ISArch21
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR937010 | ND | uncultured archaeon | uncultured archaeon ANME-1 uncultured archaeon fos0114d2+13a9 |
DNA section
IS Length : 1259 bp
Ends
IR Length : 12
IRL : TAACCCCCTCCACCAGCCACAGATAAAATATCACCATATCATTCCCAAAT
IRR : TAACCCCCTCCAAATCTTACCACTCAGCGAGCATCTGTAATTGCTTTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGAACAGAT | AAAGGTTT | ATTTCGCATG | 8 |
ATGAACAGAT | AAAGGTTT | TATTTCGCAT | 8 |
TCTTCTACAT | AATATTTT | ACAACTCGCC | 8 |
DNA sequence
TAACCCCCTCCACCAGCCACAGATAAAATATCACCATATCATTCCCAAATCACTCAAAACGGCACTTTACCCGCCAGCCATATAAAACGACAGATTTTTA
ATGTGTACAATTGAAAATAAACCGATAAAAACCGAAAACTTTATAAACCGAAGATTTTAATAATTCATAGAGGTGATTAAAATGAAAACACCGCTGATAC
CAGAAGAAGGGGATCCCAGGTGGGAGTTTGTTGGAAATGTGCTCAGGATATTCGACAAAAGAAAGGCAAGGCAAATAGTGTCTAAACATGGAATAAAGCC
GCTAAGTGATTCTATAGTGATGTTGAAGATTGTGTTACTTGCAATGTGCTTTGAAACGGATATAACCTTTGTAATAAGCGAATTAAGGGGTAAAGCATCG
TTAAGGGAGTTTACAAGCGTGTACGATGTTCCAGATGCAGAAGATATTTACAGAATTCTAAGCAGGTTTACACTCGATCAGTTTATGAATATGGTGTTAA
GGATCGTAAACACCGTTTGTGGAAAGCGAAAGATGGGAAAAACGATAATAATTGGAGATACTACCAATTTGACGGTGGATTTAAATTGGTTAAGAAAGAA
GTATAAGAAAGAAGATTTAAAAGATACGGACTACAAATGGGCATATTCCAAGTCTAAAGGCTATTATATCGGTATGAAACTCGTTTTAGCTATTGAATAC
CCCTCTTTAAAGCCGTTGGCCTTTCTTGTCTTCCCTGGTGGTCCCAGCGACTCAAAAATCTTTGATAAAATCGTGGCTGAGTTAATGAGACGTAGAATAT
TAAGAAAAGGGGATATGTTCGTATTAGACAAAGGATTTTACGCCTACAAGCATTACACAGATGGTTTACTCAAGTACGACATCATACCGTTGATATTTCC
GAGGAAGAATTTTAAAATCGAAAAGGTGTTGAATAGTATTCAGCTCATCTTAGACTTCTTTTGCGACAAGGCGGACCGTATAAAGATGAAAATACGTAAT
TTGAAAGCTATTTTGAGCGAGTTCAAGCAAAATATCCTTAATTGGAAGGAGTTTAAGCCAAAGAGGTCTTTGATAGAGGATGTAATCAAAGTAATGAAGA
AAACGTTCTCTTTAGATAAAATACACAGGTTTACACTCCCCTCAGTGACAAAACAAGCTTCTCTTGGTGTCGTTTTATTGGGCATTGCTATTTCGTTTGG
TTATAAGGAAAAAAAGCAATTACAGATGCTCGCTGAGTGGTAAGATTTGGAGGGGGTTA
ATGTGTACAATTGAAAATAAACCGATAAAAACCGAAAACTTTATAAACCGAAGATTTTAATAATTCATAGAGGTGATTAAAATGAAAACACCGCTGATAC
CAGAAGAAGGGGATCCCAGGTGGGAGTTTGTTGGAAATGTGCTCAGGATATTCGACAAAAGAAAGGCAAGGCAAATAGTGTCTAAACATGGAATAAAGCC
GCTAAGTGATTCTATAGTGATGTTGAAGATTGTGTTACTTGCAATGTGCTTTGAAACGGATATAACCTTTGTAATAAGCGAATTAAGGGGTAAAGCATCG
TTAAGGGAGTTTACAAGCGTGTACGATGTTCCAGATGCAGAAGATATTTACAGAATTCTAAGCAGGTTTACACTCGATCAGTTTATGAATATGGTGTTAA
GGATCGTAAACACCGTTTGTGGAAAGCGAAAGATGGGAAAAACGATAATAATTGGAGATACTACCAATTTGACGGTGGATTTAAATTGGTTAAGAAAGAA
GTATAAGAAAGAAGATTTAAAAGATACGGACTACAAATGGGCATATTCCAAGTCTAAAGGCTATTATATCGGTATGAAACTCGTTTTAGCTATTGAATAC
CCCTCTTTAAAGCCGTTGGCCTTTCTTGTCTTCCCTGGTGGTCCCAGCGACTCAAAAATCTTTGATAAAATCGTGGCTGAGTTAATGAGACGTAGAATAT
TAAGAAAAGGGGATATGTTCGTATTAGACAAAGGATTTTACGCCTACAAGCATTACACAGATGGTTTACTCAAGTACGACATCATACCGTTGATATTTCC
GAGGAAGAATTTTAAAATCGAAAAGGTGTTGAATAGTATTCAGCTCATCTTAGACTTCTTTTGCGACAAGGCGGACCGTATAAAGATGAAAATACGTAAT
TTGAAAGCTATTTTGAGCGAGTTCAAGCAAAATATCCTTAATTGGAAGGAGTTTAAGCCAAAGAGGTCTTTGATAGAGGATGTAATCAAAGTAATGAAGA
AAACGTTCTCTTTAGATAAAATACACAGGTTTACACTCCCCTCAGTGACAAAACAAGCTTCTCTTGGTGTCGTTTTATTGGGCATTGCTATTTCGTTTGG
TTATAAGGAAAAAAAGCAATTACAGATGCTCGCTGAGTGGTAAGATTTGGAGGGGGTTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1071 bp | 356 aa | 173 | 1243 | + | No |
Chemistry : DDE
ORF sequence :
MIKMKTPLIPEEGDPRWEFVGNVLRIFDKRKARQIVSKHGIKPLSDSIVMLKIVLLAMCFETDITFVISELRGKASLREFTSVYDVPDAEDIYRILSRFT
LDQFMNMVLRIVNTVCGKRKMGKTIIIGDTTNLTVDLNWLRKKYKKEDLKDTDYKWAYSKSKGYYIGMKLVLAIEYPSLKPLAFLVFPGGPSDSKIFDKI
VAELMRRRILRKGDMFVLDKGFYAYKHYTDGLLKYDIIPLIFPRKNFKIEKVLNSIQLILDFFCDKADRIKMKIRNLKAILSEFKQNILNWKEFKPKRSL
IEDVIKVMKKTFSLDKIHRFTLPSVTKQASLGVVLLGIAISFGYKEKKQLQMLAEW
LDQFMNMVLRIVNTVCGKRKMGKTIIIGDTTNLTVDLNWLRKKYKKEDLKDTDYKWAYSKSKGYYIGMKLVLAIEYPSLKPLAFLVFPGGPSDSKIFDKI
VAELMRRRILRKGDMFVLDKGFYAYKHYTDGLLKYDIIPLIFPRKNFKIEKVLNSIQLILDFFCDKADRIKMKIRNLKAILSEFKQNILNWKEFKPKRSL
IEDVIKVMKKTFSLDKIHRFTLPSVTKQASLGVVLLGIAISFGYKEKKQLQMLAEW
Blast result :
Comments
ISArch21 is 65% aa similar to ISMba15.
References
1] ISfinder annotation (2010)
2] Meyerdierks,A., Kube,M., Lombardot,T., Knittel,K., Bauer,M., Glockner,F.O., Reinhardt,R. and Amann,R. (2005) Environ. Microbiol. 7 (12), 1937-1951
3] Meyerdierks,A., Kube,M., Kostadinov,I., Teeling,H., Glockner,F.O., Reinhardt,R. and Amann,R. (2009) Environ. Microbiol. in press.
2] Meyerdierks,A., Kube,M., Lombardot,T., Knittel,K., Bauer,M., Glockner,F.O., Reinhardt,R. and Amann,R. (2005) Environ. Microbiol. 7 (12), 1937-1951
3] Meyerdierks,A., Kube,M., Kostadinov,I., Teeling,H., Glockner,F.O., Reinhardt,R. and Amann,R. (2009) Environ. Microbiol. in press.