ISStro2
- Family IS5
- Group ISL2
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013595 | ND | Streptosporangium roseum | Streptosporangium roseum DSM 43021 |
DNA section
IS Length : 912 bp
Ends
IR Length : 13/18
IRL : GAGCTCTTTCCATCGTGAAGGCACTGGTCAGGATGGGTCTGCGGAAAGCA
IRR : GAACCATTTCATCCTGAGTAGCGGCCTTCTTCCACGAGCTGCAGCACAAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGGCATGAGT | TTATTGTGTC | 0 |
DNA sequence
GAGCTCTTTCCATCGTGAAGGCACTGGTCAGGATGGGTCTGCGGAAAGCAGTGGTGGATGAGAGGAGACTCCCGATAAGACAGCAGTCGACCAAGATCCG
ATGCCCCAACCGGGAGCCTCGTTGCTGTCTTACCGTGCCTCGATTCCACTGTCCAACCACACCCTGATTCGCCTGGCCGAACTCATCCGCACCCGGCACG
CCGAACGTCGCTCCCGGTGGCGGAAGTTAGATTCGGCGCAGCAGGCGCTACTGGTCCTGGCCCATTTACGCAATGGCGACACCTACGCCCGCCTGGCCGC
CGGTTTCGCCGTAGGGACCACCACGGCCTGGCGCTATGTTCGCGAAGCCGTCGATCTCCTGGCCGCCCTGGCCGACGACGTGCACGCCGCCGTCGAGCGC
GCATCCCGGCTGGCCTACACCATCCTGGACGGCACTCTCATTCCGATTGACCGCCTCGCCGATGAGCGGCCGTATTACAGCGGCAAACACAAGCGGCATG
GAATGAACGTGCAACTGCTGGCCGACCCCATGGGCCGATTGGTGTGGGCCTCGCCCGCGTTGCCGGGCGCCGCGCACGACGTGAGCGCCGCCCGGAAGGT
CGGCCTAATCGACGCCTTGACCAGCGCCGGCGTGAAGACCTTTGCGGACAAGGGTTATCAAGGCGCGGGCGCCATGATTCGGACGCCGTTCAAGCGACAT
CGCCATCGGCCCTGGTTGTCGCGCGGGCAGCGGGACGTCAACCGCGCCCACGCCCGTATCCGGGCCATCGGTGAGCGTGCCGTCGCGACCTTGAAGGGCT
GGAAGGTGCTTACTAGGCTGCGCTGTTGCCCGCATCGAGCGACAGCGTTCGTGCAGGCGATCTTTGTGCTGCAGCTCGTGGAAGAAGGCCGCTACTCAGG
ATGAAATGGTTC
ATGCCCCAACCGGGAGCCTCGTTGCTGTCTTACCGTGCCTCGATTCCACTGTCCAACCACACCCTGATTCGCCTGGCCGAACTCATCCGCACCCGGCACG
CCGAACGTCGCTCCCGGTGGCGGAAGTTAGATTCGGCGCAGCAGGCGCTACTGGTCCTGGCCCATTTACGCAATGGCGACACCTACGCCCGCCTGGCCGC
CGGTTTCGCCGTAGGGACCACCACGGCCTGGCGCTATGTTCGCGAAGCCGTCGATCTCCTGGCCGCCCTGGCCGACGACGTGCACGCCGCCGTCGAGCGC
GCATCCCGGCTGGCCTACACCATCCTGGACGGCACTCTCATTCCGATTGACCGCCTCGCCGATGAGCGGCCGTATTACAGCGGCAAACACAAGCGGCATG
GAATGAACGTGCAACTGCTGGCCGACCCCATGGGCCGATTGGTGTGGGCCTCGCCCGCGTTGCCGGGCGCCGCGCACGACGTGAGCGCCGCCCGGAAGGT
CGGCCTAATCGACGCCTTGACCAGCGCCGGCGTGAAGACCTTTGCGGACAAGGGTTATCAAGGCGCGGGCGCCATGATTCGGACGCCGTTCAAGCGACAT
CGCCATCGGCCCTGGTTGTCGCGCGGGCAGCGGGACGTCAACCGCGCCCACGCCCGTATCCGGGCCATCGGTGAGCGTGCCGTCGCGACCTTGAAGGGCT
GGAAGGTGCTTACTAGGCTGCGCTGTTGCCCGCATCGAGCGACAGCGTTCGTGCAGGCGATCTTTGTGCTGCAGCTCGTGGAAGAAGGCCGCTACTCAGG
ATGAAATGGTTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 783 bp | 260 aa | 122 | 904 | + | No |
Chemistry : DDE
ORF sequence :
MLSYRASIPLSNHTLIRLAELIRTRHAERRSRWRKLDSAQQALLVLAHLRNGDTYARLAAGFAVGTTTAWRYVREAVDLLAALADDVHAAVERASRLAYT
ILDGTLIPIDRLADERPYYSGKHKRHGMNVQLLADPMGRLVWASPALPGAAHDVSAARKVGLIDALTSAGVKTFADKGYQGAGAMIRTPFKRHRHRPWLS
RGQRDVNRAHARIRAIGERAVATLKGWKVLTRLRCCPHRATAFVQAIFVLQLVEEGRYSG
ILDGTLIPIDRLADERPYYSGKHKRHGMNVQLLADPMGRLVWASPALPGAAHDVSAARKVGLIDALTSAGVKTFADKGYQGAGAMIRTPFKRHRHRPWLS
RGQRDVNRAHARIRAIGERAVATLKGWKVLTRLRCCPHRATAFVQAIFVLQLVEEGRYSG
Blast result :
Comments
ISStro2 is 80% aa similar to ISSar1.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Sims,D., Meinche,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Sims,D., Meinche,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission GenBank.