ISBam3

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABLK01000585 ND Burkholderia ambifaria
Burkholderia ambifaria MEX-5
DNA section
IS Length : 1133 bp

Ends


IR Length : 18/19

IRL : GGCGTTGTTGCATTAATCGGACGGGCAAGCGGCCGGCTGACGTTTACGCA
IRR : GGCGTTGTTGCATAAATCGAGTGTGAGGACGAAGTGACTCCCATGTTTAC

Insertion site


Left flankDirect repeatRight flankDR Length
GGGGTTTTTGCAACGGTGGCTCCCTTAAG9

DNA sequence

GGCGTTGTTGCATTAATCGGACGGGCAAGCGGCCGGCTGACGTTTACGCACAACAGCCGGCCTGGCGCCCCTGTTAACAATTCGGGTTCCTGCGTAGATT
ATCGATTTTTGGCTTCGAGAAGATGCGCAGGGACAAGGGCAAGACGAGCGGAGCGAAGGCGCGCTACCGTGTCAGGAACTGGTCGGCCTACAACGCCGGC
CTGATCAACCGAGGTAACGTCACGATGTGGATCGACGAAGCCGCCCTTGCGGGCATGCCGGAGGCCGAGCCAACGCGCGGCCGTCCGCGTCTGTACAGCG
ACGCGCTGATCCAGGCGTTGCTGGGCATCAAGACCGTGTTCCGCCTGCCGCTGCGCGCGCTGCAAGGCTTCGCGCAAAGCCTGCGCGAGCTGGCTTTCGC
CACCTTGCCCATGCCGAACTACACGACGCTCTGTCGTCGTGCGCAAACGCTTGAGGTTCAACTGCCGATCGTTGGCGACGGCGAGCCGATTCATCTGGTG
GTCGACAGCACCGGCATGAAGGTCTACGGCGAAGGCGAATGGAAGGTGCGCCAGCATGGCTATTCGAAGCGTCGCACGTGGCGCAAGGTGCATCTCGGGC
TCGACGCGAACCACGGTCAGATGCGAGCTGCGCTGATGACACATCAGGATGTCGCCGACGGTGATGTCCTGGCCGAACTGCTTGACCAGATCCCGGACGA
CGAGCTGCTCGATGTCATCGGCGGTGACGGGGCCTACGACACCAAGCCATGCCATGCCGCGATCGCCGCACGCGGCGCAACGCCTTCGATTCCGCCGCGC
GAAGGCGCTGCTCACTGGGCCGCGAACACGTTCGGCGCGACGTGGCGCAACGACGCGGTCGATGCGATCGCCCGACTCGGCCGCCGCGAATGGAAGAAGG
ACAGCGGCTACCATCGGCGCTCGCTCGCGGAGAACGCGATGTATCGCTTCAAGACGCTCACGGGTAACTGCCTGTGGGCACGACGCACCGAATCGCAGGC
GACCGAGGTGGCCATCCGCGTGGGCGTGCTGAACCGCATGGCGGACCTCGCACGTCCGCAATCCGTTCGCATTGCCTGACGCCGTAAACATGGGAGTCAC
TTCGTCCTCACACTCGATTTATGCAACAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa1231079+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRRDKGKTSGAKARYRVRNWSAYNAGLINRGNVTMWIDEAALAGMPEAEPTRGRPRLYSDALIQALLGIKTVFRLPLRALQGFAQSLRELAFATLPMPNY
TTLCRRAQTLEVQLPIVGDGEPIHLVVDSTGMKVYGEGEWKVRQHGYSKRRTWRKVHLGLDANHGQMRAALMTHQDVADGDVLAELLDQIPDDELLDVIG
GDGAYDTKPCHAAIAARGATPSIPPREGAAHWAANTFGATWRNDAVDAIARLGRREWKKDSGYHRRSLAENAMYRFKTLTGNCLWARRTESQATEVAIRV
GVLNRMADLARPQSVRIA

 

Blast result :
Comments
ISBam3 is 87% aa similar to ISButh7.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Tiedje,J. and Richardson,P. (2008) Direct submission GenBank.