ISPrst2
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABJD02000085 | ND | Providencia stuartii | Providencia stuartii ATCC 25827 |
DNA section
IS Length : 867 bp
Ends
IR Length : 17/21
IRL : TAACCTATCCCAAAAGGAATTGTCAGATAATACATAATGATAATTTCTGA
IRR : GAACCTATCCCAATAGGGTTTTGTTCCAGACAATGATACCACAGGCAAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGATACCCTAA | TTAGTGTTGGG | 0 |
DNA sequence
TAACCTATCCCAAAAGGAATTGTCAGATAATACATAATGATAATTTCTGAGGGCGAAGCGTGACGGGCAACAAGTGGCAGATCAGTGATGGACTCTGGGA
GAAAATGGCCCCACTGATTCCGGAGCATAAAACTCACCATCCTCTGGGTACGCACCGCAAGCGGGTTGATAATCGCGCTGCAATGAACGCCATTTTCTTC
GTACTCAGGACGGGTTGCCAGTGGAATGCGCTAAATGCCACCGGTATATGCTCGTCAAGCTCTGCTCATCGCCGATTTCAGGAGTGGCGGGATGCTGGAG
TATTTGAACGCTTCTGGCAAAACGGGTTGCTTGCTTGCGAACAGTTGGACGCTATTGACTGGTCGTGGCTGTCGATGGATGGTTGTATGACCAAATCCCC
CCTGGCAGGCTCAAAAAAACAGGCAAGAATCCAACAGACCGGGGGGAAACAGGGCGTAAAGCGCAGTCTGATGACTGACGGGAACGGGCTTCCGCTTGCA
CTGGTTGTCGCTGGAGCAAATACGCACGACATAAAGCTGGCGGATACGCTCGATGCCCTCCAGACGGGCAGACCATGCAAGAGGCTCCGGTTGTGCATGG
ACAAAGGGTATGAAGCGGAATGGTTGGGATCGTATCTGAGAAGTCGTCGCGATGAACCTCATATCCAGTCACGGAAGGATGAGTCAGAAGCCATCAAAAA
CACGGATTTTAAGGCTCACCGCTGGGTTGTAGAGAGAACACACAGTTGGATGAATCGCTACCGTCGTGTCCTGACTCGTTGGGAGAAGAAGGTCGAGAAT
GATGAGGCGATGCTGCATTTTGCCTGTGGTATCATTGTCTGGAACAAAACCCTATTGGGATAGGTTC
GAAAATGGCCCCACTGATTCCGGAGCATAAAACTCACCATCCTCTGGGTACGCACCGCAAGCGGGTTGATAATCGCGCTGCAATGAACGCCATTTTCTTC
GTACTCAGGACGGGTTGCCAGTGGAATGCGCTAAATGCCACCGGTATATGCTCGTCAAGCTCTGCTCATCGCCGATTTCAGGAGTGGCGGGATGCTGGAG
TATTTGAACGCTTCTGGCAAAACGGGTTGCTTGCTTGCGAACAGTTGGACGCTATTGACTGGTCGTGGCTGTCGATGGATGGTTGTATGACCAAATCCCC
CCTGGCAGGCTCAAAAAAACAGGCAAGAATCCAACAGACCGGGGGGAAACAGGGCGTAAAGCGCAGTCTGATGACTGACGGGAACGGGCTTCCGCTTGCA
CTGGTTGTCGCTGGAGCAAATACGCACGACATAAAGCTGGCGGATACGCTCGATGCCCTCCAGACGGGCAGACCATGCAAGAGGCTCCGGTTGTGCATGG
ACAAAGGGTATGAAGCGGAATGGTTGGGATCGTATCTGAGAAGTCGTCGCGATGAACCTCATATCCAGTCACGGAAGGATGAGTCAGAAGCCATCAAAAA
CACGGATTTTAAGGCTCACCGCTGGGTTGTAGAGAGAACACACAGTTGGATGAATCGCTACCGTCGTGTCCTGACTCGTTGGGAGAAGAAGGTCGAGAAT
GATGAGGCGATGCTGCATTTTGCCTGTGGTATCATTGTCTGGAACAAAACCCTATTGGGATAGGTTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
804 bp | 267 aa | 60 | 863 | + | No |
Chemistry : DDE
ORF sequence :
MTGNKWQISDGLWEKMAPLIPEHKTHHPLGTHRKRVDNRAAMNAIFFVLRTGCQWNALNATGICSSSSAHRRFQEWRDAGVFERFWQNGLLACEQLDAID
WSWLSMDGCMTKSPLAGSKKQARIQQTGGKQGVKRSLMTDGNGLPLALVVAGANTHDIKLADTLDALQTGRPCKRLRLCMDKGYEAEWLGSYLRSRRDEP
HIQSRKDESEAIKNTDFKAHRWVVERTHSWMNRYRRVLTRWEKKVENDEAMLHFACGIIVWNKTLLG
WSWLSMDGCMTKSPLAGSKKQARIQQTGGKQGVKRSLMTDGNGLPLALVVAGANTHDIKLADTLDALQTGRPCKRLRLCMDKGYEAEWLGSYLRSRRDEP
HIQSRKDESEAIKNTDFKAHRWVVERTHSWMNRYRRVLTRWEKKVENDEAMLHFACGIIVWNKTLLG
Blast result :
Comments
ISPrst2 is 68% aa similar to ISAzo38.
References
1] ISfinder annotation (2010)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2008) Direct submission GenBank.
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2008) Direct submission GenBank.