ISPrst2

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABJD02000085 ND Providencia stuartii
Providencia stuartii ATCC 25827
DNA section
IS Length : 867 bp

Ends


IR Length : 17/21

IRL : TAACCTATCCCAAAAGGAATTGTCAGATAATACATAATGATAATTTCTGA
IRR : GAACCTATCCCAATAGGGTTTTGTTCCAGACAATGATACCACAGGCAAAA

Insertion site


Left flankDirect repeatRight flankDR Length
TAGATACCCTAATTAGTGTTGGG0

DNA sequence

TAACCTATCCCAAAAGGAATTGTCAGATAATACATAATGATAATTTCTGAGGGCGAAGCGTGACGGGCAACAAGTGGCAGATCAGTGATGGACTCTGGGA
GAAAATGGCCCCACTGATTCCGGAGCATAAAACTCACCATCCTCTGGGTACGCACCGCAAGCGGGTTGATAATCGCGCTGCAATGAACGCCATTTTCTTC
GTACTCAGGACGGGTTGCCAGTGGAATGCGCTAAATGCCACCGGTATATGCTCGTCAAGCTCTGCTCATCGCCGATTTCAGGAGTGGCGGGATGCTGGAG
TATTTGAACGCTTCTGGCAAAACGGGTTGCTTGCTTGCGAACAGTTGGACGCTATTGACTGGTCGTGGCTGTCGATGGATGGTTGTATGACCAAATCCCC
CCTGGCAGGCTCAAAAAAACAGGCAAGAATCCAACAGACCGGGGGGAAACAGGGCGTAAAGCGCAGTCTGATGACTGACGGGAACGGGCTTCCGCTTGCA
CTGGTTGTCGCTGGAGCAAATACGCACGACATAAAGCTGGCGGATACGCTCGATGCCCTCCAGACGGGCAGACCATGCAAGAGGCTCCGGTTGTGCATGG
ACAAAGGGTATGAAGCGGAATGGTTGGGATCGTATCTGAGAAGTCGTCGCGATGAACCTCATATCCAGTCACGGAAGGATGAGTCAGAAGCCATCAAAAA
CACGGATTTTAAGGCTCACCGCTGGGTTGTAGAGAGAACACACAGTTGGATGAATCGCTACCGTCGTGTCCTGACTCGTTGGGAGAAGAAGGTCGAGAAT
GATGAGGCGATGCTGCATTTTGCCTGTGGTATCATTGTCTGGAACAAAACCCTATTGGGATAGGTTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
804 bp267 aa60863+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTGNKWQISDGLWEKMAPLIPEHKTHHPLGTHRKRVDNRAAMNAIFFVLRTGCQWNALNATGICSSSSAHRRFQEWRDAGVFERFWQNGLLACEQLDAID
WSWLSMDGCMTKSPLAGSKKQARIQQTGGKQGVKRSLMTDGNGLPLALVVAGANTHDIKLADTLDALQTGRPCKRLRLCMDKGYEAEWLGSYLRSRRDEP
HIQSRKDESEAIKNTDFKAHRWVVERTHSWMNRYRRVLTRWEKKVENDEAMLHFACGIIVWNKTLLG

 

Blast result :
Comments
ISPrst2 is 68% aa similar to ISAzo38.
References
1] ISfinder annotation (2010)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2008) Direct submission GenBank.