ISVa4
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio anguillarum | Vibrio anguillarum NB10 |
DNA section
IS Length : 1254 bp
Ends
IR Length : 29/36
IRL : TGTAATGGTACGGTTAACTTGGATGGTATTTAAGCCTTATAATTATCACT
IRR : TGTAATGATCCAGCTTTTTTGGAGAGTTTTTAAGCCACTTTTTGCATTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGTAATGGTACGGTTAACTTGGATGGTATTTAAGCCTTATAATTATCACTACTTATAAGGAATCTGATATGTCACCAAAACTACGAGTGCAAATCACCCC
TCAACAGAAGCTTGAATATGCCAAGATGATGGTTGAAGATGGTTACACCAATCAACAGATACAAGATATCAGTGGTGCTTGTTCATCAGCTGTAGTGCGC
TGGAAGCGCCAATATAAAGAAGAAATGTTAGGCATGACACCCACTAATAGAGTGGCATTAACACCAGAGCAGCAACGTATACAAGAGTTGGAAAAACAAC
TTGCTAGAGCCAAAAGAGACATCGATATATTAAAAAAAGCCAGCGCCTTGTTCATACAAAGTCAGTAAAGCCTGACTTTGTCAGAAAATTGAAGAAGGCG
CACCCAAAATTCACTATTTCTGAGCTTTGCCGAGTGCTTGGCGTCGCCAGCAGCTGTTTTTACTATACGAGAGTTGTATGCTCTGATGAGACCACCCTGC
ACGATAGAATTTACCGTATTGCAGAGGATTCTGATTTTACTTATGGCAAGCGCCGAATACACCGAGAACTGGTAAAAAGTGATGTAAAGATAGGTTTAGC
AAAAGTATCGAGACTGATGAAAGCCATTGAAATACCAGTTAAGTATCCGAAAAAAAGACATCGTTACAACGAGGTTGGTGAAGAAAGTATCTATGCACCT
AATATATTGAAAAGGCAGTTTACCCCCGAAACTCACAATACTCATTGGGTGACGGATGTGACCTATATTCGTTCCCATCAAGGTTGGAGTTACTTGGCAT
GCGTATTAGATCTAGCAACGAAAGAGGTGGTCGGATATTCGTTGTCACGCTCCCCTGATACCAATTTAACTTTGGCCGCATTAGACAATGCCATCCAAAA
ACGACGAGCCGACACAACTCAATTACTGTTGCACTCAGATCAAGGATGTCACTTTAGCTCACGAGCTTATAGGCATAGATTACAAGTGCTAAATATTACA
CAAAGCATGAGTAAACGAGGGTGTTGTTGGGATAATGCTGTGATGGAACGTTTTTTTCGTTCTTTAAAATCAGAGCGTTTAAACGAATTAAGCTTTATCA
ATCATCAGTCAATCGTAATGGAGGTAGAGAGCTACATTCGTTTTTACAACTATAAACGAAGTCATAGTGGGATTGATTATTTAACGCCAAATGAAAAATA
CCAACAAATGCAAAAAGTGGCTTAAAAACTCTCCAAAAAAGCTGGATCATTACA
TCAACAGAAGCTTGAATATGCCAAGATGATGGTTGAAGATGGTTACACCAATCAACAGATACAAGATATCAGTGGTGCTTGTTCATCAGCTGTAGTGCGC
TGGAAGCGCCAATATAAAGAAGAAATGTTAGGCATGACACCCACTAATAGAGTGGCATTAACACCAGAGCAGCAACGTATACAAGAGTTGGAAAAACAAC
TTGCTAGAGCCAAAAGAGACATCGATATATTAAAAAAAGCCAGCGCCTTGTTCATACAAAGTCAGTAAAGCCTGACTTTGTCAGAAAATTGAAGAAGGCG
CACCCAAAATTCACTATTTCTGAGCTTTGCCGAGTGCTTGGCGTCGCCAGCAGCTGTTTTTACTATACGAGAGTTGTATGCTCTGATGAGACCACCCTGC
ACGATAGAATTTACCGTATTGCAGAGGATTCTGATTTTACTTATGGCAAGCGCCGAATACACCGAGAACTGGTAAAAAGTGATGTAAAGATAGGTTTAGC
AAAAGTATCGAGACTGATGAAAGCCATTGAAATACCAGTTAAGTATCCGAAAAAAAGACATCGTTACAACGAGGTTGGTGAAGAAAGTATCTATGCACCT
AATATATTGAAAAGGCAGTTTACCCCCGAAACTCACAATACTCATTGGGTGACGGATGTGACCTATATTCGTTCCCATCAAGGTTGGAGTTACTTGGCAT
GCGTATTAGATCTAGCAACGAAAGAGGTGGTCGGATATTCGTTGTCACGCTCCCCTGATACCAATTTAACTTTGGCCGCATTAGACAATGCCATCCAAAA
ACGACGAGCCGACACAACTCAATTACTGTTGCACTCAGATCAAGGATGTCACTTTAGCTCACGAGCTTATAGGCATAGATTACAAGTGCTAAATATTACA
CAAAGCATGAGTAAACGAGGGTGTTGTTGGGATAATGCTGTGATGGAACGTTTTTTTCGTTCTTTAAAATCAGAGCGTTTAAACGAATTAAGCTTTATCA
ATCATCAGTCAATCGTAATGGAGGTAGAGAGCTACATTCGTTTTTACAACTATAAACGAAGTCATAGTGGGATTGATTATTTAACGCCAAATGAAAAATA
CCAACAAATGCAAAAAGTGGCTTAAAAACTCTCCAAAAAAGCTGGATCATTACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
300 bp | 99 aa | 69 | 368 | + | No |
Description : First part of the transposase
ORF sequence :
MSPKLRVQITPQQKLEYAKMMVEDGYTNQQIQDISGACSSAVVRWKRQYKEEMLGMTPTNRVALTPEQQRIQELEKQLARAKRDIDILKKASALFIQSQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
918 bp | 305 aa | 308 | 1225 | + | No |
Description : Second part of the transposase
ORF sequence :
SQKRHRYIKKSQRLVHTKSVKPDFVRKLKKAHPKFTISELCRVLGVASSCFYYTRVVCSDETTLHDRIYRIAEDSDFTYGKRRIHRELVKSDVKIGLAKV
SRLMKAIEIPVKYPKKRHRYNEVGEESIYAPNILKRQFTPETHNTHWVTDVTYIRSHQGWSYLACVLDLATKEVVGYSLSRSPDTNLTLAALDNAIQKRR
ADTTQLLLHSDQGCHFSSRAYRHRLQVLNITQSMSKRGCCWDNAVMERFFRSLKSERLNELSFINHQSIVMEVESYIRFYNYKRSHSGIDYLTPNEKYQQ
MQKVA
SRLMKAIEIPVKYPKKRHRYNEVGEESIYAPNILKRQFTPETHNTHWVTDVTYIRSHQGWSYLACVLDLATKEVVGYSLSRSPDTNLTLAALDNAIQKRR
ADTTQLLLHSDQGCHFSSRAYRHRLQVLNITQSMSKRGCCWDNAVMERFFRSLKSERLNELSFINHQSIVMEVESYIRFYNYKRSHSGIDYLTPNEKYQQ
MQKVA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1157 bp | 385 aa | 69 | 1225 | + | Yes |
Chemistry : DDE
ORF sequence :
MSPKLRVQITPQQKLEYAKMMVEDGYTNQQIQDISGACSSAVVRWKRQYKEEMLGMTPTNRVALTPEQQRIQELEKQLARAKRDIDILKKSQRLVHTKSV
KPDFVRKLKKAHPKFTISELCRVLGVASSCFYYTRVVCSDETTLHDRIYRIAEDSDFTYGKRRIHRELVKSDVKIGLAKVSRLMKAIEIPVKYPKKRHRY
NEVGEESIYAPNILKRQFTPETHNTHWVTDVTYIRSHQGWSYLACVLDLATKEVVGYSLSRSPDTNLTLAALDNAIQKRRADTTQLLLHSDQGCHFSSRA
YRHRLQVLNITQSMSKRGCCWDNAVMERFFRSLKSERLNELSFINHQSIVMEVESYIRFYNYKRSHSGIDYLTPNEKYQQMQKVA
KPDFVRKLKKAHPKFTISELCRVLGVASSCFYYTRVVCSDETTLHDRIYRIAEDSDFTYGKRRIHRELVKSDVKIGLAKVSRLMKAIEIPVKYPKKRHRY
NEVGEESIYAPNILKRQFTPETHNTHWVTDVTYIRSHQGWSYLACVLDLATKEVVGYSLSRSPDTNLTLAALDNAIQKRRADTTQLLLHSDQGCHFSSRA
YRHRLQVLNITQSMSKRGCCWDNAVMERFFRSLKSERLNELSFINHQSIVMEVESYIRFYNYKRSHSGIDYLTPNEKYQQMQKVA
Blast result :
Comments
ISVa4 is 73% aa similar to ISSde8.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
References
1] K. Olav Holm (2010) Direct submission