ISGeob7
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_013757 | ND | Geodermatophilus obscurus | Geodermatophilus obscurus DSM 43160 |
DNA section
IS Length : 883 bp
Ends
IR Length : 16/20
IRL : CAAGTCGTTTCACTATGACCTCGGCGTGGCTGCCGTAGGACGTGGCCAGT
IRR : CAACTCGTTTCAGAACGACCGAAGCCGGCGGTAGCAGATCAAGGCGCAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACGAGGTCG | TAA | GCGTGACCTT | 3 |
CGCGCCCCAC | TAA | TGCGCCACCT | 3 |
DNA sequence
CAAGTCGTTTCACTATGACCTCGGCGTGGCTGCCGTAGGACGTGGCCAGTCTGAGCAGGCTGGCCTGGGTGATCGAGGAGCTTGTCCCCGACGGGCTGTG
GCAGCGGATCGCTTCGCTGCTGCCACCACCGAAGCCCCGCCGCCACCGCTATCCGGGGCGACGGCCGATCGATGACCGCGCCGCACTCGCCGGGATCATG
TTCGTGCTCAAGACCGGCATCACCTGGAACCAACTGCCCACGTCGCTGGTCGGCTGCTCCGGGGTGACCTGCTGGCGGCGGCTGCGCGACTGGACCGAAG
CCGGCGTGTGGCCGGCGCTGCACGAGCTGCTGCTCGCCGAGCTGCGCGCGGCCGGCGAGTTGGACCTGGACCGCTGCGCGGTCGACGGCTCCCACATCCG
GGCACTCAAAGGGGGGACCAGGTCGGCCCCTCACCGGTCGACCGCGGACGCCCCGGCTCCAAGCACCACCTGATCTGCGACGCCGACGGCATCCCGCTGG
CCGTCACGCTGACCGGCGGCAACCGCAACGACGTCACCCAGCTCATCCCGCTGGTCGACGCGGTGCCGCCGATTAGGGGTCGGCGCGGTCGGCCGCGTCG
TCGACCGCGCGAGCTGTTCGCCGACCGCGGCTACGACCACGACATCTACCGTCGCCGGCTGCGCGCTCGCGGCATCACTCCGCGGATCGCCCGCCGCGGC
GTCGCCCACGGCTCGGGTCTGGGCAAGCAGCGCTGGGTGGTCGAACGAAGCTTCGCCTGGCTGCACGCGTTCAAGCGGCTACGCACCCGGTATGAACGCC
GCGCCGACATCCACCTCGGGCTGATGCAACTGGCCTGCGCCTTGATCTGCTACCGCCGGCTTCGGTCGTTCTGAAACGAGTTG
GCAGCGGATCGCTTCGCTGCTGCCACCACCGAAGCCCCGCCGCCACCGCTATCCGGGGCGACGGCCGATCGATGACCGCGCCGCACTCGCCGGGATCATG
TTCGTGCTCAAGACCGGCATCACCTGGAACCAACTGCCCACGTCGCTGGTCGGCTGCTCCGGGGTGACCTGCTGGCGGCGGCTGCGCGACTGGACCGAAG
CCGGCGTGTGGCCGGCGCTGCACGAGCTGCTGCTCGCCGAGCTGCGCGCGGCCGGCGAGTTGGACCTGGACCGCTGCGCGGTCGACGGCTCCCACATCCG
GGCACTCAAAGGGGGGACCAGGTCGGCCCCTCACCGGTCGACCGCGGACGCCCCGGCTCCAAGCACCACCTGATCTGCGACGCCGACGGCATCCCGCTGG
CCGTCACGCTGACCGGCGGCAACCGCAACGACGTCACCCAGCTCATCCCGCTGGTCGACGCGGTGCCGCCGATTAGGGGTCGGCGCGGTCGGCCGCGTCG
TCGACCGCGCGAGCTGTTCGCCGACCGCGGCTACGACCACGACATCTACCGTCGCCGGCTGCGCGCTCGCGGCATCACTCCGCGGATCGCCCGCCGCGGC
GTCGCCCACGGCTCGGGTCTGGGCAAGCAGCGCTGGGTGGTCGAACGAAGCTTCGCCTGGCTGCACGCGTTCAAGCGGCTACGCACCCGGTATGAACGCC
GCGCCGACATCCACCTCGGGCTGATGCAACTGGCCTGCGCCTTGATCTGCTACCGCCGGCTTCGGTCGTTCTGAAACGAGTTG
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
405 bp | 134 aa | 69 | 473 | + | No |
Description : First part of the transposase
ORF sequence :
MIEELVPDGLWQRIASLLPPPKPRRHRYPGRRPIDDRAALAGIMFVLKTGITWNQLPTSLVGCSGVTCWRRLRDWTEAGVWPALHELLLAELRAAGELDL
DRCAVDGSHIRALKGGTRSAPHRSTADAPAPSTT
DRCAVDGSHIRALKGGTRSAPHRSTADAPAPSTT
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
516 bp | 171 aa | 359 | 874 | + | No |
Description : Second part of the transposase
ORF sequence :
VGPGPLRGRRLPHPGTQRGDQVGPSPVDRGRPGSKHHLICDADGIPLAVTLTGGNRNDVTQLIPLVDAVPPIRGRRGRPRRRPRELFADRGYDHDIYRRR
LRARGITPRIARRGVAHGSGLGKQRWVVERSFAWLHAFKRLRTRYERRADIHLGLMQLACALICYRRLRSF
LRARGITPRIARRGVAHGSGLGKQRWVVERSFAWLHAFKRLRTRYERRADIHLGLMQLACALICYRRLRSF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
806 bp | 268 aa | 69 | 874 | + | Yes |
Chemistry : DDE
ORF sequence :
MIEELVPDGLWQRIASLLPPPKPRRHRYPGRRPIDDRAALAGIMFVLKTGITWNQLPTSLVGCSGVTCWRRLRDWTEAGVWPALHELLLAELRAAGELDL
DRCAVDGSHIRALKRGDQVGPSPVDRGRPGSKHHLICDADGIPLAVTLTGGNRNDVTQLIPLVDAVPPIRGRRGRPRRRPRELFADRGYDHDIYRRRLRA
RGITPRIARRGVAHGSGLGKQRWVVERSFAWLHAFKRLRTRYERRADIHLGLMQLACALICYRRLRSF
DRCAVDGSHIRALKRGDQVGPSPVDRGRPGSKHHLICDADGIPLAVTLTGGNRNDVTQLIPLVDAVPPIRGRRGRPRRRPRELFADRGYDHDIYRRRLRA
RGITPRIARRGVAHGSGLGKQRWVVERSFAWLHAFKRLRTRYERRADIHLGLMQLACALICYRRLRSF
Blast result :
Comments
ISGeob7 is 72% aa similar to ISBugl2. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] ISfinder annotation (2010)
2) Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.
2) Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.