ISRer2
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005073 | ND | Rhodococcus erythropolis | Rhodococcus erythropolis plasmid pBD2 |
DNA section
IS Length : 1003 bp
Ends
IR Length : 16/19
IRL : GAGCGTCCGGCAATTGAGGCGTGGTGGGCGTGACCGCCGCGGTGTTCGGT
IRR : GACCGACCGGCAAATGATGATCACTTGAGTCGTCGGGTGGTGGGCCGGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTGCAGTAC | TAA | CATGAAATCG | 3 |
DNA sequence
GAGCGTCCGGCAATTGAGGCGTGGTGGGCGTGACCGCCGCGGTGTTCGGTGTGTCGTTGCAGGCAGAGGCACGGGCCCCGAGTTGATCATGTGATTGCTG
AAGTCCCACGATCACAGGAATGCCCGTGCCTCTGCTGCCAGTCTCGCTCATCGAACCCCTCTGGGTCGAGTTCTCCGCCCTCCTGAGCGTCGCCGACCGA
CCCGAGTTCTCCCCGAACCACCCGTGGGGCTGTCACCGCCGGCGGGTACCGGACCGGATCGTGTTCGAGCATGTCCTCGCTGCTCTGGTGCACGGCAGTG
GCTACGAACGCATCGCCACCGCCGGTTGCTCCGATCGCACCATCCGCCGCCGGCTCGACCAGTGGGCCGACCGCGGACTCGGCATCGAGGTGCTCCGCTC
CGCCCTGACCGCGTACGACCGGATGCTCGGCCTCGACCTCGATCACCTCTCGGTCGACGGATCGATCACCAAATCCCCGTTCGGAGGCGAGGTTTCGGGT
CGATCGCCGGTCGATCGCGGGAAGCAGGGCACGAAACGGTCGGTGGTGTGCGACGGCGGAGGGATTCCGCTGGCGCTGGTGTCGGCCGGGGCGAACCGGC
ACGACTCACCACTGCTCGAACCCACGATCCGGGCCGTGCCCGACATGATCGGGCCGCTGCCGCAGCACTCGTGTGTGCACCTCGATCGCGGCTACGACTC
GGCCAAGACCAGGGATCTGCTCGAGGAGTTGGGGTACGACTACGACATCGCTCGCAAGGGGGTGCCCGCCCCGATTCAGGCCGGAAAACGGTGGGTGGTC
GAGCGTACGCACGCGTGGATGAACGGGTTCGGCAAGCTGCGTCGCTGGACCGACAAACGCGCCGTGATCGTCGACTTCTATCTCGCCTTGGCCGCCGCGC
TGACCGTGATCAGGCGCCTGATCAACCGTGCACGCACGTACTACCGGTGGCCGACCCGGCCCACCACCCGACGACTCAAGTGATCATCATTTGCCGGTCG
GTC
AAGTCCCACGATCACAGGAATGCCCGTGCCTCTGCTGCCAGTCTCGCTCATCGAACCCCTCTGGGTCGAGTTCTCCGCCCTCCTGAGCGTCGCCGACCGA
CCCGAGTTCTCCCCGAACCACCCGTGGGGCTGTCACCGCCGGCGGGTACCGGACCGGATCGTGTTCGAGCATGTCCTCGCTGCTCTGGTGCACGGCAGTG
GCTACGAACGCATCGCCACCGCCGGTTGCTCCGATCGCACCATCCGCCGCCGGCTCGACCAGTGGGCCGACCGCGGACTCGGCATCGAGGTGCTCCGCTC
CGCCCTGACCGCGTACGACCGGATGCTCGGCCTCGACCTCGATCACCTCTCGGTCGACGGATCGATCACCAAATCCCCGTTCGGAGGCGAGGTTTCGGGT
CGATCGCCGGTCGATCGCGGGAAGCAGGGCACGAAACGGTCGGTGGTGTGCGACGGCGGAGGGATTCCGCTGGCGCTGGTGTCGGCCGGGGCGAACCGGC
ACGACTCACCACTGCTCGAACCCACGATCCGGGCCGTGCCCGACATGATCGGGCCGCTGCCGCAGCACTCGTGTGTGCACCTCGATCGCGGCTACGACTC
GGCCAAGACCAGGGATCTGCTCGAGGAGTTGGGGTACGACTACGACATCGCTCGCAAGGGGGTGCCCGCCCCGATTCAGGCCGGAAAACGGTGGGTGGTC
GAGCGTACGCACGCGTGGATGAACGGGTTCGGCAAGCTGCGTCGCTGGACCGACAAACGCGCCGTGATCGTCGACTTCTATCTCGCCTTGGCCGCCGCGC
TGACCGTGATCAGGCGCCTGATCAACCGTGCACGCACGTACTACCGGTGGCCGACCCGGCCCACCACCCGACGACTCAAGTGATCATCATTTGCCGGTCG
GTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
864 bp | 287 aa | 120 | 983 | + | No |
Chemistry : DDE
ORF sequence :
MPVPLLPVSLIEPLWVEFSALLSVADRPEFSPNHPWGCHRRRVPDRIVFEHVLAALVHGSGYERIATAGCSDRTIRRRLDQWADRGLGIEVLRSALTAYD
RMLGLDLDHLSVDGSITKSPFGGEVSGRSPVDRGKQGTKRSVVCDGGGIPLALVSAGANRHDSPLLEPTIRAVPDMIGPLPQHSCVHLDRGYDSAKTRDL
LEELGYDYDIARKGVPAPIQAGKRWVVERTHAWMNGFGKLRRWTDKRAVIVDFYLALAAALTVIRRLINRARTYYRWPTRPTTRRLK
RMLGLDLDHLSVDGSITKSPFGGEVSGRSPVDRGKQGTKRSVVCDGGGIPLALVSAGANRHDSPLLEPTIRAVPDMIGPLPQHSCVHLDRGYDSAKTRDL
LEELGYDYDIARKGVPAPIQAGKRWVVERTHAWMNGFGKLRRWTDKRAVIVDFYLALAAALTVIRRLINRARTYYRWPTRPTTRRLK
Blast result :
Comments
ISRer2 is 70% aa similar to ISAar38.
References
1] ISfinder annotation (2010)
2] Stecker,C., Johann,A., Herzberg,C., Averhoff,B. and Gottschalk,G. (2003) J. Bacteriol. 185 (17), 5269-5274.
2] Stecker,C., Johann,A., Herzberg,C., Averhoff,B. and Gottschalk,G. (2003) J. Bacteriol. 185 (17), 5269-5274.