ISVa5
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio anguillarum | Listonella anguillarum 775 plasmid pJM1 Vibrio anguillarum NB10 Listonella anguillarum plasmid pEIB1 |
DNA section
IS Length : 2381 bp
Ends
IR Length : 15/19
IRL : GTAAGCGCGCCATAAACCCCGCATTCTAATCTTTCAGCGCGAAGAATAAG
IRR : GTATCCGCCCCATGAACCCACGGGCCGACTTGTCAGTGTTTGAAGTTCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACCTTTAAT | AGAGAATGCG | 0 | |
ATGTTGTATC | CTTTGAAATT | 0 |
DNA sequence
GTAAGCGCGCCATAAACCCCGCATTCTAATCTTTCAGCGCGAAGAATAAGATCAACTCTCCAACCCAAAGGAGAGTTGAAATGGCAAAACGACGCACCAA
CCTAGAATGGCAATCACTGTTTGAACAATATGAAAGCAGCAGTGTTACCCAACGCGCTTTTTGCGAAGAGCATGGACTGAGTTTATCCACGTTCTTCGCC
AAGCGGCGTCAACTCCAAACAGTAAACCAATCGGAATTTGTCGGATTTGTTAAAGCCGAAATCGTCGAAAAGACAACCAAGTATCAGGCCCAGATAGCTA
CGGCTAACATGACACTTCTCATCAATGATGTGGAGCTGAGCATTCCTCAAGGTACGCCAGCGACCTATCTTGCTGAACTCATTGGAGCGTTGTCATGAAA
GGTATGCTCAGCGCTCCAGACATTTACCTTTATCGTGAAAGCGTCGATTTTAGAAAGTCCATCAACGGTCTTGCAGCGATTATCGAAAATGATACGGACT
TACCTCTTGGCAGCGGTGCGCTGTTCCTGTTTACCAATAAACAGCGCGATAAGATTAAGGTACTGTACTGGGATAAAACAGGCTTCGCCCTCTGGTATAA
ACGCCTTGAAAAAGCCAAGTATAAGTGGCCTTCAAAAGAGAAAAATCAGGTGTTTACCCTCACTCAATTTGAGCTTGATAGACTGCTTTCTGGCTTCACA
ATTATCGGCCATGAACCCGTAAAAATAAACGATTTTACAATGAGCTAATCGAGAATAAAGCCTTATATACCAAGCGTTAACGGCACGGTTTTAGTATAAT
CAATGCCATGGAAAAGACGCCAAATATCAACCCAGAAAGCCAAGATATTGCCGAGCTACAAGCGATGGTGAAAGCCCTGATGCTCTCGCAAGAGCAGAAG
GAATCGCAATGGCAACAAGAGCGACAATCGCTGCTTGAACAACTCAAACTCGCCTTCGACCGCCAGTTCGCTAAACGCTCGGAGGCGTTAAAGCCTTACG
ATGAATCACAAGGTGACCTCTTCAACGAAGCGGAATGTGAAGCCGTTAAGGAAGAAGAAGTTGAGGTGACAACCACGATCACAACGAAAAAGCGTGGTAA
ACGTAAACCTCTGCCTAAGACCTTACCTCGTGAGGTTATCGAACTCGATTTAGACGACCATGAAAAGCAGTGTTCTTGTTGTAATCATGGCCTGCATAAA
ATCGGTGAAGACCGCAGCGAGAAGCTAGAGTTCACGCCTGCGGTACTCAAGGTGTTGGAATATGTTCGCCCTAAGTACGCTTGCCGCCAGTGCGAGAAAA
CAGGCGACAGCAGCCATATCGTTCAGAAGCCATCCCCTCAGAGTCTCATCCCTAAAAGCTTCGCCACAGAAAGCTTGCTGGCCAACATCATTCTTGGCAA
ATACCAGTATGCGATGCCACTTTATCGCCAAGAATCGCTGTTTACCCAGTCGGGTATCGAGTTATCACGCACCACCATGGCAAGGTGGGTTATCCAAGTC
AGCGAGAAGTTCGCCCCGCTGTATGCCGCCTTGAAGAAGTACCTACTTCAGCAAGTGGTGGTTCAGGCGGATGAAACGCCGCTCAATGTGCTCAAGGAAG
AGAAGAAGTGTTATATGTGGCTCTACTGCTCGGGCGCTGACTCGCCCGAAGCCGCACTGCCTAATGTGAAAAATATCGCCTTGTACGACTATCAAAACAG
TCGCGCGAGGGCGTGCCCTATTGCCTTTTTAGGTGACTACAACGGTTATCTACAAACCGATGGCTACGCTGCTTATGATGGACTTCATCAAGTCACCAAT
GTGGGGTGCTTAGCGCATGCTCGTCGCAAGTTCATGGACGCGAAGAAGCTTCAAGGGAAAGGTAAGTCGGGCAAGGCCGATAAAGCGCTGGCTAAAATCC
AAAAACTCTACGGGATAGAATCGCGCTTAAAAGGTGCGCCTGCCGAAGAGCGAAAAGCAGAGCGTCAAGCACTTGCCAAGCCGATACTGGATGAGCTTTA
CCAATGGATGACAACCCAGAAGGTGATAGGCTCTAGCCCACTGGGCAAAGCGATAAAATACACGCTCGGGCAGTGGTCAAAGCTCACTCGTTATATCGAC
GATGGCCACTTATCTATCGATAATAATCGCGCTGAACGCGCAATTAAACCGCTGGTTATTGGCAGGAAGAACTGGCTATTCTCTAACACACCAAACGGTG
CTGATGCGAGCGCGATGCTTTACAGCATCATCGAGACCGCGAAAGCCAACGGTCTTATCCTCTATGACTACCTAGTCAAGTGCATGAAAGAGTTGGCGAA
AGCAGAGCCTGATATCGACGCACTCCTACCTTGGAACTTCAAACACTGACAAGTCGGCCCGTGGGTTCATGGGGCGGATAC
CCTAGAATGGCAATCACTGTTTGAACAATATGAAAGCAGCAGTGTTACCCAACGCGCTTTTTGCGAAGAGCATGGACTGAGTTTATCCACGTTCTTCGCC
AAGCGGCGTCAACTCCAAACAGTAAACCAATCGGAATTTGTCGGATTTGTTAAAGCCGAAATCGTCGAAAAGACAACCAAGTATCAGGCCCAGATAGCTA
CGGCTAACATGACACTTCTCATCAATGATGTGGAGCTGAGCATTCCTCAAGGTACGCCAGCGACCTATCTTGCTGAACTCATTGGAGCGTTGTCATGAAA
GGTATGCTCAGCGCTCCAGACATTTACCTTTATCGTGAAAGCGTCGATTTTAGAAAGTCCATCAACGGTCTTGCAGCGATTATCGAAAATGATACGGACT
TACCTCTTGGCAGCGGTGCGCTGTTCCTGTTTACCAATAAACAGCGCGATAAGATTAAGGTACTGTACTGGGATAAAACAGGCTTCGCCCTCTGGTATAA
ACGCCTTGAAAAAGCCAAGTATAAGTGGCCTTCAAAAGAGAAAAATCAGGTGTTTACCCTCACTCAATTTGAGCTTGATAGACTGCTTTCTGGCTTCACA
ATTATCGGCCATGAACCCGTAAAAATAAACGATTTTACAATGAGCTAATCGAGAATAAAGCCTTATATACCAAGCGTTAACGGCACGGTTTTAGTATAAT
CAATGCCATGGAAAAGACGCCAAATATCAACCCAGAAAGCCAAGATATTGCCGAGCTACAAGCGATGGTGAAAGCCCTGATGCTCTCGCAAGAGCAGAAG
GAATCGCAATGGCAACAAGAGCGACAATCGCTGCTTGAACAACTCAAACTCGCCTTCGACCGCCAGTTCGCTAAACGCTCGGAGGCGTTAAAGCCTTACG
ATGAATCACAAGGTGACCTCTTCAACGAAGCGGAATGTGAAGCCGTTAAGGAAGAAGAAGTTGAGGTGACAACCACGATCACAACGAAAAAGCGTGGTAA
ACGTAAACCTCTGCCTAAGACCTTACCTCGTGAGGTTATCGAACTCGATTTAGACGACCATGAAAAGCAGTGTTCTTGTTGTAATCATGGCCTGCATAAA
ATCGGTGAAGACCGCAGCGAGAAGCTAGAGTTCACGCCTGCGGTACTCAAGGTGTTGGAATATGTTCGCCCTAAGTACGCTTGCCGCCAGTGCGAGAAAA
CAGGCGACAGCAGCCATATCGTTCAGAAGCCATCCCCTCAGAGTCTCATCCCTAAAAGCTTCGCCACAGAAAGCTTGCTGGCCAACATCATTCTTGGCAA
ATACCAGTATGCGATGCCACTTTATCGCCAAGAATCGCTGTTTACCCAGTCGGGTATCGAGTTATCACGCACCACCATGGCAAGGTGGGTTATCCAAGTC
AGCGAGAAGTTCGCCCCGCTGTATGCCGCCTTGAAGAAGTACCTACTTCAGCAAGTGGTGGTTCAGGCGGATGAAACGCCGCTCAATGTGCTCAAGGAAG
AGAAGAAGTGTTATATGTGGCTCTACTGCTCGGGCGCTGACTCGCCCGAAGCCGCACTGCCTAATGTGAAAAATATCGCCTTGTACGACTATCAAAACAG
TCGCGCGAGGGCGTGCCCTATTGCCTTTTTAGGTGACTACAACGGTTATCTACAAACCGATGGCTACGCTGCTTATGATGGACTTCATCAAGTCACCAAT
GTGGGGTGCTTAGCGCATGCTCGTCGCAAGTTCATGGACGCGAAGAAGCTTCAAGGGAAAGGTAAGTCGGGCAAGGCCGATAAAGCGCTGGCTAAAATCC
AAAAACTCTACGGGATAGAATCGCGCTTAAAAGGTGCGCCTGCCGAAGAGCGAAAAGCAGAGCGTCAAGCACTTGCCAAGCCGATACTGGATGAGCTTTA
CCAATGGATGACAACCCAGAAGGTGATAGGCTCTAGCCCACTGGGCAAAGCGATAAAATACACGCTCGGGCAGTGGTCAAAGCTCACTCGTTATATCGAC
GATGGCCACTTATCTATCGATAATAATCGCGCTGAACGCGCAATTAAACCGCTGGTTATTGGCAGGAAGAACTGGCTATTCTCTAACACACCAAACGGTG
CTGATGCGAGCGCGATGCTTTACAGCATCATCGAGACCGCGAAAGCCAACGGTCTTATCCTCTATGACTACCTAGTCAAGTGCATGAAAGAGTTGGCGAA
AGCAGAGCCTGATATCGACGCACTCCTACCTTGGAACTTCAAACACTGACAAGTCGGCCCGTGGGTTCATGGGGCGGATAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
318 bp | 105 aa | 81 | 398 | + | No |
AG : IS66 TnpA
ORF sequence :
MAKRRTNLEWQSLFEQYESSSVTQRAFCEEHGLSLSTFFAKRRQLQTVNQSEFVGFVKAEIVEKTTKYQAQIATANMTLLINDVELSIPQGTPATYLAEL
IGALS
IGALS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
354 bp | 117 aa | 395 | 748 | + | No |
AG : IS66 TnpB
ORF sequence :
MKGMLSAPDIYLYRESVDFRKSINGLAAIIENDTDLPLGSGALFLFTNKQRDKIKVLYWDKTGFALWYKRLEKAKYKWPSKEKNQVFTLTQFELDRLLSG
FTIIGHEPVKINDFTMS
FTIIGHEPVKINDFTMS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1542 bp | 513 aa | 808 | 2349 | + | No |
Chemistry : DDE
ORF sequence :
MEKTPNINPESQDIAELQAMVKALMLSQEQKESQWQQERQSLLEQLKLAFDRQFAKRSEALKPYDESQGDLFNEAECEAVKEEEVEVTTTITTKKRGKRK
PLPKTLPREVIELDLDDHEKQCSCCNHGLHKIGEDRSEKLEFTPAVLKVLEYVRPKYACRQCEKTGDSSHIVQKPSPQSLIPKSFATESLLANIILGKYQ
YAMPLYRQESLFTQSGIELSRTTMARWVIQVSEKFAPLYAALKKYLLQQVVVQADETPLNVLKEEKKCYMWLYCSGADSPEAALPNVKNIALYDYQNSRA
RACPIAFLGDYNGYLQTDGYAAYDGLHQVTNVGCLAHARRKFMDAKKLQGKGKSGKADKALAKIQKLYGIESRLKGAPAEERKAERQALAKPILDELYQW
MTTQKVIGSSPLGKAIKYTLGQWSKLTRYIDDGHLSIDNNRAERAIKPLVIGRKNWLFSNTPNGADASAMLYSIIETAKANGLILYDYLVKCMKELAKAE
PDIDALLPWNFKH
PLPKTLPREVIELDLDDHEKQCSCCNHGLHKIGEDRSEKLEFTPAVLKVLEYVRPKYACRQCEKTGDSSHIVQKPSPQSLIPKSFATESLLANIILGKYQ
YAMPLYRQESLFTQSGIELSRTTMARWVIQVSEKFAPLYAALKKYLLQQVVVQADETPLNVLKEEKKCYMWLYCSGADSPEAALPNVKNIALYDYQNSRA
RACPIAFLGDYNGYLQTDGYAAYDGLHQVTNVGCLAHARRKFMDAKKLQGKGKSGKADKALAKIQKLYGIESRLKGAPAEERKAERQALAKPILDELYQW
MTTQKVIGSSPLGKAIKYTLGQWSKLTRYIDDGHLSIDNNRAERAIKPLVIGRKNWLFSNTPNGADASAMLYSIIETAKANGLILYDYLVKCMKELAKAE
PDIDALLPWNFKH
Blast result :
Comments
ISVa5 is 54%(orfA) aa similar to ISPa30, 74%(orfB) and 67%(orfC) to ISShes9.
References
1] K. Olav Holm and Erik Hjerde (2010) Direct submission