ISCgl5
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009342 | ND | Corynebacterium glutamicum | Corynebacterium glutamicum R |
DNA section
IS Length : 961 bp
Ends
IR Length : 16/17
IRL : GAGATTGCGCGGATAGGGCGGTTGCGGTGAGGTGATAAACGAGGGCAGGC
IRR : GAGATTGCGTGGATAGGTGTCATGGTCGGCGGGCAGGCCGGGTATCACAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCACTAAGAA | TAA | GAAGAAATCT | 3 |
DNA sequence
GAGATTGCGCGGATAGGGCGGTTGCGGTGAGGTGATAAACGAGGGCAGGCACGAGACCTGGTACATACGGATTCGACCAAGAAAACGTAAAATATCTCAG
GAGCACTCGTGCCTGCCGTCCCATCATCCATCATCGAACCTATCTGGGACCAATTCGCCGCGCTGATCCCACCGATCATCGACACCCACCCGCTGGGATG
CCACCGTCTACGGATCGCTGACCGGATCATCTTCGACAAGCTCATCCAGGTTCTCGTCCTCGGCGCCTCCTACACCAAGATCTCCGATTCCACGTGTTCA
GCGACCACGCTGCGCACCCGCCGGGATGAGTGGATCACCACCGGCATCTTCTACACGCTGGAGCAGATCTGCCTGGAGTTCTACGACCGGATCATCGGAC
TCGAGCTGGACAACTTAAGCGTCGACGGGTGTATTGTCAAAGCCCCCTGTGGCGGGGAAGTCGCGGGCCGTTCCCCGGTTGACCGGGGAAAACAAGGAAC
CAAACGCTCTCTGATGGTCGACGGCGCAGGTATCCCGATCGGGTGCGTGGTGGCGGGAGCCAACCGGCATGACTCGCCGTTGCTGCGCCCCACCCTGGAC
AAGCTCGGCCGGTTCGGGTTCGATCTGCCTGAGGCGATCACGGTGCATCTGGATGCCGGTTATGACTCGAAGAAGACGAGGAGCCTGCTGGAAGAACTTG
GTTGTGACGGGGTGATCAGTACCAAGGGTGAGCCCTTGCAGGCTGGGGGCCGGTGGGTGGTGGAGCGGACGAATTCGTGGCATAACCGTGGCTTCAAGAA
ACTGGCACTTTGTACTGAGCGGCGGGCCCGGGTCGTGGAGGCGTTTATCGCGTTGGCGAACGCGGTCATCATCGTGCGTCGGCTCATCCGGCAGGCCTGG
ACCAGCTATCGCTGTGATACCCGGCCTGCCCGCCGACCATGACACCTATCCACGCAATCTC
GAGCACTCGTGCCTGCCGTCCCATCATCCATCATCGAACCTATCTGGGACCAATTCGCCGCGCTGATCCCACCGATCATCGACACCCACCCGCTGGGATG
CCACCGTCTACGGATCGCTGACCGGATCATCTTCGACAAGCTCATCCAGGTTCTCGTCCTCGGCGCCTCCTACACCAAGATCTCCGATTCCACGTGTTCA
GCGACCACGCTGCGCACCCGCCGGGATGAGTGGATCACCACCGGCATCTTCTACACGCTGGAGCAGATCTGCCTGGAGTTCTACGACCGGATCATCGGAC
TCGAGCTGGACAACTTAAGCGTCGACGGGTGTATTGTCAAAGCCCCCTGTGGCGGGGAAGTCGCGGGCCGTTCCCCGGTTGACCGGGGAAAACAAGGAAC
CAAACGCTCTCTGATGGTCGACGGCGCAGGTATCCCGATCGGGTGCGTGGTGGCGGGAGCCAACCGGCATGACTCGCCGTTGCTGCGCCCCACCCTGGAC
AAGCTCGGCCGGTTCGGGTTCGATCTGCCTGAGGCGATCACGGTGCATCTGGATGCCGGTTATGACTCGAAGAAGACGAGGAGCCTGCTGGAAGAACTTG
GTTGTGACGGGGTGATCAGTACCAAGGGTGAGCCCTTGCAGGCTGGGGGCCGGTGGGTGGTGGAGCGGACGAATTCGTGGCATAACCGTGGCTTCAAGAA
ACTGGCACTTTGTACTGAGCGGCGGGCCCGGGTCGTGGAGGCGTTTATCGCGTTGGCGAACGCGGTCATCATCGTGCGTCGGCTCATCCGGCAGGCCTGG
ACCAGCTATCGCTGTGATACCCGGCCTGCCCGCCGACCATGACACCTATCCACGCAATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
834 bp | 277 aa | 109 | 942 | + | No |
Chemistry : DDE
ORF sequence :
MPAVPSSIIEPIWDQFAALIPPIIDTHPLGCHRLRIADRIIFDKLIQVLVLGASYTKISDSTCSATTLRTRRDEWITTGIFYTLEQICLEFYDRIIGLEL
DNLSVDGCIVKAPCGGEVAGRSPVDRGKQGTKRSLMVDGAGIPIGCVVAGANRHDSPLLRPTLDKLGRFGFDLPEAITVHLDAGYDSKKTRSLLEELGCD
GVISTKGEPLQAGGRWVVERTNSWHNRGFKKLALCTERRARVVEAFIALANAVIIVRRLIRQAWTSYRCDTRPARRP
DNLSVDGCIVKAPCGGEVAGRSPVDRGKQGTKRSLMVDGAGIPIGCVVAGANRHDSPLLRPTLDKLGRFGFDLPEAITVHLDAGYDSKKTRSLLEELGCD
GVISTKGEPLQAGGRWVVERTNSWHNRGFKKLALCTERRARVVEAFIALANAVIIVRRLIRQAWTSYRCDTRPARRP
Blast result :
Comments
ISCgl5 is 91% aa similar to ISCef8.
References
1] ISfinder annotation (2010)
2] Yukawa,H., Omumasaba,C.A., Nonaka,H., Kos,P., Okai,N., Suzuki,N., Suda,M., Tsuge,Y., Watanabe,J., Ikeda,Y., Vertes,A.A. and Inui,M. (2007) Microbiology (Reading, Engl.) 153 (PT 4), 1042-1058.
2] Yukawa,H., Omumasaba,C.A., Nonaka,H., Kos,P., Okai,N., Suzuki,N., Suda,M., Tsuge,Y., Watanabe,J., Ikeda,Y., Vertes,A.A. and Inui,M. (2007) Microbiology (Reading, Engl.) 153 (PT 4), 1042-1058.