ISMru1

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_013790 ND Methanobrevibacter ruminantium
Methanobrevibacter ruminantium M1
DNA section
IS Length : 1252 bp

Ends


IR Length : 13/16

IRL : GGGGCCTGAATTTTTTTATGTATGAAATCGTTCAGATTTTCTATATTTTT
IRR : GGGGCCTGACGATTTTAGTTTTCAGATAATTGTTGTATGGCCGTTTTTGA

Insertion site


Left flankDirect repeatRight flankDR Length
AAAAGAAATTTAAAGAGTTTAT2
ATATGCTATTTAAATTATTTTT2
AAATTATATTTAAATAATTATA2
TAAATCTCTTTAAATAATTGTC2

DNA sequence

GGGGCCTGAATTTTTTTATGTATGAAATCGTTCAGATTTTCTATATTTTTATTCATTACCCTATAAAAATGTATTTATTTCTAAAAATACAATTGTATTA
TTAGTTATATAAAAAAATAGGTCTTTAATATCGTTAAATTTAAATAATATGCTTTACAAATATATTATTGGCGATAATAATGAAGCATAGATTAAATTTA
GATAATAAAGACCCAAATTATATTTTGTTGAAAGAAATATTTAAAATTATGGATTCTAGAAAATCCAAAAGTATATTAGCATCCTATGGATTTAAAAACT
TAAATAGAACAATATTTACTTTTAAAATTATATTTATAAGTATGTTCTTTGGAATTGACATTCCATTCATTTTAAACGAGCTTAAATCCAAAAAAGAACT
TCGCAAATACTTTAATATTTCTGAAGTTTTGACTGCAGATCAAGTTTATAAAATTTTTTCAGAAATAAACTCTGAAAAACTTATAAAATGTTTAAACAGA
ATCTTAAACTCAAGGAATATGGTTAAAAGAAGAGGAAAAAAGACTTTTATTGTTGATGCGACCCCAGTGGACGTAGATATTAATTTCCACAGAAATAAAA
AGACTAAAGAACATCTGGAAAAAATTAATCTCAAATGGAGTTATTCATCCTCTAAAGGTTATTATATTGGATTTAAAGCAACTGTTGTATTAGATTATGA
TTCTATGAATCCTGTTTGTATTTTAGTCCACTCTGGAGCTCCAAACGATGCAAAACTTTTCGAAGAAATTTTAGAAAACCTTCAAAAAAGACGAATAATC
AGAAAAGGAGACACATTAATCTTTGATAAAGGATATTACAGCTATAAAAACTACCAAATCGGAATCAGCAAATACAAAATCATTCCTTTCATTTTTCCAA
AAGAAAAATTCAGCAGAACCCGATTGGATGACATTTTAACTTATCCACTAGCCGTATTTAACAAAACAAAGAGAATAATGAAAGAAAAAAGATTATACAA
CAGTTTAAAAATGGAATTAATGAAAAAAATAGATTCATGGGAAAAATTTAAACCAATAAGGGGCAAAATAGAAGATTTTTTCAAATTATTAAAACAAGGC
TTGAATATGAGAGAAATCCACAAATATACTCCAAAATCAGTAGAAAAAACCGTTTATCTAAATGTATTTTTAGGAGCACTGATTATATCACAAGGATTTT
ACTCAAAAACGGCCATACAACAATTATCTGAAAACTAAAATCGTCAGGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1059 bp352 aa1801238+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKHRLNLDNKDPNYILLKEIFKIMDSRKSKSILASYGFKNLNRTIFTFKIIFISMFFGIDIPFILNELKSKKELRKYFNISEVLTADQVYKIFSEINSEK
LIKCLNRILNSRNMVKRRGKKTFIVDATPVDVDINFHRNKKTKEHLEKINLKWSYSSSKGYYIGFKATVVLDYDSMNPVCILVHSGAPNDAKLFEEILEN
LQKRRIIRKGDTLIFDKGYYSYKNYQIGISKYKIIPFIFPKEKFSRTRLDDILTYPLAVFNKTKRIMKEKRLYNSLKMELMKKIDSWEKFKPIRGKIEDF
FKLLKQGLNMREIHKYTPKSVEKTVYLNVFLGALIISQGFYSKTAIQQLSEN

 

Blast result :
Comments
ISMru1 is 58% aa similar to ISMba15.
References
1] ISfinder annotation (2010)
2] Leahy,S.C., Kelly,W.J., Altermann,E., Ronimus,R.S., Yeoman,C.J., Pacheco,D.M., Li,D., Kong,Z., McTavish,S., Sang,C., Lambie,S.C., Janssen,P.H., Dey,D. and Attwood,G.T. (2010) PLoS ONE 5 (1), E8926