ISfinder Mirror Site

ISSulsp1

Family IS5
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_010730	ND	Sulfurihydrogenibium sp.	Sulfurihydrogenibium sp. YO3AOP1

DNA section

IS Length : 993 bp

Ends

IR Length : 15/16

IRL : GAGCCTGTTCCAAAATTAATTTCTCAGTTAAAATTAAATACACAAAATCA
IRR : GAGCCCTGTTCCAAAAATCAAAAAAAACTTCTTCTAAAAATTAAGACTGA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TATTGTCAAGGGGTTGG		AGGGGATATAAGTGGTACCT	0

DNA sequence

GAGCCTGTTCCAAAATTAATTTCTCAGTTAAAATTAAATACACAAAATCAAAAAATAAAATGTTTGCATGAGAAAAACAGGAATATCCTTTAAACAAATC
TATAAACTTACAAAAAGATTTTTTAAAAAGATTAAACATAAGGAAAAGAAAAATAGTCAAAGAGGTAGACCAAGAAAGTACAAAGATGAGTTCATAATAG
CTATATTTCTATACCAAACACTAAAACAATATTCTTATAGAGAAGTTCTTCAAGAGCTTAAATATTTTGGCTTTAAAACCCCTTCTCTAAATGACTATCA
TTATAGGATTAAACAATTTAATAAAAACACTTTAAAATTATTGCTGGAAAAAACAGGACAGTATTTTATTGAAAAAATCAAAGATGAAATACAGTGCTAC
ATAGCAGATGCTACAGGTTTTGCCTATGGAGATATTTATAGCCTTAAATGGAGAAGAGGGATAGAGGTAAAACAGATAAAATCCCATATAAGACTTGAGG
TTATTATGGCAGTAGATAACGAAGATAAAGTGGTAATTTTGGGATGTGAAACAGGTAAAGCCTATGCAAGTGAGATAAAGATGTTAAATCAGATATTAGA
CAAAGTAGATTTTATCAAAGGACTACCTTTTATAGCTGATAAAGGTTATGATTCAATAAGTGTAATACAAAAAATCTTAGACATTGGACTTATTCCTGCT
ATAAAGATAAAGGAAACATTTAGAATAAAAATAAAGCATCCATTGAGACAGTTATCAAAGGAAAATTGGTTAAAGTATGGAAAGAAAAGATATAGAATAG
AATCTTTATTTGGTAATATAAAGAACAAAGCAAATTCAGTGTTTAGAGTTAAAAGAGAAGATATAGCTAAGAAGTTAGCTATTGCTTGGGCTATTCTTTG
GAATTTCTACATGATTTTAATTTATGTATTTTTGTTTATCCTATCAGTCTTAATTTTTAGAAGAAGTTTTTTTTGATTTTTGGAACAGGGCTC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
909 bp	302 aa	68	976	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKTGISFKQIYKLTKRFFKKIKHKEKKNSQRGRPRKYKDEFIIAIFLYQTLKQYSYREVLQELKYFGFKTPSLNDYHYRIKQFNKNTLKLLLEKTGQYF
IEKIKDEIQCYIADATGFAYGDIYSLKWRRGIEVKQIKSHIRLEVIMAVDNEDKVVILGCETGKAYASEIKMLNQILDKVDFIKGLPFIADKGYDSISVI
QKILDIGLIPAIKIKETFRIKIKHPLRQLSKENWLKYGKKRYRIESLFGNIKNKANSVFRVKREDIAKKLAIAWAILWNFYMILIYVFLFILSVLIFRRS
FF

Blast result :

Comments

ISSulsp1 is 55% aa similar to ISAae1.

References

1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Reysenbach,A.-L., Mead,D. and Richardson,P. (2008) Direct submission GenBank.