ISPa35

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009739 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa plasmid pMATVIM-7
DNA section
IS Length : 1031 bp

Ends


IR Length : 15/21

IRL : GGCGTTGTTGCACAAACGCCCCCAGTCTGTAGGCTACCGTGCCCATGACG
IRR : GGCGCTGTTGCGCAATTGGCCTTCTGAGCGCAGCTACCCCTTTCCCCTGC

Insertion site


Left flankDirect repeatRight flankDR Length
GGGCGACGACCATATTGAACT0

DNA sequence

GGCGTTGTTGCACAAACGCCCCCAGTCTGTAGGCTACCGTGCCCATGACGAAGCCTGCTCCCGCCCAATACCGTACCACCAACTGGAAAGACTACAACGC
TGCGCTCAAGGCTAGAGGCTCGCTCTCGGTCTGGCTGGATCGTGACATGCAATGGCACGGCCAGCCCACCGGTCGTCGCGGTCGATCACCGACGTTCAGC
GATGCCGCCATCCAGTTCTGCCTGACCATCAAGGGGCTGTTCGGCCTGCCGTTGCGCCAAGTCATCGGTTTCGTGCAGAGCCTGATGCATCTGGCGGGCC
TGGATTGGCCCGTGCCTGACTACAGCACGGTCTGCCGCCGCCAGAAAACGCTGACCGTGAACATACCCTATCGCCCCAGTCGTGGTGGCTTGCATCTGCT
GGTCGACAGCACCGGCGTGAAGATGCTGGGCGAAGGCGAATGGAAAACGAAGAAACATGGCTCGGAATACCGTCGGCAGTGGCGCAAGGTGCATCTGGGC
ATTGATGCCGAGACGCTGGAGATCCGGGCCATCGAGGTCACGGACAACCGCATCGGCGACGCGCCGATGCTGCCTGAGCTGCTGACGCAGATCCCGGCGA
CTGAAACCGTGGCAACGGTGAGCGGCGATGGTGCCTATGACACCAAGGCCTGCCATGCTGCGATTGCGGCACGAGGAGCTGCCGCCGTGATCCCGACCCG
CAAGAATGCGCAGACCTGGAAAGGGAGTAGCGCTGGCGTCGAAGCCCGCAACGAGACCTTGCGTTCAACCCGGTATCTGGGTCGGACGATCTGGAAGAAA
TGGAGCGGTTACCACCGGCGCAGCCTGGTGGAAACCAAGATGGGTTGCTTCAAGTTGCTGGGTGAGCGCGTCATGGCCAGAGACTTCGATCGCCAAGTGA
CAGAGCTTCAGGTACGTGCGGCAATCCTGAATCAGTTCACGCGACTGGGCACGCCACACACGATACGTGTGTCCTGAGCGAGCAGGGGAAAGGGGTAGCT
GCGCTCAGAAGGCCAATTGCGCAACAGCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa45977+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTKPAPAQYRTTNWKDYNAALKARGSLSVWLDRDMQWHGQPTGRRGRSPTFSDAAIQFCLTIKGLFGLPLRQVIGFVQSLMHLAGLDWPVPDYSTVCRRQ
KTLTVNIPYRPSRGGLHLLVDSTGVKMLGEGEWKTKKHGSEYRRQWRKVHLGIDAETLEIRAIEVTDNRIGDAPMLPELLTQIPATETVATVSGDGAYDT
KACHAAIAARGAAAVIPTRKNAQTWKGSSAGVEARNETLRSTRYLGRTIWKKWSGYHRRSLVETKMGCFKLLGERVMARDFDRQVTELQVRAAILNQFTR
LGTPHTIRVS

 

Blast result :
Comments
ISPa35 is 85% aa similar to ISJsp2.
References
1] ISfinder annotation (2010)
2] Li,H., Toleman,M.A., Bennett,P.M., Jones,R.N. and Walsh,T.R (2008) Antimicrob. Agents Chemother. 52 (9), 3099-3105
3] Toleman,M.A. (2007) Direct submission GenBank.