ISDith1

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011297 ND Dictyoglomus thermophilum
Dictyoglomus thermophilum H-6-12
DNA section
IS Length : 957 bp

Ends


IR Length : 14/15

IRL : GAGGCTGTTCAAAAAATGAAGGGAGATGAGGAGAAAAGAGGCTAGGAGAA
IRR : GAGAGTGTTCAAAAATTCACTTCTTCCTTATACTCCTAACAATACTAAAT

Insertion site


Left flankDirect repeatRight flankDR Length
TTGGTTTACCTTTTTTGAAAAGCAATTGAAAAT0

DNA sequence

GAGGCTGTTCAAAAAATGAAGGGAGATGAGGAGAAAAGAGGCTAGGAGAAGTGTTATTTAGTGCAAGTGAAGAAGAGGATAAAGGATAAGGGTAAGGTAG
ATTTTATTATAGATTTTAGGAGGATTTATAGGAATATTAAGGAGATGATAAAGGTTAAGGAGGAAAGGAGAAGAGGTAGGAAGAAGAAATATGATGATGG
ATTGATAATATTAGCGGGTATGTTAATGATAGGGTGTGGATTTACATATAGGGAGGTTGCTAGGTTGATAAATAGGGTATTAGGGGTTAAGATACACATA
TCGAATATATATTATAGGTTGAAGGAGATGGAGGGATTAGAGGGGGTAGTTAATAAGGTGATAAGGAGTATAAATGTAGAGAAGGTGAAGGGTAGATGTA
GGGGTTTGTTAGTAGATGGTGCGGGATTTGGGTATAATTTTAAGATAAAGCAGAGGTTATATTTTGGTAGGGAGATAAGGGAGAAGAGGGATCATGTGAA
ATGTGAATTGTTAGTGTTAGTAGATGAGAGGGGTAAGAGTTATATAGTGGGTGTATTTGTGGATGATGGGTATAAGGACGAGAGGAAGATACTGAAGAGT
AAGTTTGAGGAGGTTAAGAAGCTAAAGGAGGAGGTGGATTTTAGGAAGGTTTATGGGGATAGGTTATACAACAGGGATATAGAGTTATTGAGGGAATTTG
AGAAGGAGGGGGTTGAGATGATATTGCCGGTAGAGGATGGGATACATAACAAGGTTAAGAGTGAGGAGAGGAAGAGGGTTAAGGAGTCGTATAATCGGAA
GAGGCATGCGTACAATAGGAATAGGTACAAGATAGAGCAAAAGATAGGGAACATAAAGAGGTTTATGGGTACATATTTGAATACAAAGGATAAAGAGGTA
AGTAAGAATTTAGTATTGTTAGGAGTATAAGGAAGAAGTGAATTTTTGAACACTCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
870 bp289 aa61930+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQVKKRIKDKGKVDFIIDFRRIYRNIKEMIKVKEERRRGRKKKYDDGLIILAGMLMIGCGFTYREVARLINRVLGVKIHISNIYYRLKEMEGLEGVVNKV
IRSINVEKVKGRCRGLLVDGAGFGYNFKIKQRLYFGREIREKRDHVKCELLVLVDERGKSYIVGVFVDDGYKDERKILKSKFEEVKKLKEEVDFRKVYGD
RLYNRDIELLREFEKEGVEMILPVEDGIHNKVKSEERKRVKESYNRKRHAYNRNRYKIEQKIGNIKRFMGTYLNTKDKEVSKNLVLLGV

 

Blast result :
Comments
ISDith1 is 50% aa similar to ISAae1.
References
1] ISfinder annotation (2010)
2] Dodson,R.J., Durkin,A.S., Wu,M., Eisen,J. and Sutton,G. (2008) Direct submission GenBank.