ISSmi3

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_013853 ND Streptococcus mitis
Streptococcus mitis B6
DNA section
IS Length : 1531 bp

Ends


IR Length : 21/25

IRL : GCTAACTTCTCAAAGTAACTTCCACTTACCTAACCGAAGTGGAAATTAGT
IRR : GGTAAATTCCCAAACTAACTTCCACCGCTAATCCAAGTGGAAGTTAGTGT

Insertion site


Left flankDirect repeatRight flankDR Length
CAGCTTCTCAAGCTTTAACCGCTTTACAACAAG13
TAGAAGTTACc/gAAAATCTCTTCAAACCACGTCA13

DNA sequence

GCTAACTTCTCAAAGTAACTTCCACTTACCTAACCGAAGTGGAAATTAGTCTAAAACGGATTTTTATGGTGGAATTAAGTATGAGACGTTTGAGTTAGAA
ATGAGGTCTACTATGACAAAACATAAACACCTTACCCTTTCAGACCGTAATGACATCCAACTAGGCTTAGAGCGCGGTGAAACCTTCAAAGCTATTGGAC
AATCCATTCTAAAAGACCCAACTACTGTTTCCAAAGAAGTCAAACGAAACAGACAAGTCCGAGAGTCTACATGCCATAACCTTCCTTGCCCTCTACTCGA
TAAAGCTCCCTTTGTCTGTAATGGATGTCCTAAAAGAAGACAAAATTGTGACTATAAGAAGATTTTCTACCTAGCTAAGCAAGCTCAAAAACAGTACGAA
CAAACTCTTGTCGAAGCACGTGAAGGAACTCCCCTCAATTCCAAGACCTTCTGGGAAATGGACAAAGTCATTTCTGATGGGGTTAAAAAGGGACAACACA
TCTATCATATCCTCAAAACTCATAACCTTGATGTCAGCTCCTCAACTGTATATCGACATATCCGAAAAGGATACCTATCTATCGCTCCTATTGACCTAGC
CAGAGCCGTTAAATTCAAAGAAAGACGGAAACGTAATCTCCCCTCCATTCCTAAAGAAGCTAAAAAAGGTCGCTCCTATGAGGATTTCCAAAACTATTTA
GCACTGAATCAACTAGACTCTTGGCTGGAAATGGATACGGTTATGGGCAGAATGGGAGGTAAAGTTCTACTCACCTTCAATCTCTCTTTCTGTAACTTTA
TCTTCGCTAGACTGCTGGATAATAAAACTGCCCTTGAGGTTACCAAACACCTCTATAAACTCAAGAACACTCTTCACCAAGCTGACAAAGATTTCTTCCA
ACTCTTTCCTGTCATCCTGACAGATAATGGTGGAGAGTTTGCCAGAGTCGATGATATAGAAATGGATGTGCGGGGAGAGAGTAAACTCTTCTTTTGTGAA
CCCAATCGCTCTGACCAGAAAGGCAGAATTGAGAAAAATCATACGCTGATTCGCGACATTCTACCTAAAGGAACTTCTTTTGACAATTTAACTCAAGAGG
ACATCAATCTCGTTTGTTCTCATGTCAACAGTGTCAAACGTGCTGCTTTGAATGGAAAGTCAGCCTATGAACTCTTTGCCTTTACCTATGGAGAAGAGAT
TCCTAAGCTTCTAGGCATTTCTAAAATACCTGCAGAAGACGTCTGCCAGTCGTCTACATTACTCCAACATAAGTTCTAAAAACTAATCTTCAACCCCATT
CAAACGTCTCACACTAACTTCCACCATAGCGGAACTTAATCTGAAACGCTTTCAGATGAGGGGATTTTGTGCGCTCTTTTTTTCGATTCATTTTGGTTAC
AAAAGCGATGAAATCAAGCATGAGTAAAACCAGTGGAACTTACCCTGACACGGATTCTCACTGGTTTTTACGATTTTTATCACACTAACTTCCACTTGGA
TTAGCGGTGGAAGTTAGTTTGGGAATTTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa1131279+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTKHKHLTLSDRNDIQLGLERGETFKAIGQSILKDPTTVSKEVKRNRQVRESTCHNLPCPLLDKAPFVCNGCPKRRQNCDYKKIFYLAKQAQKQYEQTLV
EAREGTPLNSKTFWEMDKVISDGVKKGQHIYHILKTHNLDVSSSTVYRHIRKGYLSIAPIDLARAVKFKERRKRNLPSIPKEAKKGRSYEDFQNYLALNQ
LDSWLEMDTVMGRMGGKVLLTFNLSFCNFIFARLLDNKTALEVTKHLYKLKNTLHQADKDFFQLFPVILTDNGGEFARVDDIEMDVRGESKLFFCEPNRS
DQKGRIEKNHTLIRDILPKGTSFDNLTQEDINLVCSHVNSVKRAALNGKSAYELFAFTYGEEIPKLLGISKIPAEDVCQSSTLLQHKF

 

Blast result :
Comments
ISSmi3 is 87% aa similar to ISSag9.
References
1] Submitted by ISfinder (2010)
2] Denapaite,D., Bruckner,R., Nuhn,M., Reichmann,P., Henrich,B., Maurer,P., Schahle,Y., Selbmann,P., Zimmermann,W., Wambutt,R. and Hakenbeck,R. (2010) PLoS ONE 5 (2), E9426