ISSsv1
- Family IS5
- Group IS427
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_CM000951 | ND | Streptomyces sviceus | Streptomyces sviceus ATCC 29083 |
DNA section
IS Length : 967 bp
Ends
IR Length : 15/21
IRL : GAACTCGCGCAGCTAGGCTCGATGGGGTACCTCGGAAGTAGTAGAGGAAC
IRR : GAACTCGCGCAATTGGGGGCGGGGTCATGGTCGCCGGGTGGGGCGGTCGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTTCGACGACTTA | TCACCGGCTCCGG | 0 |
DNA sequence
GAACTCGCGCAGCTAGGCTCGATGGGGTACCTCGGAAGTAGTAGAGGAACAGGGCCTGGTGATCATGGAGTTGCGACGCTCTGTGATCACCGGGAGACCT
GTGCCTGCCTTGCCGTCATGGCTGACCGAACCCCTGTGGGACCAATTCGCGGCGCTGCTGCCACAGCGGCCCGTCTACGCTCCGACCCACCCGCTGGGCT
GCCACCGCACGCGGATCAGCGACCGGATCATCTTCGACAAACTGCTGCAACTCCTGCGCTTCGGCTGCTCCTACGAAGCCCTGGCGGACACCACCTGCTC
GGCCACCACGATTCGCAACCGCCGTGACGAGTGGATCCGGCTCGGCGTCTTCGCCCGGCTCCGGCACATCGCTCTGGAGGCGTACGACCGCATCGTCGGC
CTCGTTCTGGACCAGGTCGCCATCGACGGGTCGATCACCAAGGCACCCGGAGGCGGAGAAGCCGCTGGACGCTCGCCGGTCGACCGGGGCAAACAGGGCC
TCAAACGCTCGGGGATGACTGACGGGTACGGCATCCCGCTGGGCCGCGTCCTGGCCGGGGCGAACTGCCACGACTCGCCGCTGCTCGCCCCGACCCTGGA
CCTTCTGGACGGCCTGGGCCCGCTGCCCGACGACATCACCGTGAACCTCGACGCCGGCTACGACTCGGGCAGGACCCGTATCACCCTCGACGAACGCGGA
CTGCGCGGCCGGATCGCACACAGGGGCGAGAAGGCTCCCGTCCAGGCCACCGGGCGCTGGCACGTAGAGCGCACCCACGCCTGGCAGAACGCCTTCCATC
GACTCGCACGCTGCTACGAACGCCGGATCGACGTCATCAACGCCTTCTTCGACCTCACGGATGCCGTTATCACCGTGCGTAGCCTCGTTCGCCGCGCCTG
GACCACTCACCGCTGGGACGACCGCCCCACCCGGCGACCATGACCCCGCCCCCAATTGCGCGAGTTC
GTGCCTGCCTTGCCGTCATGGCTGACCGAACCCCTGTGGGACCAATTCGCGGCGCTGCTGCCACAGCGGCCCGTCTACGCTCCGACCCACCCGCTGGGCT
GCCACCGCACGCGGATCAGCGACCGGATCATCTTCGACAAACTGCTGCAACTCCTGCGCTTCGGCTGCTCCTACGAAGCCCTGGCGGACACCACCTGCTC
GGCCACCACGATTCGCAACCGCCGTGACGAGTGGATCCGGCTCGGCGTCTTCGCCCGGCTCCGGCACATCGCTCTGGAGGCGTACGACCGCATCGTCGGC
CTCGTTCTGGACCAGGTCGCCATCGACGGGTCGATCACCAAGGCACCCGGAGGCGGAGAAGCCGCTGGACGCTCGCCGGTCGACCGGGGCAAACAGGGCC
TCAAACGCTCGGGGATGACTGACGGGTACGGCATCCCGCTGGGCCGCGTCCTGGCCGGGGCGAACTGCCACGACTCGCCGCTGCTCGCCCCGACCCTGGA
CCTTCTGGACGGCCTGGGCCCGCTGCCCGACGACATCACCGTGAACCTCGACGCCGGCTACGACTCGGGCAGGACCCGTATCACCCTCGACGAACGCGGA
CTGCGCGGCCGGATCGCACACAGGGGCGAGAAGGCTCCCGTCCAGGCCACCGGGCGCTGGCACGTAGAGCGCACCCACGCCTGGCAGAACGCCTTCCATC
GACTCGCACGCTGCTACGAACGCCGGATCGACGTCATCAACGCCTTCTTCGACCTCACGGATGCCGTTATCACCGTGCGTAGCCTCGTTCGCCGCGCCTG
GACCACTCACCGCTGGGACGACCGCCCCACCCGGCGACCATGACCCCGCCCCCAATTGCGCGAGTTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 843 bp | 280 aa | 101 | 943 | + | No |
Chemistry : DDE
ORF sequence :
MPALPSWLTEPLWDQFAALLPQRPVYAPTHPLGCHRTRISDRIIFDKLLQLLRFGCSYEALADTTCSATTIRNRRDEWIRLGVFARLRHIALEAYDRIVG
LVLDQVAIDGSITKAPGGGEAAGRSPVDRGKQGLKRSGMTDGYGIPLGRVLAGANCHDSPLLAPTLDLLDGLGPLPDDITVNLDAGYDSGRTRITLDERG
LRGRIAHRGEKAPVQATGRWHVERTHAWQNAFHRLARCYERRIDVINAFFDLTDAVITVRSLVRRAWTTHRWDDRPTRRP
LVLDQVAIDGSITKAPGGGEAAGRSPVDRGKQGLKRSGMTDGYGIPLGRVLAGANCHDSPLLAPTLDLLDGLGPLPDDITVNLDAGYDSGRTRITLDERG
LRGRIAHRGEKAPVQATGRWHVERTHAWQNAFHRLARCYERRIDVINAFFDLTDAVITVRSLVRRAWTTHRWDDRPTRRP
Blast result :
Comments
ISSsv1 is 72% aa similar to ISCef8.
References
1] ISfinder annotation (2010)
2] Fischbach,M., Godfrey,P., Ward,D., Young,S., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Bochicchio,J., Borenstein,D., Chapman,S.B., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D.I., Hepburn,T.A., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Richards,J., Roberts,A., Saif,S., Shea,T.D., Shenoy,N., Sisk,P., Stolte,C., Sykes,S.N., Thomson,T., Walk,T., White,J., Yandava,C., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Wieland-Brown,L.C., Haas,B., Nusbaum,C. and Birren,B. (2009) Direct submission GenBank.
2] Fischbach,M., Godfrey,P., Ward,D., Young,S., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Bochicchio,J., Borenstein,D., Chapman,S.B., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D.I., Hepburn,T.A., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Richards,J., Roberts,A., Saif,S., Shea,T.D., Shenoy,N., Sisk,P., Stolte,C., Sykes,S.N., Thomson,T., Walk,T., White,J., Yandava,C., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Wieland-Brown,L.C., Haas,B., Nusbaum,C. and Birren,B. (2009) Direct submission GenBank.