ISDith1
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011297 | ND | Dictyoglomus thermophilum | Dictyoglomus thermophilum H-6-12 |
DNA section
IS Length : 957 bp
Ends
IR Length : 14/15
IRL : GAGGCTGTTCAAAAAATGAAGGGAGATGAGGAGAAAAGAGGCTAGGAGAA
IRR : GAGAGTGTTCAAAAATTCACTTCTTCCTTATACTCCTAACAATACTAAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGGTTTACCTTTTTT | GAAAAGCAATTGAAAAT | 0 |
DNA sequence
GAGGCTGTTCAAAAAATGAAGGGAGATGAGGAGAAAAGAGGCTAGGAGAAGTGTTATTTAGTGCAAGTGAAGAAGAGGATAAAGGATAAGGGTAAGGTAG
ATTTTATTATAGATTTTAGGAGGATTTATAGGAATATTAAGGAGATGATAAAGGTTAAGGAGGAAAGGAGAAGAGGTAGGAAGAAGAAATATGATGATGG
ATTGATAATATTAGCGGGTATGTTAATGATAGGGTGTGGATTTACATATAGGGAGGTTGCTAGGTTGATAAATAGGGTATTAGGGGTTAAGATACACATA
TCGAATATATATTATAGGTTGAAGGAGATGGAGGGATTAGAGGGGGTAGTTAATAAGGTGATAAGGAGTATAAATGTAGAGAAGGTGAAGGGTAGATGTA
GGGGTTTGTTAGTAGATGGTGCGGGATTTGGGTATAATTTTAAGATAAAGCAGAGGTTATATTTTGGTAGGGAGATAAGGGAGAAGAGGGATCATGTGAA
ATGTGAATTGTTAGTGTTAGTAGATGAGAGGGGTAAGAGTTATATAGTGGGTGTATTTGTGGATGATGGGTATAAGGACGAGAGGAAGATACTGAAGAGT
AAGTTTGAGGAGGTTAAGAAGCTAAAGGAGGAGGTGGATTTTAGGAAGGTTTATGGGGATAGGTTATACAACAGGGATATAGAGTTATTGAGGGAATTTG
AGAAGGAGGGGGTTGAGATGATATTGCCGGTAGAGGATGGGATACATAACAAGGTTAAGAGTGAGGAGAGGAAGAGGGTTAAGGAGTCGTATAATCGGAA
GAGGCATGCGTACAATAGGAATAGGTACAAGATAGAGCAAAAGATAGGGAACATAAAGAGGTTTATGGGTACATATTTGAATACAAAGGATAAAGAGGTA
AGTAAGAATTTAGTATTGTTAGGAGTATAAGGAAGAAGTGAATTTTTGAACACTCTC
ATTTTATTATAGATTTTAGGAGGATTTATAGGAATATTAAGGAGATGATAAAGGTTAAGGAGGAAAGGAGAAGAGGTAGGAAGAAGAAATATGATGATGG
ATTGATAATATTAGCGGGTATGTTAATGATAGGGTGTGGATTTACATATAGGGAGGTTGCTAGGTTGATAAATAGGGTATTAGGGGTTAAGATACACATA
TCGAATATATATTATAGGTTGAAGGAGATGGAGGGATTAGAGGGGGTAGTTAATAAGGTGATAAGGAGTATAAATGTAGAGAAGGTGAAGGGTAGATGTA
GGGGTTTGTTAGTAGATGGTGCGGGATTTGGGTATAATTTTAAGATAAAGCAGAGGTTATATTTTGGTAGGGAGATAAGGGAGAAGAGGGATCATGTGAA
ATGTGAATTGTTAGTGTTAGTAGATGAGAGGGGTAAGAGTTATATAGTGGGTGTATTTGTGGATGATGGGTATAAGGACGAGAGGAAGATACTGAAGAGT
AAGTTTGAGGAGGTTAAGAAGCTAAAGGAGGAGGTGGATTTTAGGAAGGTTTATGGGGATAGGTTATACAACAGGGATATAGAGTTATTGAGGGAATTTG
AGAAGGAGGGGGTTGAGATGATATTGCCGGTAGAGGATGGGATACATAACAAGGTTAAGAGTGAGGAGAGGAAGAGGGTTAAGGAGTCGTATAATCGGAA
GAGGCATGCGTACAATAGGAATAGGTACAAGATAGAGCAAAAGATAGGGAACATAAAGAGGTTTATGGGTACATATTTGAATACAAAGGATAAAGAGGTA
AGTAAGAATTTAGTATTGTTAGGAGTATAAGGAAGAAGTGAATTTTTGAACACTCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
870 bp | 289 aa | 61 | 930 | + | No |
Chemistry : DDE
ORF sequence :
MQVKKRIKDKGKVDFIIDFRRIYRNIKEMIKVKEERRRGRKKKYDDGLIILAGMLMIGCGFTYREVARLINRVLGVKIHISNIYYRLKEMEGLEGVVNKV
IRSINVEKVKGRCRGLLVDGAGFGYNFKIKQRLYFGREIREKRDHVKCELLVLVDERGKSYIVGVFVDDGYKDERKILKSKFEEVKKLKEEVDFRKVYGD
RLYNRDIELLREFEKEGVEMILPVEDGIHNKVKSEERKRVKESYNRKRHAYNRNRYKIEQKIGNIKRFMGTYLNTKDKEVSKNLVLLGV
IRSINVEKVKGRCRGLLVDGAGFGYNFKIKQRLYFGREIREKRDHVKCELLVLVDERGKSYIVGVFVDDGYKDERKILKSKFEEVKKLKEEVDFRKVYGD
RLYNRDIELLREFEKEGVEMILPVEDGIHNKVKSEERKRVKESYNRKRHAYNRNRYKIEQKIGNIKRFMGTYLNTKDKEVSKNLVLLGV
Blast result :
Comments
ISDith1 is 50% aa similar to ISAae1.
References
1] ISfinder annotation (2010)
2] Dodson,R.J., Durkin,A.S., Wu,M., Eisen,J. and Sutton,G. (2008) Direct submission GenBank.
2] Dodson,R.J., Durkin,A.S., Wu,M., Eisen,J. and Sutton,G. (2008) Direct submission GenBank.