ISRm33
- Family IS5
- Group IS903
Isoform Synonym(s) ISSmeSM11a-1
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_013545 | ND | Sinorhizobium meliloti | Sinorhizobium meliloti plasmid pSmeSM11a |
DNA section
IS Length : 1116 bp
Ends
IR Length : 18
IRL : GCGTTGGTGCATGGATCGTTTAGCGGTCGTGGTGTAGGCGATCGGCAACC
IRR : GCGTTGGTGCATGGATCGGGACTTGAGCGGATCTGGATCTGTGATGGGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGTTGAAGC | CGCTGACAAG | 0 |
DNA sequence
GCGTTGGTGCATGGATCGTTTAGCGGTCGTGGTGTAGGCGATCGGCAACCTCAATAACCGATCTGTGACCTTGATGCCTTTCAAACATAACGCCGCCCGC
CGCCATCGCATCGGCAGGATGAAATTCAAGGTGACGAACTGGCCGGAATATGAGGCGGGGTTACGGCGACGTGGCAGCTTGACCCTGTGGCTGACACCGG
AGGCGCTTGCCATGTGGCTTGCTCCACGCCGAACGACGCGTGGTGGCCAGCCTCGTTATTCCGATCTAGCCATCGAGACCGCCTTGACGCTGGGCCTGGT
GTTCGGCTTGCGGCTGCGTCAGGTCGAAGGATTATTAGGATCGGTGCTTCCCTTGATGGGCTTGGCGCTCGCTGTCCCCGATCACACCACCCTGAGCCGT
CGGGCGCGAACATGGCAATCGCCCAACAAGGCGCATGACCTCCAGGGTCGACCGGACGGGCCAGTGCATATTCTTGTCGACAGCACTGGACTGCAGGTCT
ACGGCGCGGGCCAAGGGTTGGAGGAGAAGCATGGCGCCAGATCCCGCCGTGGTTGGCGAAAGCTGCATGTGGCGCTGGATGCCGATAGCAGCGAGATCAT
TGCCCATACGATGACCGACCAGGACGCGGGCGACGCATCGCAGGTGGAGCCGTTGCTCAACCAGATCGATGGTCGGATCGGGCAGTTCACAGCCGACGGC
GCCTATGACGGGAAGCCCACCTACGACGCGGTCACCGACCACAGTGCGGCTGCCGTCATCGTCATTCCCCCGCGCGCCAACGCGATCGAACCAGCCGGCG
ATCAATCTCCCGGACAAAGGGATCAGCATATCGCTGCAATCAGCAGAGACGGGCGAATGAAATGGCAGGTCTCCACCGGCTACGGCAAGCGCTCGCTGGT
CGAGACTGCCATCGGCCGATACAAGTCCATCATCGGGCGGCGTCTGCGGGCTCGGTCGTTTCACGCTCAGCAGACGGAAGTGGCCATCGGCTGCGCCGCC
CTCAATCGTATGCTTGCATGCGCACGCCCTAAATCCATCCGCCGCAATGGACCGAACACATAGATAGCCCCATCACAGATCCAGATCCGCTCAAGTCCCG
ATCCATGCACCAACGC
CGCCATCGCATCGGCAGGATGAAATTCAAGGTGACGAACTGGCCGGAATATGAGGCGGGGTTACGGCGACGTGGCAGCTTGACCCTGTGGCTGACACCGG
AGGCGCTTGCCATGTGGCTTGCTCCACGCCGAACGACGCGTGGTGGCCAGCCTCGTTATTCCGATCTAGCCATCGAGACCGCCTTGACGCTGGGCCTGGT
GTTCGGCTTGCGGCTGCGTCAGGTCGAAGGATTATTAGGATCGGTGCTTCCCTTGATGGGCTTGGCGCTCGCTGTCCCCGATCACACCACCCTGAGCCGT
CGGGCGCGAACATGGCAATCGCCCAACAAGGCGCATGACCTCCAGGGTCGACCGGACGGGCCAGTGCATATTCTTGTCGACAGCACTGGACTGCAGGTCT
ACGGCGCGGGCCAAGGGTTGGAGGAGAAGCATGGCGCCAGATCCCGCCGTGGTTGGCGAAAGCTGCATGTGGCGCTGGATGCCGATAGCAGCGAGATCAT
TGCCCATACGATGACCGACCAGGACGCGGGCGACGCATCGCAGGTGGAGCCGTTGCTCAACCAGATCGATGGTCGGATCGGGCAGTTCACAGCCGACGGC
GCCTATGACGGGAAGCCCACCTACGACGCGGTCACCGACCACAGTGCGGCTGCCGTCATCGTCATTCCCCCGCGCGCCAACGCGATCGAACCAGCCGGCG
ATCAATCTCCCGGACAAAGGGATCAGCATATCGCTGCAATCAGCAGAGACGGGCGAATGAAATGGCAGGTCTCCACCGGCTACGGCAAGCGCTCGCTGGT
CGAGACTGCCATCGGCCGATACAAGTCCATCATCGGGCGGCGTCTGCGGGCTCGGTCGTTTCACGCTCAGCAGACGGAAGTGGCCATCGGCTGCGCCGCC
CTCAATCGTATGCTTGCATGCGCACGCCCTAAATCCATCCGCCGCAATGGACCGAACACATAGATAGCCCCATCACAGATCCAGATCCGCTCAAGTCCCG
ATCCATGCACCAACGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
990 bp | 329 aa | 74 | 1063 | + | No |
Chemistry : DDE
ORF sequence :
MPFKHNAARRHRIGRMKFKVTNWPEYEAGLRRRGSLTLWLTPEALAMWLAPRRTTRGGQPRYSDLAIETALTLGLVFGLRLRQVEGLLGSVLPLMGLALA
VPDHTTLSRRARTWQSPNKAHDLQGRPDGPVHILVDSTGLQVYGAGQGLEEKHGARSRRGWRKLHVALDADSSEIIAHTMTDQDAGDASQVEPLLNQIDG
RIGQFTADGAYDGKPTYDAVTDHSAAAVIVIPPRANAIEPAGDQSPGQRDQHIAAISRDGRMKWQVSTGYGKRSLVETAIGRYKSIIGRRLRARSFHAQQ
TEVAIGCAALNRMLACARPKSIRRNGPNT
VPDHTTLSRRARTWQSPNKAHDLQGRPDGPVHILVDSTGLQVYGAGQGLEEKHGARSRRGWRKLHVALDADSSEIIAHTMTDQDAGDASQVEPLLNQIDG
RIGQFTADGAYDGKPTYDAVTDHSAAAVIVIPPRANAIEPAGDQSPGQRDQHIAAISRDGRMKWQVSTGYGKRSLVETAIGRYKSIIGRRLRARSFHAQQ
TEVAIGCAALNRMLACARPKSIRRNGPNT
Blast result :
Comments
ISRm33 is 66% aa similar to ISAzba3. The sequence was renammed according to the IS nomenclature.
References
1] ISfinder submission (2010)
2] Stiens,M., Schneiker,S., Keller,M., Kuhn,S., Puhler,A. and Schluter,A. (2006) Appl. Environ. Microbiol. 72 (5), 3662-3672.
2] Stiens,M., Schneiker,S., Keller,M., Kuhn,S., Puhler,A. and Schluter,A. (2006) Appl. Environ. Microbiol. 72 (5), 3662-3672.