ISCgl6

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003450 ND Corynebacterium glutamicum
Corynebacterium glutamicum ATCC 13032
DNA section
IS Length : 964 bp

Ends


IR Length : 16

IRL : GAGATTGCGCGGATAGGTGGATAAAAGGGAAAACATAGGGGTCATGAAAT
IRR : GAGATTGCGCGGATAGATTAAGGTCTGTGGCCCGGTCGGGTGTCCCAGCG

Insertion site


Left flankDirect repeatRight flankDR Length
TGATTAAATTTAAGGAGAAAGTT3

DNA sequence

GAGATTGCGCGGATAGGTGGATAAAAGGGAAAACATAGGGGTCATGAAATAGAACAAGCACGAGGCCTGGTAAATACGAATTCGACCAAGAAAACGTAAA
CACCCCAGGAGTACTCGTGCCTGCCCTTCCATCATCTATCATCGACCCCCTCTGGCGCCAGTTCTCCGCCTTAATCCCACCGGTTATCATCACCCACCCA
CTAGGGTGCCACCGTGCACGCATTGCTGACCGGATCATCGTCGACAAACTCATCGCAGTGCTTGTCCTCGGTGTCTCCTATATCAAGATTTCCGATTCCA
CCTGCTCAGCCACCACGATACGCACCCGCCGAGACGAGTGGATCACTGCCGGGATTTTCAAGAATTTAGAACAGATCTGTCTGGAGTCCTACGACCGTTT
CATCGGGTTAGACCTAGAAAACTTAAATGTTGATGGCTGCATTGTTAAAGCTCCCTGCGGCGGAGAGGTAGCCGGCAGATTCCCGGTTGACCGGGAAAAA
GGCACCAAACGCTCGTTAATGGTCGATGGACATGGAATCCCGATCGGGTGCGTGGTCGCCGGAGCCAATCGGCATGATTTACCGTTGTTAGCTGCAACCT
TGGACACGCTCGGCCGGTTTGGGGGCTCTCTTCCCGATCAGATCACGGTGCATCTCGATGCTGGGTATGACTCGAAGAAAACCCGCAGGCTACTCAGCGA
ATTTGGTTATAGCTGGGTGATCAGCATTAAAGGTGAGCCGCTGCAGGCTGGGACTCGGTGGGTGGTGGAGCGTACTAACTCTTGGCATAACCGGGGTTTT
AAGAAACTTAGTATCTGCACCGAACGTTGTACCCGGGTTGTGGAAGCGTTTATCGCTTTAGCCAACGCGGTGATTATTCTGCGTCGGCTTATCAAACAGG
CCTGGACTAGTTACCGCTGGGACACCCGACCGGGCCACAGACCTTAATCTATCCGCGCAATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
851 bp276 aa117967+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPALPSSIIDPLWRQFSALIPPVIITHPLGCHRARIADRIIVDKLIAVLVLGVSYIKISDSTCSATTIRTRRDEWITAGIFKNLEQICLESYDRFIGLDL
ENLNVDGCIVKAPCGGEVAGRFPVDREKGTKRSLMVDGHGIPIGCVVAGANRHDLPLLAATLDTLGRFGGSLPDQITVHLDAGYDSKKTRRLLSEFGYSW
VISIKGEPLQAGTRWVVERTNSWHNRGFKKLSICTERCTRVVEAFIALANAVIILRRLIKQAWTSYRWDTRPGHRP

 

Blast result :
Comments
ISCgl6 is 88% aa similar to ISCgl5. The STOP codon is inside the insertion site.
References
1] ISfinder annotation (2010)
2] Ikeda,M. and Nakagawa,S.(2003) Appl. Microbiol. Biotechnol. 62 (2-3), 99-109