ISRm33

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s) ISSmeSM11a-1
Accession numberTranspositionOriginHost
NC_013545 ND Sinorhizobium meliloti
Sinorhizobium meliloti plasmid pSmeSM11a
DNA section
IS Length : 1116 bp

Ends


IR Length : 18

IRL : GCGTTGGTGCATGGATCGTTTAGCGGTCGTGGTGTAGGCGATCGGCAACC
IRR : GCGTTGGTGCATGGATCGGGACTTGAGCGGATCTGGATCTGTGATGGGGC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGTTGAAGCCGCTGACAAG0

DNA sequence

GCGTTGGTGCATGGATCGTTTAGCGGTCGTGGTGTAGGCGATCGGCAACCTCAATAACCGATCTGTGACCTTGATGCCTTTCAAACATAACGCCGCCCGC
CGCCATCGCATCGGCAGGATGAAATTCAAGGTGACGAACTGGCCGGAATATGAGGCGGGGTTACGGCGACGTGGCAGCTTGACCCTGTGGCTGACACCGG
AGGCGCTTGCCATGTGGCTTGCTCCACGCCGAACGACGCGTGGTGGCCAGCCTCGTTATTCCGATCTAGCCATCGAGACCGCCTTGACGCTGGGCCTGGT
GTTCGGCTTGCGGCTGCGTCAGGTCGAAGGATTATTAGGATCGGTGCTTCCCTTGATGGGCTTGGCGCTCGCTGTCCCCGATCACACCACCCTGAGCCGT
CGGGCGCGAACATGGCAATCGCCCAACAAGGCGCATGACCTCCAGGGTCGACCGGACGGGCCAGTGCATATTCTTGTCGACAGCACTGGACTGCAGGTCT
ACGGCGCGGGCCAAGGGTTGGAGGAGAAGCATGGCGCCAGATCCCGCCGTGGTTGGCGAAAGCTGCATGTGGCGCTGGATGCCGATAGCAGCGAGATCAT
TGCCCATACGATGACCGACCAGGACGCGGGCGACGCATCGCAGGTGGAGCCGTTGCTCAACCAGATCGATGGTCGGATCGGGCAGTTCACAGCCGACGGC
GCCTATGACGGGAAGCCCACCTACGACGCGGTCACCGACCACAGTGCGGCTGCCGTCATCGTCATTCCCCCGCGCGCCAACGCGATCGAACCAGCCGGCG
ATCAATCTCCCGGACAAAGGGATCAGCATATCGCTGCAATCAGCAGAGACGGGCGAATGAAATGGCAGGTCTCCACCGGCTACGGCAAGCGCTCGCTGGT
CGAGACTGCCATCGGCCGATACAAGTCCATCATCGGGCGGCGTCTGCGGGCTCGGTCGTTTCACGCTCAGCAGACGGAAGTGGCCATCGGCTGCGCCGCC
CTCAATCGTATGCTTGCATGCGCACGCCCTAAATCCATCCGCCGCAATGGACCGAACACATAGATAGCCCCATCACAGATCCAGATCCGCTCAAGTCCCG
ATCCATGCACCAACGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
990 bp329 aa741063+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPFKHNAARRHRIGRMKFKVTNWPEYEAGLRRRGSLTLWLTPEALAMWLAPRRTTRGGQPRYSDLAIETALTLGLVFGLRLRQVEGLLGSVLPLMGLALA
VPDHTTLSRRARTWQSPNKAHDLQGRPDGPVHILVDSTGLQVYGAGQGLEEKHGARSRRGWRKLHVALDADSSEIIAHTMTDQDAGDASQVEPLLNQIDG
RIGQFTADGAYDGKPTYDAVTDHSAAAVIVIPPRANAIEPAGDQSPGQRDQHIAAISRDGRMKWQVSTGYGKRSLVETAIGRYKSIIGRRLRARSFHAQQ
TEVAIGCAALNRMLACARPKSIRRNGPNT

 

Blast result :
Comments
ISRm33 is 66% aa similar to ISAzba3. The sequence was renammed according to the IS nomenclature.
References
1] ISfinder submission (2010)
2] Stiens,M., Schneiker,S., Keller,M., Kuhn,S., Puhler,A. and Schluter,A. (2006) Appl. Environ. Microbiol. 72 (5), 3662-3672.