ISSulsp1
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010730 | ND | Sulfurihydrogenibium sp. | Sulfurihydrogenibium sp. YO3AOP1 |
DNA section
IS Length : 993 bp
Ends
IR Length : 15/16
IRL : GAGCCTGTTCCAAAATTAATTTCTCAGTTAAAATTAAATACACAAAATCA
IRR : GAGCCCTGTTCCAAAAATCAAAAAAAACTTCTTCTAAAAATTAAGACTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTGTCAAGGGGTTGG | AGGGGATATAAGTGGTACCT | 0 |
DNA sequence
GAGCCTGTTCCAAAATTAATTTCTCAGTTAAAATTAAATACACAAAATCAAAAAATAAAATGTTTGCATGAGAAAAACAGGAATATCCTTTAAACAAATC
TATAAACTTACAAAAAGATTTTTTAAAAAGATTAAACATAAGGAAAAGAAAAATAGTCAAAGAGGTAGACCAAGAAAGTACAAAGATGAGTTCATAATAG
CTATATTTCTATACCAAACACTAAAACAATATTCTTATAGAGAAGTTCTTCAAGAGCTTAAATATTTTGGCTTTAAAACCCCTTCTCTAAATGACTATCA
TTATAGGATTAAACAATTTAATAAAAACACTTTAAAATTATTGCTGGAAAAAACAGGACAGTATTTTATTGAAAAAATCAAAGATGAAATACAGTGCTAC
ATAGCAGATGCTACAGGTTTTGCCTATGGAGATATTTATAGCCTTAAATGGAGAAGAGGGATAGAGGTAAAACAGATAAAATCCCATATAAGACTTGAGG
TTATTATGGCAGTAGATAACGAAGATAAAGTGGTAATTTTGGGATGTGAAACAGGTAAAGCCTATGCAAGTGAGATAAAGATGTTAAATCAGATATTAGA
CAAAGTAGATTTTATCAAAGGACTACCTTTTATAGCTGATAAAGGTTATGATTCAATAAGTGTAATACAAAAAATCTTAGACATTGGACTTATTCCTGCT
ATAAAGATAAAGGAAACATTTAGAATAAAAATAAAGCATCCATTGAGACAGTTATCAAAGGAAAATTGGTTAAAGTATGGAAAGAAAAGATATAGAATAG
AATCTTTATTTGGTAATATAAAGAACAAAGCAAATTCAGTGTTTAGAGTTAAAAGAGAAGATATAGCTAAGAAGTTAGCTATTGCTTGGGCTATTCTTTG
GAATTTCTACATGATTTTAATTTATGTATTTTTGTTTATCCTATCAGTCTTAATTTTTAGAAGAAGTTTTTTTTGATTTTTGGAACAGGGCTC
TATAAACTTACAAAAAGATTTTTTAAAAAGATTAAACATAAGGAAAAGAAAAATAGTCAAAGAGGTAGACCAAGAAAGTACAAAGATGAGTTCATAATAG
CTATATTTCTATACCAAACACTAAAACAATATTCTTATAGAGAAGTTCTTCAAGAGCTTAAATATTTTGGCTTTAAAACCCCTTCTCTAAATGACTATCA
TTATAGGATTAAACAATTTAATAAAAACACTTTAAAATTATTGCTGGAAAAAACAGGACAGTATTTTATTGAAAAAATCAAAGATGAAATACAGTGCTAC
ATAGCAGATGCTACAGGTTTTGCCTATGGAGATATTTATAGCCTTAAATGGAGAAGAGGGATAGAGGTAAAACAGATAAAATCCCATATAAGACTTGAGG
TTATTATGGCAGTAGATAACGAAGATAAAGTGGTAATTTTGGGATGTGAAACAGGTAAAGCCTATGCAAGTGAGATAAAGATGTTAAATCAGATATTAGA
CAAAGTAGATTTTATCAAAGGACTACCTTTTATAGCTGATAAAGGTTATGATTCAATAAGTGTAATACAAAAAATCTTAGACATTGGACTTATTCCTGCT
ATAAAGATAAAGGAAACATTTAGAATAAAAATAAAGCATCCATTGAGACAGTTATCAAAGGAAAATTGGTTAAAGTATGGAAAGAAAAGATATAGAATAG
AATCTTTATTTGGTAATATAAAGAACAAAGCAAATTCAGTGTTTAGAGTTAAAAGAGAAGATATAGCTAAGAAGTTAGCTATTGCTTGGGCTATTCTTTG
GAATTTCTACATGATTTTAATTTATGTATTTTTGTTTATCCTATCAGTCTTAATTTTTAGAAGAAGTTTTTTTTGATTTTTGGAACAGGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
909 bp | 302 aa | 68 | 976 | + | No |
Chemistry : DDE
ORF sequence :
MRKTGISFKQIYKLTKRFFKKIKHKEKKNSQRGRPRKYKDEFIIAIFLYQTLKQYSYREVLQELKYFGFKTPSLNDYHYRIKQFNKNTLKLLLEKTGQYF
IEKIKDEIQCYIADATGFAYGDIYSLKWRRGIEVKQIKSHIRLEVIMAVDNEDKVVILGCETGKAYASEIKMLNQILDKVDFIKGLPFIADKGYDSISVI
QKILDIGLIPAIKIKETFRIKIKHPLRQLSKENWLKYGKKRYRIESLFGNIKNKANSVFRVKREDIAKKLAIAWAILWNFYMILIYVFLFILSVLIFRRS
FF
IEKIKDEIQCYIADATGFAYGDIYSLKWRRGIEVKQIKSHIRLEVIMAVDNEDKVVILGCETGKAYASEIKMLNQILDKVDFIKGLPFIADKGYDSISVI
QKILDIGLIPAIKIKETFRIKIKHPLRQLSKENWLKYGKKRYRIESLFGNIKNKANSVFRVKREDIAKKLAIAWAILWNFYMILIYVFLFILSVLIFRRS
FF
Blast result :
Comments
ISSulsp1 is 55% aa similar to ISAae1.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Reysenbach,A.-L., Mead,D. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Reysenbach,A.-L., Mead,D. and Richardson,P. (2008) Direct submission GenBank.