ISCgl5

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009342 ND Corynebacterium glutamicum
Corynebacterium glutamicum R
DNA section
IS Length : 961 bp

Ends


IR Length : 16/17

IRL : GAGATTGCGCGGATAGGGCGGTTGCGGTGAGGTGATAAACGAGGGCAGGC
IRR : GAGATTGCGTGGATAGGTGTCATGGTCGGCGGGCAGGCCGGGTATCACAG

Insertion site


Left flankDirect repeatRight flankDR Length
GCACTAAGAATAAGAAGAAATCT3

DNA sequence

GAGATTGCGCGGATAGGGCGGTTGCGGTGAGGTGATAAACGAGGGCAGGCACGAGACCTGGTACATACGGATTCGACCAAGAAAACGTAAAATATCTCAG
GAGCACTCGTGCCTGCCGTCCCATCATCCATCATCGAACCTATCTGGGACCAATTCGCCGCGCTGATCCCACCGATCATCGACACCCACCCGCTGGGATG
CCACCGTCTACGGATCGCTGACCGGATCATCTTCGACAAGCTCATCCAGGTTCTCGTCCTCGGCGCCTCCTACACCAAGATCTCCGATTCCACGTGTTCA
GCGACCACGCTGCGCACCCGCCGGGATGAGTGGATCACCACCGGCATCTTCTACACGCTGGAGCAGATCTGCCTGGAGTTCTACGACCGGATCATCGGAC
TCGAGCTGGACAACTTAAGCGTCGACGGGTGTATTGTCAAAGCCCCCTGTGGCGGGGAAGTCGCGGGCCGTTCCCCGGTTGACCGGGGAAAACAAGGAAC
CAAACGCTCTCTGATGGTCGACGGCGCAGGTATCCCGATCGGGTGCGTGGTGGCGGGAGCCAACCGGCATGACTCGCCGTTGCTGCGCCCCACCCTGGAC
AAGCTCGGCCGGTTCGGGTTCGATCTGCCTGAGGCGATCACGGTGCATCTGGATGCCGGTTATGACTCGAAGAAGACGAGGAGCCTGCTGGAAGAACTTG
GTTGTGACGGGGTGATCAGTACCAAGGGTGAGCCCTTGCAGGCTGGGGGCCGGTGGGTGGTGGAGCGGACGAATTCGTGGCATAACCGTGGCTTCAAGAA
ACTGGCACTTTGTACTGAGCGGCGGGCCCGGGTCGTGGAGGCGTTTATCGCGTTGGCGAACGCGGTCATCATCGTGCGTCGGCTCATCCGGCAGGCCTGG
ACCAGCTATCGCTGTGATACCCGGCCTGCCCGCCGACCATGACACCTATCCACGCAATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
834 bp277 aa109942+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPAVPSSIIEPIWDQFAALIPPIIDTHPLGCHRLRIADRIIFDKLIQVLVLGASYTKISDSTCSATTLRTRRDEWITTGIFYTLEQICLEFYDRIIGLEL
DNLSVDGCIVKAPCGGEVAGRSPVDRGKQGTKRSLMVDGAGIPIGCVVAGANRHDSPLLRPTLDKLGRFGFDLPEAITVHLDAGYDSKKTRSLLEELGCD
GVISTKGEPLQAGGRWVVERTNSWHNRGFKKLALCTERRARVVEAFIALANAVIIVRRLIRQAWTSYRCDTRPARRP

 

Blast result :
Comments
ISCgl5 is 91% aa similar to ISCef8.
References
1] ISfinder annotation (2010)
2] Yukawa,H., Omumasaba,C.A., Nonaka,H., Kos,P., Okai,N., Suzuki,N., Suda,M., Tsuge,Y., Watanabe,J., Ikeda,Y., Vertes,A.A. and Inui,M. (2007) Microbiology (Reading, Engl.) 153 (PT 4), 1042-1058.