ISStau9
- Family IS5
- Group IS427
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_014623 | ND | Stigmatella aurantiaca | Stigmatella aurantiaca DW4/3-1 |
DNA section
IS Length : 899 bp
Ends
IR Length : 17
IRL : GAGACTATCTCAGTAGGGAAGAAAAGCCCCTACCTGTGAGGTTATCCAGG
IRR : GAGACTATCTCAGTAGGAAGTGGAACCAAGTGATGAGGCCCAGGGCCAGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGAAGCTAA | TTAGAGCGCG | 0 |
DNA sequence
GAGACTATCTCAGTAGGGAAGAAAAGCCCCTACCTGTGAGGTTATCCAGGTAGGAGGGAAAAGTGGAATGGGAGTAGCCAAGCACGACGATGGTTGAAGG
ATGACGGAGGAGGTGTGGGCCAAGCTGGAGCCCCTGTTGCCTCCTCGTCCCGAGCATCCGCTGGGGTGTCACAATCCACGAGTGCCTGACAGAAAGGCCA
TGGAAGCCATCCTGTTGGTGCTGCGCACGGGGATGCAGTGGCAGGCGCTCAAGGCCACCGGAATCTGCCACCCGTCCTCGGCCTACCGACGCTTCCGGGA
GTGGACCGAGGCCGGAGTGTTCCGAGAATTCTGGCGCTTGGGGCTCGTGGCCTATGAGCAGATGAGGGGCATTGAGTGGAAGTGGATGAGCCTGGACGGG
GCGATGACCAAAGCCCCGCTGGGTGGGCAGAAAACCGGTCCCAACCCAACGGACCGGGCCAAGAAAGGCACCAAGAGAAGCCTGCTGACGGATGGACGAG
GTACGCCGCTGGGCGTGGTGGTGGCTGCAGCCAACGTCAACGACCACAAGCTGGTGGAGGCCACGTTTGATTCAGTGCGGGTCAGAAGGCCGAAGCCTTC
CAAAGGCACTCCGCAGCATCTGTGCCTGGATGCAGGCTACGACTGCCAAGCGGTGCGTCAGTGGGGAGACAAGTTCCACCTTCAGCTGCACATTCGCCCA
CGTCGTCCCCCGGCGACGACTGCGAAGAAGAGCCGCCGGAAGAAGGCACGCCGTTGGGTGGTGGAACGCTCTCACTCGTGGATGAACCGCTTCCGCAGGC
TGCTGGTGCGCTGGGAGAAGCGCGAGGACACCTTTCTGGCCATGGTGCATCTGGCCCTGGGCCTCATCACTTGGTTCCACTTCCTACTGAGATAGTCTC
ATGACGGAGGAGGTGTGGGCCAAGCTGGAGCCCCTGTTGCCTCCTCGTCCCGAGCATCCGCTGGGGTGTCACAATCCACGAGTGCCTGACAGAAAGGCCA
TGGAAGCCATCCTGTTGGTGCTGCGCACGGGGATGCAGTGGCAGGCGCTCAAGGCCACCGGAATCTGCCACCCGTCCTCGGCCTACCGACGCTTCCGGGA
GTGGACCGAGGCCGGAGTGTTCCGAGAATTCTGGCGCTTGGGGCTCGTGGCCTATGAGCAGATGAGGGGCATTGAGTGGAAGTGGATGAGCCTGGACGGG
GCGATGACCAAAGCCCCGCTGGGTGGGCAGAAAACCGGTCCCAACCCAACGGACCGGGCCAAGAAAGGCACCAAGAGAAGCCTGCTGACGGATGGACGAG
GTACGCCGCTGGGCGTGGTGGTGGCTGCAGCCAACGTCAACGACCACAAGCTGGTGGAGGCCACGTTTGATTCAGTGCGGGTCAGAAGGCCGAAGCCTTC
CAAAGGCACTCCGCAGCATCTGTGCCTGGATGCAGGCTACGACTGCCAAGCGGTGCGTCAGTGGGGAGACAAGTTCCACCTTCAGCTGCACATTCGCCCA
CGTCGTCCCCCGGCGACGACTGCGAAGAAGAGCCGCCGGAAGAAGGCACGCCGTTGGGTGGTGGAACGCTCTCACTCGTGGATGAACCGCTTCCGCAGGC
TGCTGGTGCGCTGGGAGAAGCGCGAGGACACCTTTCTGGCCATGGTGCATCTGGCCCTGGGCCTCATCACTTGGTTCCACTTCCTACTGAGATAGTCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 795 bp | 264 aa | 101 | 895 | + | No |
Chemistry : DDE
ORF sequence :
MTEEVWAKLEPLLPPRPEHPLGCHNPRVPDRKAMEAILLVLRTGMQWQALKATGICHPSSAYRRFREWTEAGVFREFWRLGLVAYEQMRGIEWKWMSLDG
AMTKAPLGGQKTGPNPTDRAKKGTKRSLLTDGRGTPLGVVVAAANVNDHKLVEATFDSVRVRRPKPSKGTPQHLCLDAGYDCQAVRQWGDKFHLQLHIRP
RRPPATTAKKSRRKKARRWVVERSHSWMNRFRRLLVRWEKREDTFLAMVHLALGLITWFHFLLR
AMTKAPLGGQKTGPNPTDRAKKGTKRSLLTDGRGTPLGVVVAAANVNDHKLVEATFDSVRVRRPKPSKGTPQHLCLDAGYDCQAVRQWGDKFHLQLHIRP
RRPPATTAKKSRRKKARRWVVERSHSWMNRFRRLLVRWEKREDTFLAMVHLALGLITWFHFLLR
Blast result :
Comments
ISStau9 is 72% aa similar to ISAzo38.
References
1] ISfinder annotation (2010)
2] Huntley,S., Hamann,N., Wegener-Feldbruegge,S., Treuner-Lange,A., Kube,M., Reinhardt,R., Klages,S., Mueller,R., Ronning,C.M., Nierman,W.C. and Sogaard-Andersen,L. (2010) Direct submission GenBank.
2] Huntley,S., Hamann,N., Wegener-Feldbruegge,S., Treuner-Lange,A., Kube,M., Reinhardt,R., Klages,S., Mueller,R., Ronning,C.M., Nierman,W.C. and Sogaard-Andersen,L. (2010) Direct submission GenBank.