATGCGAAGAGTTTTTTGAGCGATTTAAAGAAGGTATATCAAGCTTCAAGCAAGGAAATTGCCGAGAATTATCTGTTGGAATTGGATGAAAAATGGG
GCACAAAGTACCCTATGGTTATAAAATCTTGGCAGAATAATTGGGAAAACTTGTCTGGTTATTTTAAGTATTCTGGTCCAGTTAGGAGGATAATCTACAC
CACCAATCCCATAGAGGGGCTACATAGGCAAATTAGGAAATTCACTAAGACCAAAGGCTCATTTACCAGCATAAATGCCTTGTATAAGCAGGTATATTGT
GCTATAAAGAAGGTAGAGGAAAAGTCGACGATGCCTGTACATGATTGGGCATTAACTATCTCTCAACTTGATGTTTTCTTTCCTGGCAGATTGAAAATTG
AGTTGAACTAAAAATGCGGTTTGACACAGTTTATTTAACACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1239 bp | 412 aa | 73 | 1311 | + | No |
Chemistry : DDE
ORF sequence :
MSQKVVNRTTGLVDYKELETNILSSIREGRPLTGRDGALTPFIKKLLEVSLEGEIENHLSAESEENNRRNGRNAKTLRTSAGSFELLTPRDREGSFEPQI
VKKRQTNLHPELETKILSTFASGMGYRDIVSHVEEIYDHKISAAEISSITDKLLPVINEWRSRPLQSVYPIVFMDGMFFKVKEDGHCVSKCMYNILGIDQ
NGKKEVLGFYLAESEGANFWLGVLNDLKERGVEDILIACVDGLKSFPAAINSVFPNAEVQMCIVHQIRNSLKYVASKDAKSFLSDLKKVYQASSKEIAEN
YLLELDEKWGTKYPMVIKSWQNNWENLSGYFKYSGPVRRIIYTTNPIEGLHRQIRKFTKTKGSFTSINALYKQVYCAIKKVEEKSTMPVHDWALTISQLD
VFFPGRLKIELN
VKKRQTNLHPELETKILSTFASGMGYRDIVSHVEEIYDHKISAAEISSITDKLLPVINEWRSRPLQSVYPIVFMDGMFFKVKEDGHCVSKCMYNILGIDQ
NGKKEVLGFYLAESEGANFWLGVLNDLKERGVEDILIACVDGLKSFPAAINSVFPNAEVQMCIVHQIRNSLKYVASKDAKSFLSDLKKVYQASSKEIAEN
YLLELDEKWGTKYPMVIKSWQNNWENLSGYFKYSGPVRRIIYTTNPIEGLHRQIRKFTKTKGSFTSINALYKQVYCAIKKVEEKSTMPVHDWALTISQLD
VFFPGRLKIELN
Blast result :
Comments
Putative boundaries identified by aligning multiple copies with flanking sequences and identification of inverted repeats.
ISWpi15 is 75% aa similar to ISSba9.
ISWpi15 is 75% aa similar to ISSba9.
References
1] Cerveau N., and Cordaux R. (2010) Direct submission (manuscript in preparation)