ISPa35
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009739 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa plasmid pMATVIM-7 |
DNA section
IS Length : 1031 bp
Ends
IR Length : 15/21
IRL : GGCGTTGTTGCACAAACGCCCCCAGTCTGTAGGCTACCGTGCCCATGACG
IRR : GGCGCTGTTGCGCAATTGGCCTTCTGAGCGCAGCTACCCCTTTCCCCTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGCGACGACC | ATATTGAACT | 0 |
DNA sequence
GGCGTTGTTGCACAAACGCCCCCAGTCTGTAGGCTACCGTGCCCATGACGAAGCCTGCTCCCGCCCAATACCGTACCACCAACTGGAAAGACTACAACGC
TGCGCTCAAGGCTAGAGGCTCGCTCTCGGTCTGGCTGGATCGTGACATGCAATGGCACGGCCAGCCCACCGGTCGTCGCGGTCGATCACCGACGTTCAGC
GATGCCGCCATCCAGTTCTGCCTGACCATCAAGGGGCTGTTCGGCCTGCCGTTGCGCCAAGTCATCGGTTTCGTGCAGAGCCTGATGCATCTGGCGGGCC
TGGATTGGCCCGTGCCTGACTACAGCACGGTCTGCCGCCGCCAGAAAACGCTGACCGTGAACATACCCTATCGCCCCAGTCGTGGTGGCTTGCATCTGCT
GGTCGACAGCACCGGCGTGAAGATGCTGGGCGAAGGCGAATGGAAAACGAAGAAACATGGCTCGGAATACCGTCGGCAGTGGCGCAAGGTGCATCTGGGC
ATTGATGCCGAGACGCTGGAGATCCGGGCCATCGAGGTCACGGACAACCGCATCGGCGACGCGCCGATGCTGCCTGAGCTGCTGACGCAGATCCCGGCGA
CTGAAACCGTGGCAACGGTGAGCGGCGATGGTGCCTATGACACCAAGGCCTGCCATGCTGCGATTGCGGCACGAGGAGCTGCCGCCGTGATCCCGACCCG
CAAGAATGCGCAGACCTGGAAAGGGAGTAGCGCTGGCGTCGAAGCCCGCAACGAGACCTTGCGTTCAACCCGGTATCTGGGTCGGACGATCTGGAAGAAA
TGGAGCGGTTACCACCGGCGCAGCCTGGTGGAAACCAAGATGGGTTGCTTCAAGTTGCTGGGTGAGCGCGTCATGGCCAGAGACTTCGATCGCCAAGTGA
CAGAGCTTCAGGTACGTGCGGCAATCCTGAATCAGTTCACGCGACTGGGCACGCCACACACGATACGTGTGTCCTGAGCGAGCAGGGGAAAGGGGTAGCT
GCGCTCAGAAGGCCAATTGCGCAACAGCGCC
TGCGCTCAAGGCTAGAGGCTCGCTCTCGGTCTGGCTGGATCGTGACATGCAATGGCACGGCCAGCCCACCGGTCGTCGCGGTCGATCACCGACGTTCAGC
GATGCCGCCATCCAGTTCTGCCTGACCATCAAGGGGCTGTTCGGCCTGCCGTTGCGCCAAGTCATCGGTTTCGTGCAGAGCCTGATGCATCTGGCGGGCC
TGGATTGGCCCGTGCCTGACTACAGCACGGTCTGCCGCCGCCAGAAAACGCTGACCGTGAACATACCCTATCGCCCCAGTCGTGGTGGCTTGCATCTGCT
GGTCGACAGCACCGGCGTGAAGATGCTGGGCGAAGGCGAATGGAAAACGAAGAAACATGGCTCGGAATACCGTCGGCAGTGGCGCAAGGTGCATCTGGGC
ATTGATGCCGAGACGCTGGAGATCCGGGCCATCGAGGTCACGGACAACCGCATCGGCGACGCGCCGATGCTGCCTGAGCTGCTGACGCAGATCCCGGCGA
CTGAAACCGTGGCAACGGTGAGCGGCGATGGTGCCTATGACACCAAGGCCTGCCATGCTGCGATTGCGGCACGAGGAGCTGCCGCCGTGATCCCGACCCG
CAAGAATGCGCAGACCTGGAAAGGGAGTAGCGCTGGCGTCGAAGCCCGCAACGAGACCTTGCGTTCAACCCGGTATCTGGGTCGGACGATCTGGAAGAAA
TGGAGCGGTTACCACCGGCGCAGCCTGGTGGAAACCAAGATGGGTTGCTTCAAGTTGCTGGGTGAGCGCGTCATGGCCAGAGACTTCGATCGCCAAGTGA
CAGAGCTTCAGGTACGTGCGGCAATCCTGAATCAGTTCACGCGACTGGGCACGCCACACACGATACGTGTGTCCTGAGCGAGCAGGGGAAAGGGGTAGCT
GCGCTCAGAAGGCCAATTGCGCAACAGCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 45 | 977 | + | No |
Chemistry : DDE
ORF sequence :
MTKPAPAQYRTTNWKDYNAALKARGSLSVWLDRDMQWHGQPTGRRGRSPTFSDAAIQFCLTIKGLFGLPLRQVIGFVQSLMHLAGLDWPVPDYSTVCRRQ
KTLTVNIPYRPSRGGLHLLVDSTGVKMLGEGEWKTKKHGSEYRRQWRKVHLGIDAETLEIRAIEVTDNRIGDAPMLPELLTQIPATETVATVSGDGAYDT
KACHAAIAARGAAAVIPTRKNAQTWKGSSAGVEARNETLRSTRYLGRTIWKKWSGYHRRSLVETKMGCFKLLGERVMARDFDRQVTELQVRAAILNQFTR
LGTPHTIRVS
KTLTVNIPYRPSRGGLHLLVDSTGVKMLGEGEWKTKKHGSEYRRQWRKVHLGIDAETLEIRAIEVTDNRIGDAPMLPELLTQIPATETVATVSGDGAYDT
KACHAAIAARGAAAVIPTRKNAQTWKGSSAGVEARNETLRSTRYLGRTIWKKWSGYHRRSLVETKMGCFKLLGERVMARDFDRQVTELQVRAAILNQFTR
LGTPHTIRVS
Blast result :
Comments
ISPa35 is 85% aa similar to ISJsp2.
References
1] ISfinder annotation (2010)
2] Li,H., Toleman,M.A., Bennett,P.M., Jones,R.N. and Walsh,T.R (2008) Antimicrob. Agents Chemother. 52 (9), 3099-3105
3] Toleman,M.A. (2007) Direct submission GenBank.
2] Li,H., Toleman,M.A., Bennett,P.M., Jones,R.N. and Walsh,T.R (2008) Antimicrob. Agents Chemother. 52 (9), 3099-3105
3] Toleman,M.A. (2007) Direct submission GenBank.