ISArch21

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR937010 ND uncultured archaeon
uncultured archaeon ANME-1
uncultured archaeon fos0114d2+13a9
DNA section
IS Length : 1259 bp

Ends


IR Length : 12

IRL : TAACCCCCTCCACCAGCCACAGATAAAATATCACCATATCATTCCCAAAT
IRR : TAACCCCCTCCAAATCTTACCACTCAGCGAGCATCTGTAATTGCTTTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
ATGAACAGATAAAGGTTTATTTCGCATG8
ATGAACAGATAAAGGTTTTATTTCGCAT8
TCTTCTACATAATATTTTACAACTCGCC8

DNA sequence

TAACCCCCTCCACCAGCCACAGATAAAATATCACCATATCATTCCCAAATCACTCAAAACGGCACTTTACCCGCCAGCCATATAAAACGACAGATTTTTA
ATGTGTACAATTGAAAATAAACCGATAAAAACCGAAAACTTTATAAACCGAAGATTTTAATAATTCATAGAGGTGATTAAAATGAAAACACCGCTGATAC
CAGAAGAAGGGGATCCCAGGTGGGAGTTTGTTGGAAATGTGCTCAGGATATTCGACAAAAGAAAGGCAAGGCAAATAGTGTCTAAACATGGAATAAAGCC
GCTAAGTGATTCTATAGTGATGTTGAAGATTGTGTTACTTGCAATGTGCTTTGAAACGGATATAACCTTTGTAATAAGCGAATTAAGGGGTAAAGCATCG
TTAAGGGAGTTTACAAGCGTGTACGATGTTCCAGATGCAGAAGATATTTACAGAATTCTAAGCAGGTTTACACTCGATCAGTTTATGAATATGGTGTTAA
GGATCGTAAACACCGTTTGTGGAAAGCGAAAGATGGGAAAAACGATAATAATTGGAGATACTACCAATTTGACGGTGGATTTAAATTGGTTAAGAAAGAA
GTATAAGAAAGAAGATTTAAAAGATACGGACTACAAATGGGCATATTCCAAGTCTAAAGGCTATTATATCGGTATGAAACTCGTTTTAGCTATTGAATAC
CCCTCTTTAAAGCCGTTGGCCTTTCTTGTCTTCCCTGGTGGTCCCAGCGACTCAAAAATCTTTGATAAAATCGTGGCTGAGTTAATGAGACGTAGAATAT
TAAGAAAAGGGGATATGTTCGTATTAGACAAAGGATTTTACGCCTACAAGCATTACACAGATGGTTTACTCAAGTACGACATCATACCGTTGATATTTCC
GAGGAAGAATTTTAAAATCGAAAAGGTGTTGAATAGTATTCAGCTCATCTTAGACTTCTTTTGCGACAAGGCGGACCGTATAAAGATGAAAATACGTAAT
TTGAAAGCTATTTTGAGCGAGTTCAAGCAAAATATCCTTAATTGGAAGGAGTTTAAGCCAAAGAGGTCTTTGATAGAGGATGTAATCAAAGTAATGAAGA
AAACGTTCTCTTTAGATAAAATACACAGGTTTACACTCCCCTCAGTGACAAAACAAGCTTCTCTTGGTGTCGTTTTATTGGGCATTGCTATTTCGTTTGG
TTATAAGGAAAAAAAGCAATTACAGATGCTCGCTGAGTGGTAAGATTTGGAGGGGGTTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1071 bp356 aa1731243+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIKMKTPLIPEEGDPRWEFVGNVLRIFDKRKARQIVSKHGIKPLSDSIVMLKIVLLAMCFETDITFVISELRGKASLREFTSVYDVPDAEDIYRILSRFT
LDQFMNMVLRIVNTVCGKRKMGKTIIIGDTTNLTVDLNWLRKKYKKEDLKDTDYKWAYSKSKGYYIGMKLVLAIEYPSLKPLAFLVFPGGPSDSKIFDKI
VAELMRRRILRKGDMFVLDKGFYAYKHYTDGLLKYDIIPLIFPRKNFKIEKVLNSIQLILDFFCDKADRIKMKIRNLKAILSEFKQNILNWKEFKPKRSL
IEDVIKVMKKTFSLDKIHRFTLPSVTKQASLGVVLLGIAISFGYKEKKQLQMLAEW

 

Blast result :
Comments
ISArch21 is 65% aa similar to ISMba15.
References
1] ISfinder annotation (2010)
2] Meyerdierks,A., Kube,M., Lombardot,T., Knittel,K., Bauer,M., Glockner,F.O., Reinhardt,R. and Amann,R. (2005) Environ. Microbiol. 7 (12), 1937-1951
3] Meyerdierks,A., Kube,M., Kostadinov,I., Teeling,H., Glockner,F.O., Reinhardt,R. and Amann,R. (2009) Environ. Microbiol. in press.