ISCap2
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013194 | ND | Candidatus Accumulibacter | Candidatus Accumulibacter phosphatis clade IIA UW-1 |
DNA section
IS Length : 1123 bp
Ends
IR Length : 14/16
IRL : GGCGTTGGTGTAGTATATTGGCATGATCCCGGGTGTGGCGGGGCGTGGGT
IRR : GGCGTTGGTGCACTATTAGTAATTGCTAATATTCAATGAAACTGGATTCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGATTTACT | TTGCGGCAC | CGTTCTTCTC | 9 |
| ATCAATACG | G/AACCTGCTG | CGGTTCGTCC | 9 |
| GGCGTTTATG | CCGCGAAAG | CCCCTTGACG | 9 |
DNA sequence
GGCGTTGGTGTAGTATATTGGCATGATCCCGGGTGTGGCGGGGCGTGGGTGTCCGAGGAGGTTGGCATGGCAATGCGAGTGAAGCCGGAGACTGGCGAGG
TGGGCCTCAAGCAGCGGTATCGGGTGACGAACTGGTCGGAGTACGACCGGGCGCTGGTCAATCGAGGCAATCTGACGATCTGGTTCGACGAGGCGAGCAT
CCGGGACAGTTGGACGCCGCCGCGTCCGATCGGACGCGGCAAGCCCGGGTTGTACTCGGAGACGGCCATTCAGACGTGTCTGACGATCAAGACCTTGTTC
CAGTTGCCGTACCGCGCCACGGAAGGACTGATCAAGTCGCTGATGCGCCTGTGTCACCTGGACCTGCCGGTGCCGGACCACACCCACATGTCGCGACGGG
CCGGAGAGCTTTCGGTGAAGATACCGCGCCGGCCGCGTCAGGGGCCGACGCACGTGGTGGTCGATTCGACTGGCCTGAAGATTTTCGGCGAAGGCGAATG
GAAGGTGCGTCAGCACGGTGTCGGCAAGCGCCGCACCTGGCGCAAGATCCATCTGGCCGTAGACGAAAGCACCAAGGACATCATCGGCATTGAAGTGACC
ACCACCGCCTGGGGCGACAGCGAAATCTTGCCCGGCCTGCTCGACCAGATCGAAGGCGAGATCGCCCAAGTCTCGGCCGATGGTGCCTACGACAGCCACG
GCTGCCATGCGGCAATCGCCGAGCGGGACGCGCGTGCCACCATCCCGCCACGCGACGGTGCGGTCACGTGGGGAGGCGACCACGCTCGCGACGTCATCCT
CCAGGAAATTGAAACCAAGGGACTCGACGGCTGGAAGAACGATAGCGGATACCACCGACGCAGCATTGCCGAGAACATGATGTACCGGTTCAAGCAACTG
GGGGACACCCTGTTCTCCCGACGCTTCGAGCGACAAGTGAACGAAGCCCACGTTCGGGCGGCCATCATCAACACCTTCACCTACCTGGGCATGCCGCAAT
CGGTCCGGGTAGGGCAAGTTGCGCCTGCTGCATGACGACGGACGGGAAATGGGGGAACTCATGCCGGAAACGAGGAATCCAGTTTCATTGAATATTAGCA
ATTACTAATAGTGCACCAACGCC
TGGGCCTCAAGCAGCGGTATCGGGTGACGAACTGGTCGGAGTACGACCGGGCGCTGGTCAATCGAGGCAATCTGACGATCTGGTTCGACGAGGCGAGCAT
CCGGGACAGTTGGACGCCGCCGCGTCCGATCGGACGCGGCAAGCCCGGGTTGTACTCGGAGACGGCCATTCAGACGTGTCTGACGATCAAGACCTTGTTC
CAGTTGCCGTACCGCGCCACGGAAGGACTGATCAAGTCGCTGATGCGCCTGTGTCACCTGGACCTGCCGGTGCCGGACCACACCCACATGTCGCGACGGG
CCGGAGAGCTTTCGGTGAAGATACCGCGCCGGCCGCGTCAGGGGCCGACGCACGTGGTGGTCGATTCGACTGGCCTGAAGATTTTCGGCGAAGGCGAATG
GAAGGTGCGTCAGCACGGTGTCGGCAAGCGCCGCACCTGGCGCAAGATCCATCTGGCCGTAGACGAAAGCACCAAGGACATCATCGGCATTGAAGTGACC
ACCACCGCCTGGGGCGACAGCGAAATCTTGCCCGGCCTGCTCGACCAGATCGAAGGCGAGATCGCCCAAGTCTCGGCCGATGGTGCCTACGACAGCCACG
GCTGCCATGCGGCAATCGCCGAGCGGGACGCGCGTGCCACCATCCCGCCACGCGACGGTGCGGTCACGTGGGGAGGCGACCACGCTCGCGACGTCATCCT
CCAGGAAATTGAAACCAAGGGACTCGACGGCTGGAAGAACGATAGCGGATACCACCGACGCAGCATTGCCGAGAACATGATGTACCGGTTCAAGCAACTG
GGGGACACCCTGTTCTCCCGACGCTTCGAGCGACAAGTGAACGAAGCCCACGTTCGGGCGGCCATCATCAACACCTTCACCTACCTGGGCATGCCGCAAT
CGGTCCGGGTAGGGCAAGTTGCGCCTGCTGCATGACGACGGACGGGAAATGGGGGAACTCATGCCGGAAACGAGGAATCCAGTTTCATTGAATATTAGCA
ATTACTAATAGTGCACCAACGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 969 bp | 322 aa | 67 | 1035 | + | No |
Chemistry : DDE
ORF sequence :
MAMRVKPETGEVGLKQRYRVTNWSEYDRALVNRGNLTIWFDEASIRDSWTPPRPIGRGKPGLYSETAIQTCLTIKTLFQLPYRATEGLIKSLMRLCHLDL
PVPDHTHMSRRAGELSVKIPRRPRQGPTHVVVDSTGLKIFGEGEWKVRQHGVGKRRTWRKIHLAVDESTKDIIGIEVTTTAWGDSEILPGLLDQIEGEIA
QVSADGAYDSHGCHAAIAERDARATIPPRDGAVTWGGDHARDVILQEIETKGLDGWKNDSGYHRRSIAENMMYRFKQLGDTLFSRRFERQVNEAHVRAAI
INTFTYLGMPQSVRVGQVAPAA
PVPDHTHMSRRAGELSVKIPRRPRQGPTHVVVDSTGLKIFGEGEWKVRQHGVGKRRTWRKIHLAVDESTKDIIGIEVTTTAWGDSEILPGLLDQIEGEIA
QVSADGAYDSHGCHAAIAERDARATIPPRDGAVTWGGDHARDVILQEIETKGLDGWKNDSGYHRRSIAENMMYRFKQLGDTLFSRRFERQVNEAHVRAAI
INTFTYLGMPQSVRVGQVAPAA
Blast result :
Comments
ISCap2 is 66% aa similar to ISEc35.
References
1] ISfinder annotation (2010)
2] Martin,H.G., Ivanova,N., Kunin,V., Warnecke,F., Barry,K., He,S., Salamov,A., Szeto,E., Dalin,E., Pangilinan,J.L., Lapidus,A., Lowry,S., Kyrpides,N.C., McMahon,K.D. and Hugenholtz,P. (2009) Direct submission GenBank.
3] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Barry,K., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., McMahon,K.D. and Hugenholtz,P. (2009) Direct submission GenBank.
2] Martin,H.G., Ivanova,N., Kunin,V., Warnecke,F., Barry,K., He,S., Salamov,A., Szeto,E., Dalin,E., Pangilinan,J.L., Lapidus,A., Lowry,S., Kyrpides,N.C., McMahon,K.D. and Hugenholtz,P. (2009) Direct submission GenBank.
3] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Barry,K., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., McMahon,K.D. and Hugenholtz,P. (2009) Direct submission GenBank.