ISSpn10
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Streptococcus pneumoniae | Streptococcus pneumoniae |
DNA section
IS Length : 1536 bp
Ends
Left end : GCATCTAGTAGGATGCAGGCGGCTCTGTCAGGCTGTGATAAGGATTCTCTTATGCGAGGATGTTGGAACAAGGTGTTTCTGGGAAACCTTACAGTAGTCA
Right end : GAAAACATCGTTTTCAGTAGAGCTTCTTTAGTGCACCCTTTTTTTGAAATAGTTTTCAAACTTTGAGCGGGGGTCGCTTGACATTTTACCACTAGACTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GCATCTAGTAGGATGCAGGCGGCTCTGTCAGGCTGTGATAAGGATTCTCTTATGCGAGGATGTTGGAACAAGGTGTTTCTGGGAAACCTTACAGTAGTCA
AAAAAACTTCCAAATCTAATGGAAAGGAGACCTTCCTTAATGAAATGTTTTGTCGGTTTAGACGTCAGCTCTACAAAATTAGATGTGTGTATCATGTTGA
ATGATACTAGCACCCCCGTCACTGCTTCCCTCTCTAATGACCTTTCTGGGGCAACAGAGATTAAGAATCATATCCTTGATTTGAATCATACCTATCACTT
CGAAAGGATTGTCATTGGCATGGAAGCAACCAGTCTCTACAGTTTCCACCCTGCTATGTTCTTCCATGAAGATAGTCAGTTGAAAGAACTACATGTTGAG
ATTATGGTCGAACAACCTAATAAAATCAAGAAATATCGGGATGCTTTCGAAGAAAACAAAAACGATACCATTGATGCTTTCTACATTGCGGATTATTTCC
GTATTGAGCGATTTTCACCTTCTTTCTTAAAAGAAGAGAAATACATGGCTCTCCAACATCTCACAAGAACCAGACTCCAAATCATCGAGCAATTAACCAG
AACCAAACAGCACTTCATTGAAAATATCTACTACAAGTGCAATACCTTGGCTTATCAATTCAAGAAAGAAGAACTCTCTACTAACCTATGGAGTTCAACG
ATGATGACCTTGATAACAGATGAGATGACCTTAGACGAACTTGCTAACATGCCTCTTCAAGAATTAGCTGATTGGCTCCAACAACTGGGTAAAGGGCATT
TTAAGGACTCTGAGAAGCTTGCTCAAACCATTCAAGCCGCTATCAGAGGTTCTTATCGCCTCTCTAAACTCCAACAAGATTCAGTCAATGTCATTCTCGG
ACTTCTGGCTAGGGAAATTCGAAACCTGGAAAAAATGATCAAGGAAATTGATAAGGCCATTGAAGATATGGTGGAAACCATTCCTGAATATCAATGCCTG
ACCTCCATACCTGGGGTCGGTAAGGTCTACGCTGCTGGTATCATTGCCGAAATTGGACAAATCGAACGCTTTAAAGACCATCCCCAGGTCGCAAAGTTTG
CTGGTCTGAATTGGAGAGAAAAGCAATCTGGTAACTCAAACTCACAACATACTTCGCTTGTGAATAGGGGCAATCGTTATCTGCGCTACTACCTGGTTGA
AGCCGCCAACTCGGTAAGGCGCTATGATGACGAATACAAGGATTTCTATAAGAAGAAATACCATGAAGTACCTAAACACCAACACAAACGAGCCATCGTA
CTAACCGCTAGAAAATTTGTGCGCCTGGTGGTTGTGCTACTACGCAACCATCAACTCTATACGCCACCAAGGAGGCTTATGGAAGATAAGTAAGTTATAT
CTGCACCTCTCCTTGAAAATCTACTGAAAACAGTTTGAAAACATCGTTTTCAGTAGAGCTTCTTTAGTGCACCCTTTTTTTGAAATAGTTTTCAAACTTT
GAGCGGGGGTCGCTTGACATTTTACCACTAGACTTT
AAAAAACTTCCAAATCTAATGGAAAGGAGACCTTCCTTAATGAAATGTTTTGTCGGTTTAGACGTCAGCTCTACAAAATTAGATGTGTGTATCATGTTGA
ATGATACTAGCACCCCCGTCACTGCTTCCCTCTCTAATGACCTTTCTGGGGCAACAGAGATTAAGAATCATATCCTTGATTTGAATCATACCTATCACTT
CGAAAGGATTGTCATTGGCATGGAAGCAACCAGTCTCTACAGTTTCCACCCTGCTATGTTCTTCCATGAAGATAGTCAGTTGAAAGAACTACATGTTGAG
ATTATGGTCGAACAACCTAATAAAATCAAGAAATATCGGGATGCTTTCGAAGAAAACAAAAACGATACCATTGATGCTTTCTACATTGCGGATTATTTCC
GTATTGAGCGATTTTCACCTTCTTTCTTAAAAGAAGAGAAATACATGGCTCTCCAACATCTCACAAGAACCAGACTCCAAATCATCGAGCAATTAACCAG
AACCAAACAGCACTTCATTGAAAATATCTACTACAAGTGCAATACCTTGGCTTATCAATTCAAGAAAGAAGAACTCTCTACTAACCTATGGAGTTCAACG
ATGATGACCTTGATAACAGATGAGATGACCTTAGACGAACTTGCTAACATGCCTCTTCAAGAATTAGCTGATTGGCTCCAACAACTGGGTAAAGGGCATT
TTAAGGACTCTGAGAAGCTTGCTCAAACCATTCAAGCCGCTATCAGAGGTTCTTATCGCCTCTCTAAACTCCAACAAGATTCAGTCAATGTCATTCTCGG
ACTTCTGGCTAGGGAAATTCGAAACCTGGAAAAAATGATCAAGGAAATTGATAAGGCCATTGAAGATATGGTGGAAACCATTCCTGAATATCAATGCCTG
ACCTCCATACCTGGGGTCGGTAAGGTCTACGCTGCTGGTATCATTGCCGAAATTGGACAAATCGAACGCTTTAAAGACCATCCCCAGGTCGCAAAGTTTG
CTGGTCTGAATTGGAGAGAAAAGCAATCTGGTAACTCAAACTCACAACATACTTCGCTTGTGAATAGGGGCAATCGTTATCTGCGCTACTACCTGGTTGA
AGCCGCCAACTCGGTAAGGCGCTATGATGACGAATACAAGGATTTCTATAAGAAGAAATACCATGAAGTACCTAAACACCAACACAAACGAGCCATCGTA
CTAACCGCTAGAAAATTTGTGCGCCTGGTGGTTGTGCTACTACGCAACCATCAACTCTATACGCCACCAAGGAGGCTTATGGAAGATAAGTAAGTTATAT
CTGCACCTCTCCTTGAAAATCTACTGAAAACAGTTTGAAAACATCGTTTTCAGTAGAGCTTCTTTAGTGCACCCTTTTTTTGAAATAGTTTTCAAACTTT
GAGCGGGGGTCGCTTGACATTTTACCACTAGACTTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 140 | 1393 | + | No |
Chemistry : DEDD
ORF sequence :
MKCFVGLDVSSTKLDVCIMLNDTSTPVTASLSNDLSGATEIKNHILDLNHTYHFERIVIGMEATSLYSFHPAMFFHEDSQLKELHVEIMVEQPNKIKKYR
DAFEENKNDTIDAFYIADYFRIERFSPSFLKEEKYMALQHLTRTRLQIIEQLTRTKQHFIENIYYKCNTLAYQFKKEELSTNLWSSTMMTLITDEMTLDE
LANMPLQELADWLQQLGKGHFKDSEKLAQTIQAAIRGSYRLSKLQQDSVNVILGLLAREIRNLEKMIKEIDKAIEDMVETIPEYQCLTSIPGVGKVYAAG
IIAEIGQIERFKDHPQVAKFAGLNWREKQSGNSNSQHTSLVNRGNRYLRYYLVEAANSVRRYDDEYKDFYKKKYHEVPKHQHKRAIVLTARKFVRLVVVL
LRNHQLYTPPRRLMEDK
DAFEENKNDTIDAFYIADYFRIERFSPSFLKEEKYMALQHLTRTRLQIIEQLTRTKQHFIENIYYKCNTLAYQFKKEELSTNLWSSTMMTLITDEMTLDE
LANMPLQELADWLQQLGKGHFKDSEKLAQTIQAAIRGSYRLSKLQQDSVNVILGLLAREIRNLEKMIKEIDKAIEDMVETIPEYQCLTSIPGVGKVYAAG
IIAEIGQIERFKDHPQVAKFAGLNWREKQSGNSNSQHTSLVNRGNRYLRYYLVEAANSVRRYDDEYKDFYKKKYHEVPKHQHKRAIVLTARKFVRLVVVL
LRNHQLYTPPRRLMEDK
Blast result :
Comments
ISSpn10 is 69% aa similar to ISBth166.
The proposed ends for this sequence are based on the similarities with closely relative elements. These will be able to be later confirmed compared with closer sequences.
The proposed ends for this sequence are based on the similarities with closely relative elements. These will be able to be later confirmed compared with closer sequences.
References
1] Baldry S. (2010) Direct submission