ISRer2

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005073 ND Rhodococcus erythropolis
Rhodococcus erythropolis plasmid pBD2
DNA section
IS Length : 1003 bp

Ends


IR Length : 16/19

IRL : GAGCGTCCGGCAATTGAGGCGTGGTGGGCGTGACCGCCGCGGTGTTCGGT
IRR : GACCGACCGGCAAATGATGATCACTTGAGTCGTCGGGTGGTGGGCCGGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GTTGCAGTACTAACATGAAATCG3

DNA sequence

GAGCGTCCGGCAATTGAGGCGTGGTGGGCGTGACCGCCGCGGTGTTCGGTGTGTCGTTGCAGGCAGAGGCACGGGCCCCGAGTTGATCATGTGATTGCTG
AAGTCCCACGATCACAGGAATGCCCGTGCCTCTGCTGCCAGTCTCGCTCATCGAACCCCTCTGGGTCGAGTTCTCCGCCCTCCTGAGCGTCGCCGACCGA
CCCGAGTTCTCCCCGAACCACCCGTGGGGCTGTCACCGCCGGCGGGTACCGGACCGGATCGTGTTCGAGCATGTCCTCGCTGCTCTGGTGCACGGCAGTG
GCTACGAACGCATCGCCACCGCCGGTTGCTCCGATCGCACCATCCGCCGCCGGCTCGACCAGTGGGCCGACCGCGGACTCGGCATCGAGGTGCTCCGCTC
CGCCCTGACCGCGTACGACCGGATGCTCGGCCTCGACCTCGATCACCTCTCGGTCGACGGATCGATCACCAAATCCCCGTTCGGAGGCGAGGTTTCGGGT
CGATCGCCGGTCGATCGCGGGAAGCAGGGCACGAAACGGTCGGTGGTGTGCGACGGCGGAGGGATTCCGCTGGCGCTGGTGTCGGCCGGGGCGAACCGGC
ACGACTCACCACTGCTCGAACCCACGATCCGGGCCGTGCCCGACATGATCGGGCCGCTGCCGCAGCACTCGTGTGTGCACCTCGATCGCGGCTACGACTC
GGCCAAGACCAGGGATCTGCTCGAGGAGTTGGGGTACGACTACGACATCGCTCGCAAGGGGGTGCCCGCCCCGATTCAGGCCGGAAAACGGTGGGTGGTC
GAGCGTACGCACGCGTGGATGAACGGGTTCGGCAAGCTGCGTCGCTGGACCGACAAACGCGCCGTGATCGTCGACTTCTATCTCGCCTTGGCCGCCGCGC
TGACCGTGATCAGGCGCCTGATCAACCGTGCACGCACGTACTACCGGTGGCCGACCCGGCCCACCACCCGACGACTCAAGTGATCATCATTTGCCGGTCG
GTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
864 bp287 aa120983+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPVPLLPVSLIEPLWVEFSALLSVADRPEFSPNHPWGCHRRRVPDRIVFEHVLAALVHGSGYERIATAGCSDRTIRRRLDQWADRGLGIEVLRSALTAYD
RMLGLDLDHLSVDGSITKSPFGGEVSGRSPVDRGKQGTKRSVVCDGGGIPLALVSAGANRHDSPLLEPTIRAVPDMIGPLPQHSCVHLDRGYDSAKTRDL
LEELGYDYDIARKGVPAPIQAGKRWVVERTHAWMNGFGKLRRWTDKRAVIVDFYLALAAALTVIRRLINRARTYYRWPTRPTTRRLK

 

Blast result :
Comments
ISRer2 is 70% aa similar to ISAar38.
References
1] ISfinder annotation (2010)
2] Stecker,C., Johann,A., Herzberg,C., Averhoff,B. and Gottschalk,G. (2003) J. Bacteriol. 185 (17), 5269-5274.