ISCef8
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004320 | ND | Corynebacterium efficiens | Corynebacterium efficiens YS-314 plasmid pCE3 |
DNA section
IS Length : 966 bp
Ends
IR Length : 16/17
IRL : GAGATTGCGCGGATAGGAAGATACAGGGGGCCACGGTGGGGTGGTGAACA
IRR : GAGATCGCGCGGATAGGTCAGGGTTGTTGGGTCGGGCGAGTCTCCCAGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACCCTGCTC | TTA | TTTACTGATG | 3 |
DNA sequence
GAGATTGCGCGGATAGGAAGATACAGGGGGCCACGGTGGGGTGGTGAACAAGAGCAGGCACGAGGCCTGGTAGATACGGATTCGACCAAGAAAACGTACA
CCACTCAGGAGCACTCGTGCCTGCCCTTCCATCCTCTATCATCGACCCCCTCTGGTGCCAGTTCGCCGCGCTGATCCCACCCGTGACCGACACCCACCCA
CTTCGGTGCCACCGCCCACGCATCCCGGACCGGATCATCTTCGACAAGCTCATCCAGGTCCTCGTCCTCGGCGCCTCGTATGTCAAGATCGCCGACACGA
CATGCTCGGCCACCACCTTGCGCACCCGCCGGGATGAATGGATCACCGCTGGCATCTTCGAGCAGCTGGAACAGATCTGTTTGGAATTCTGCGACCGTAT
CGTCGGACTCGATCTGGAAAACTTAAGCGTGGACGGGTGCATCGTCAAAGCCCCCTGCGGTGGTGAAGCCGCCGGGCGATCCCCGGTTGACCGGGGCAAA
CAAGGCACGAAACGCTCCCTGCTGGTCGACGGCGCAGGTATCCCGCTTGGGTGCGTGGTCGCCGGTGCCAACCGGCATGACTCACCGTTGTTGCGCCCGA
CATTGGAGAAACTAGGCCGGTTCGGACTCGCCCTGCCCGATCAGATCACCGTGCATCTGGACGCCGGATACGACTCAAGCAAGACCCGCAGTCTGTTGAC
CGAACTTGGCTGCGAGTGGGTGATCAGCCAGAAAGGGGTCCCGTTGCAGGCCGGGGCCCGGTGGGTGGTGGAACGGACGAACTCGTGGCATAACCGCGGG
TTCAAGAAACTGCAGGTGTGTACCGAACGTCGCATCCGGGTCATTGAAGCGTTCATTTCTTTAGCCAACGCCGTGATCGTTGTTCGCCGGCTGGTCCGGG
GGCCTGGTGCACCTATCGCTGGGAGACTCGCCCGACCCAACAACCCTGACCTATCCGCGCGATCTC
CCACTCAGGAGCACTCGTGCCTGCCCTTCCATCCTCTATCATCGACCCCCTCTGGTGCCAGTTCGCCGCGCTGATCCCACCCGTGACCGACACCCACCCA
CTTCGGTGCCACCGCCCACGCATCCCGGACCGGATCATCTTCGACAAGCTCATCCAGGTCCTCGTCCTCGGCGCCTCGTATGTCAAGATCGCCGACACGA
CATGCTCGGCCACCACCTTGCGCACCCGCCGGGATGAATGGATCACCGCTGGCATCTTCGAGCAGCTGGAACAGATCTGTTTGGAATTCTGCGACCGTAT
CGTCGGACTCGATCTGGAAAACTTAAGCGTGGACGGGTGCATCGTCAAAGCCCCCTGCGGTGGTGAAGCCGCCGGGCGATCCCCGGTTGACCGGGGCAAA
CAAGGCACGAAACGCTCCCTGCTGGTCGACGGCGCAGGTATCCCGCTTGGGTGCGTGGTCGCCGGTGCCAACCGGCATGACTCACCGTTGTTGCGCCCGA
CATTGGAGAAACTAGGCCGGTTCGGACTCGCCCTGCCCGATCAGATCACCGTGCATCTGGACGCCGGATACGACTCAAGCAAGACCCGCAGTCTGTTGAC
CGAACTTGGCTGCGAGTGGGTGATCAGCCAGAAAGGGGTCCCGTTGCAGGCCGGGGCCCGGTGGGTGGTGGAACGGACGAACTCGTGGCATAACCGCGGG
TTCAAGAAACTGCAGGTGTGTACCGAACGTCGCATCCGGGTCATTGAAGCGTTCATTTCTTTAGCCAACGCCGTGATCGTTGTTCGCCGGCTGGTCCGGG
GGCCTGGTGCACCTATCGCTGGGAGACTCGCCCGACCCAACAACCCTGACCTATCCGCGCGATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
861 bp | 286 aa | 117 | 977 | + | No |
Chemistry : DDE
ORF sequence :
MPALPSSIIDPLWCQFAALIPPVTDTHPLRCHRPRIPDRIIFDKLIQVLVLGASYVKIADTTCSATTLRTRRDEWITAGIFEQLEQICLEFCDRIVGLDL
ENLSVDGCIVKAPCGGEAAGRSPVDRGKQGTKRSLLVDGAGIPLGCVVAGANRHDSPLLRPTLEKLGRFGLALPDQITVHLDAGYDSSKTRSLLTELGCE
WVISQKGVPLQAGARWVVERTNSWHNRGFKKLQVCTERRIRVIEAFISLANAVIVVRRLVRGPGAPIAGRLARPNNPDLSARSLIY
ENLSVDGCIVKAPCGGEAAGRSPVDRGKQGTKRSLLVDGAGIPLGCVVAGANRHDSPLLRPTLEKLGRFGLALPDQITVHLDAGYDSSKTRSLLTELGCE
WVISQKGVPLQAGARWVVERTNSWHNRGFKKLQVCTERRIRVIEAFISLANAVIVVRRLVRGPGAPIAGRLARPNNPDLSARSLIY
Blast result :
Comments
ISCef8 is 87% aa similar to ISAar38. There is no STOP cocon inside the insertion sequence, the transposase use the first after the IRR's end.
References
1] ISfinder annotation (2010)
2] Kawarabayasi,Y., Yamazaki,J., Hino,Y. and Kikuchi,H. (2002) Direct submission GenBank.
2] Kawarabayasi,Y., Yamazaki,J., Hino,Y. and Kikuchi,H. (2002) Direct submission GenBank.