ISCef8

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004320 ND Corynebacterium efficiens
Corynebacterium efficiens YS-314 plasmid pCE3
DNA section
IS Length : 966 bp

Ends


IR Length : 16/17

IRL : GAGATTGCGCGGATAGGAAGATACAGGGGGCCACGGTGGGGTGGTGAACA
IRR : GAGATCGCGCGGATAGGTCAGGGTTGTTGGGTCGGGCGAGTCTCCCAGCG

Insertion site


Left flankDirect repeatRight flankDR Length
GACCCTGCTCTTATTTACTGATG3

DNA sequence

GAGATTGCGCGGATAGGAAGATACAGGGGGCCACGGTGGGGTGGTGAACAAGAGCAGGCACGAGGCCTGGTAGATACGGATTCGACCAAGAAAACGTACA
CCACTCAGGAGCACTCGTGCCTGCCCTTCCATCCTCTATCATCGACCCCCTCTGGTGCCAGTTCGCCGCGCTGATCCCACCCGTGACCGACACCCACCCA
CTTCGGTGCCACCGCCCACGCATCCCGGACCGGATCATCTTCGACAAGCTCATCCAGGTCCTCGTCCTCGGCGCCTCGTATGTCAAGATCGCCGACACGA
CATGCTCGGCCACCACCTTGCGCACCCGCCGGGATGAATGGATCACCGCTGGCATCTTCGAGCAGCTGGAACAGATCTGTTTGGAATTCTGCGACCGTAT
CGTCGGACTCGATCTGGAAAACTTAAGCGTGGACGGGTGCATCGTCAAAGCCCCCTGCGGTGGTGAAGCCGCCGGGCGATCCCCGGTTGACCGGGGCAAA
CAAGGCACGAAACGCTCCCTGCTGGTCGACGGCGCAGGTATCCCGCTTGGGTGCGTGGTCGCCGGTGCCAACCGGCATGACTCACCGTTGTTGCGCCCGA
CATTGGAGAAACTAGGCCGGTTCGGACTCGCCCTGCCCGATCAGATCACCGTGCATCTGGACGCCGGATACGACTCAAGCAAGACCCGCAGTCTGTTGAC
CGAACTTGGCTGCGAGTGGGTGATCAGCCAGAAAGGGGTCCCGTTGCAGGCCGGGGCCCGGTGGGTGGTGGAACGGACGAACTCGTGGCATAACCGCGGG
TTCAAGAAACTGCAGGTGTGTACCGAACGTCGCATCCGGGTCATTGAAGCGTTCATTTCTTTAGCCAACGCCGTGATCGTTGTTCGCCGGCTGGTCCGGG
GGCCTGGTGCACCTATCGCTGGGAGACTCGCCCGACCCAACAACCCTGACCTATCCGCGCGATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
861 bp286 aa117977+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPALPSSIIDPLWCQFAALIPPVTDTHPLRCHRPRIPDRIIFDKLIQVLVLGASYVKIADTTCSATTLRTRRDEWITAGIFEQLEQICLEFCDRIVGLDL
ENLSVDGCIVKAPCGGEAAGRSPVDRGKQGTKRSLLVDGAGIPLGCVVAGANRHDSPLLRPTLEKLGRFGLALPDQITVHLDAGYDSSKTRSLLTELGCE
WVISQKGVPLQAGARWVVERTNSWHNRGFKKLQVCTERRIRVIEAFISLANAVIVVRRLVRGPGAPIAGRLARPNNPDLSARSLIY

 

Blast result :
Comments
ISCef8 is 87% aa similar to ISAar38. There is no STOP cocon inside the insertion sequence, the transposase use the first after the IRR's end.
References
1] ISfinder annotation (2010)
2] Kawarabayasi,Y., Yamazaki,J., Hino,Y. and Kikuchi,H. (2002) Direct submission GenBank.