ISStro1
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_013595 | ND | Streptosporangium roseum | Streptosporangium roseum DSM 43021 |
DNA section
IS Length : 973 bp
Ends
IR Length : 12/17
IRL : GAGCGCCCGGTAGTAGGCGTGCTGGGCATGCCCAGCACGCCCCCGGATAC
IRR : GACCGACCGGCAAATGGATCACTTGAGGCGTCGGGTGGTGGGGCGGCCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATGTCACGTTAA | TTAGCCCCAGCCC | 0 |
DNA sequence
GAGCGCCCGGTAGTAGGCGTGCTGGGCATGCCCAGCACGCCCCCGGATACCGAGCAGGCACGAGCCCAGGTGATCATGGAGTTCTCTACGCTCAGTGATC
ACCGGAGGGCTCGTGCCTGTCCTGCCATCATGCCTGCTCGGACCCCTGTGGGACCAGTTCGTGGCTCTGCTTCCCGAACACGTCGACGCGCACCCGCTTG
GCTGCCACAACCCGCGCATCCCGGACCGGACCGTCTTCGAGCACGTGATCGCTGCGCTGGTCCACGGCTCCGGCTACGAGCGCATCGCCACTCCGGGCTG
CTCCGACCGTACGATCAGACGCCGCGTCAACTACTGGGCCCAGATTGGGATAGTTGAGAAGATCCACGCGCTCGCCCTACAGGCGTACGACCGTATGATC
GGCCTGCAACTCGACGAACTCTCCGTGGATGGCTGCATCACCAAGGCACCTGGCGGCGGGGAGAGCGCCGGCCGCTCCCCGGTGGACCGAGGCAAACAGG
GCCTGAAGCGTTCGGTGGCCACCGAAGCCACCGGCGTCCCGCTCGGCATCGTCTCGGCCGGGGCCAACCGGCACGATTCCCCGCTGCTCGTGCCCACCCT
GAAGGTCACCAAGGAACAGGTCGGCGAGCTGCCCGACCGGGTCAACGTGAACCTGGACCGCGGCTACGACAGCGACAAGACCCGATCTGCGCTTGGTGAG
TTGGGCTTCACTGGCGAGATCGCCCGCAAAGGCATCCCCGCCCCGATCCAGGCCGGCAAGAGGTGGGTGGTGGAGCGGAGCCACGCATGGATGAACGGCT
TCGGCAAGTTGCGGCGCTGTACCGAGAAGCGCAGCCGCGTCGTGGACTTCTACCTCTATCTGTCCGCAGCGATCGTCACGCTGCGTATGCTCATCCGCCG
CGCGACCCCGCGCTACCGCTGGGACGGCCGCCCCACCACCCGACGCCTCAAGTGATCCATTTGCCGGTCGGTC
ACCGGAGGGCTCGTGCCTGTCCTGCCATCATGCCTGCTCGGACCCCTGTGGGACCAGTTCGTGGCTCTGCTTCCCGAACACGTCGACGCGCACCCGCTTG
GCTGCCACAACCCGCGCATCCCGGACCGGACCGTCTTCGAGCACGTGATCGCTGCGCTGGTCCACGGCTCCGGCTACGAGCGCATCGCCACTCCGGGCTG
CTCCGACCGTACGATCAGACGCCGCGTCAACTACTGGGCCCAGATTGGGATAGTTGAGAAGATCCACGCGCTCGCCCTACAGGCGTACGACCGTATGATC
GGCCTGCAACTCGACGAACTCTCCGTGGATGGCTGCATCACCAAGGCACCTGGCGGCGGGGAGAGCGCCGGCCGCTCCCCGGTGGACCGAGGCAAACAGG
GCCTGAAGCGTTCGGTGGCCACCGAAGCCACCGGCGTCCCGCTCGGCATCGTCTCGGCCGGGGCCAACCGGCACGATTCCCCGCTGCTCGTGCCCACCCT
GAAGGTCACCAAGGAACAGGTCGGCGAGCTGCCCGACCGGGTCAACGTGAACCTGGACCGCGGCTACGACAGCGACAAGACCCGATCTGCGCTTGGTGAG
TTGGGCTTCACTGGCGAGATCGCCCGCAAAGGCATCCCCGCCCCGATCCAGGCCGGCAAGAGGTGGGTGGTGGAGCGGAGCCACGCATGGATGAACGGCT
TCGGCAAGTTGCGGCGCTGTACCGAGAAGCGCAGCCGCGTCGTGGACTTCTACCTCTATCTGTCCGCAGCGATCGTCACGCTGCGTATGCTCATCCGCCG
CGCGACCCCGCGCTACCGCTGGGACGGCCGCCCCACCACCCGACGCCTCAAGTGATCCATTTGCCGGTCGGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
843 bp | 280 aa | 113 | 955 | + | No |
Chemistry : DDE
ORF sequence :
MPVLPSCLLGPLWDQFVALLPEHVDAHPLGCHNPRIPDRTVFEHVIAALVHGSGYERIATPGCSDRTIRRRVNYWAQIGIVEKIHALALQAYDRMIGLQL
DELSVDGCITKAPGGGESAGRSPVDRGKQGLKRSVATEATGVPLGIVSAGANRHDSPLLVPTLKVTKEQVGELPDRVNVNLDRGYDSDKTRSALGELGFT
GEIARKGIPAPIQAGKRWVVERSHAWMNGFGKLRRCTEKRSRVVDFYLYLSAAIVTLRMLIRRATPRYRWDGRPTTRRLK
DELSVDGCITKAPGGGESAGRSPVDRGKQGLKRSVATEATGVPLGIVSAGANRHDSPLLVPTLKVTKEQVGELPDRVNVNLDRGYDSDKTRSALGELGFT
GEIARKGIPAPIQAGKRWVVERSHAWMNGFGKLRRCTEKRSRVVDFYLYLSAAIVTLRMLIRRATPRYRWDGRPTTRRLK
Blast result :
Comments
ISStro1 is 70% aa similar to ISAAr38.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Sims,D., Meinche,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Sims,D., Meinche,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission GenBank.