ISCgl6
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003450 | ND | Corynebacterium glutamicum | Corynebacterium glutamicum ATCC 13032 |
DNA section
IS Length : 964 bp
Ends
IR Length : 16
IRL : GAGATTGCGCGGATAGGTGGATAAAAGGGAAAACATAGGGGTCATGAAAT
IRR : GAGATTGCGCGGATAGATTAAGGTCTGTGGCCCGGTCGGGTGTCCCAGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGATTAAATT | TAA | GGAGAAAGTT | 3 |
DNA sequence
GAGATTGCGCGGATAGGTGGATAAAAGGGAAAACATAGGGGTCATGAAATAGAACAAGCACGAGGCCTGGTAAATACGAATTCGACCAAGAAAACGTAAA
CACCCCAGGAGTACTCGTGCCTGCCCTTCCATCATCTATCATCGACCCCCTCTGGCGCCAGTTCTCCGCCTTAATCCCACCGGTTATCATCACCCACCCA
CTAGGGTGCCACCGTGCACGCATTGCTGACCGGATCATCGTCGACAAACTCATCGCAGTGCTTGTCCTCGGTGTCTCCTATATCAAGATTTCCGATTCCA
CCTGCTCAGCCACCACGATACGCACCCGCCGAGACGAGTGGATCACTGCCGGGATTTTCAAGAATTTAGAACAGATCTGTCTGGAGTCCTACGACCGTTT
CATCGGGTTAGACCTAGAAAACTTAAATGTTGATGGCTGCATTGTTAAAGCTCCCTGCGGCGGAGAGGTAGCCGGCAGATTCCCGGTTGACCGGGAAAAA
GGCACCAAACGCTCGTTAATGGTCGATGGACATGGAATCCCGATCGGGTGCGTGGTCGCCGGAGCCAATCGGCATGATTTACCGTTGTTAGCTGCAACCT
TGGACACGCTCGGCCGGTTTGGGGGCTCTCTTCCCGATCAGATCACGGTGCATCTCGATGCTGGGTATGACTCGAAGAAAACCCGCAGGCTACTCAGCGA
ATTTGGTTATAGCTGGGTGATCAGCATTAAAGGTGAGCCGCTGCAGGCTGGGACTCGGTGGGTGGTGGAGCGTACTAACTCTTGGCATAACCGGGGTTTT
AAGAAACTTAGTATCTGCACCGAACGTTGTACCCGGGTTGTGGAAGCGTTTATCGCTTTAGCCAACGCGGTGATTATTCTGCGTCGGCTTATCAAACAGG
CCTGGACTAGTTACCGCTGGGACACCCGACCGGGCCACAGACCTTAATCTATCCGCGCAATCTC
CACCCCAGGAGTACTCGTGCCTGCCCTTCCATCATCTATCATCGACCCCCTCTGGCGCCAGTTCTCCGCCTTAATCCCACCGGTTATCATCACCCACCCA
CTAGGGTGCCACCGTGCACGCATTGCTGACCGGATCATCGTCGACAAACTCATCGCAGTGCTTGTCCTCGGTGTCTCCTATATCAAGATTTCCGATTCCA
CCTGCTCAGCCACCACGATACGCACCCGCCGAGACGAGTGGATCACTGCCGGGATTTTCAAGAATTTAGAACAGATCTGTCTGGAGTCCTACGACCGTTT
CATCGGGTTAGACCTAGAAAACTTAAATGTTGATGGCTGCATTGTTAAAGCTCCCTGCGGCGGAGAGGTAGCCGGCAGATTCCCGGTTGACCGGGAAAAA
GGCACCAAACGCTCGTTAATGGTCGATGGACATGGAATCCCGATCGGGTGCGTGGTCGCCGGAGCCAATCGGCATGATTTACCGTTGTTAGCTGCAACCT
TGGACACGCTCGGCCGGTTTGGGGGCTCTCTTCCCGATCAGATCACGGTGCATCTCGATGCTGGGTATGACTCGAAGAAAACCCGCAGGCTACTCAGCGA
ATTTGGTTATAGCTGGGTGATCAGCATTAAAGGTGAGCCGCTGCAGGCTGGGACTCGGTGGGTGGTGGAGCGTACTAACTCTTGGCATAACCGGGGTTTT
AAGAAACTTAGTATCTGCACCGAACGTTGTACCCGGGTTGTGGAAGCGTTTATCGCTTTAGCCAACGCGGTGATTATTCTGCGTCGGCTTATCAAACAGG
CCTGGACTAGTTACCGCTGGGACACCCGACCGGGCCACAGACCTTAATCTATCCGCGCAATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
851 bp | 276 aa | 117 | 967 | + | No |
Chemistry : DDE
ORF sequence :
MPALPSSIIDPLWRQFSALIPPVIITHPLGCHRARIADRIIVDKLIAVLVLGVSYIKISDSTCSATTIRTRRDEWITAGIFKNLEQICLESYDRFIGLDL
ENLNVDGCIVKAPCGGEVAGRFPVDREKGTKRSLMVDGHGIPIGCVVAGANRHDLPLLAATLDTLGRFGGSLPDQITVHLDAGYDSKKTRRLLSEFGYSW
VISIKGEPLQAGTRWVVERTNSWHNRGFKKLSICTERCTRVVEAFIALANAVIILRRLIKQAWTSYRWDTRPGHRP
ENLNVDGCIVKAPCGGEVAGRFPVDREKGTKRSLMVDGHGIPIGCVVAGANRHDLPLLAATLDTLGRFGGSLPDQITVHLDAGYDSKKTRRLLSEFGYSW
VISIKGEPLQAGTRWVVERTNSWHNRGFKKLSICTERCTRVVEAFIALANAVIILRRLIKQAWTSYRWDTRPGHRP
Blast result :
Comments
ISCgl6 is 88% aa similar to ISCgl5. The STOP codon is inside the insertion site.
References
1] ISfinder annotation (2010)
2] Ikeda,M. and Nakagawa,S.(2003) Appl. Microbiol. Biotechnol. 62 (2-3), 99-109
2] Ikeda,M. and Nakagawa,S.(2003) Appl. Microbiol. Biotechnol. 62 (2-3), 99-109