ISSpn10

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Streptococcus pneumoniae
Streptococcus pneumoniae
DNA section
IS Length : 1536 bp

Ends


Left end : GCATCTAGTAGGATGCAGGCGGCTCTGTCAGGCTGTGATAAGGATTCTCTTATGCGAGGATGTTGGAACAAGGTGTTTCTGGGAAACCTTACAGTAGTCA
Right end : GAAAACATCGTTTTCAGTAGAGCTTCTTTAGTGCACCCTTTTTTTGAAATAGTTTTCAAACTTTGAGCGGGGGTCGCTTGACATTTTACCACTAGACTTT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GCATCTAGTAGGATGCAGGCGGCTCTGTCAGGCTGTGATAAGGATTCTCTTATGCGAGGATGTTGGAACAAGGTGTTTCTGGGAAACCTTACAGTAGTCA
AAAAAACTTCCAAATCTAATGGAAAGGAGACCTTCCTTAATGAAATGTTTTGTCGGTTTAGACGTCAGCTCTACAAAATTAGATGTGTGTATCATGTTGA
ATGATACTAGCACCCCCGTCACTGCTTCCCTCTCTAATGACCTTTCTGGGGCAACAGAGATTAAGAATCATATCCTTGATTTGAATCATACCTATCACTT
CGAAAGGATTGTCATTGGCATGGAAGCAACCAGTCTCTACAGTTTCCACCCTGCTATGTTCTTCCATGAAGATAGTCAGTTGAAAGAACTACATGTTGAG
ATTATGGTCGAACAACCTAATAAAATCAAGAAATATCGGGATGCTTTCGAAGAAAACAAAAACGATACCATTGATGCTTTCTACATTGCGGATTATTTCC
GTATTGAGCGATTTTCACCTTCTTTCTTAAAAGAAGAGAAATACATGGCTCTCCAACATCTCACAAGAACCAGACTCCAAATCATCGAGCAATTAACCAG
AACCAAACAGCACTTCATTGAAAATATCTACTACAAGTGCAATACCTTGGCTTATCAATTCAAGAAAGAAGAACTCTCTACTAACCTATGGAGTTCAACG
ATGATGACCTTGATAACAGATGAGATGACCTTAGACGAACTTGCTAACATGCCTCTTCAAGAATTAGCTGATTGGCTCCAACAACTGGGTAAAGGGCATT
TTAAGGACTCTGAGAAGCTTGCTCAAACCATTCAAGCCGCTATCAGAGGTTCTTATCGCCTCTCTAAACTCCAACAAGATTCAGTCAATGTCATTCTCGG
ACTTCTGGCTAGGGAAATTCGAAACCTGGAAAAAATGATCAAGGAAATTGATAAGGCCATTGAAGATATGGTGGAAACCATTCCTGAATATCAATGCCTG
ACCTCCATACCTGGGGTCGGTAAGGTCTACGCTGCTGGTATCATTGCCGAAATTGGACAAATCGAACGCTTTAAAGACCATCCCCAGGTCGCAAAGTTTG
CTGGTCTGAATTGGAGAGAAAAGCAATCTGGTAACTCAAACTCACAACATACTTCGCTTGTGAATAGGGGCAATCGTTATCTGCGCTACTACCTGGTTGA
AGCCGCCAACTCGGTAAGGCGCTATGATGACGAATACAAGGATTTCTATAAGAAGAAATACCATGAAGTACCTAAACACCAACACAAACGAGCCATCGTA
CTAACCGCTAGAAAATTTGTGCGCCTGGTGGTTGTGCTACTACGCAACCATCAACTCTATACGCCACCAAGGAGGCTTATGGAAGATAAGTAAGTTATAT
CTGCACCTCTCCTTGAAAATCTACTGAAAACAGTTTGAAAACATCGTTTTCAGTAGAGCTTCTTTAGTGCACCCTTTTTTTGAAATAGTTTTCAAACTTT
GAGCGGGGGTCGCTTGACATTTTACCACTAGACTTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa1401393+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKCFVGLDVSSTKLDVCIMLNDTSTPVTASLSNDLSGATEIKNHILDLNHTYHFERIVIGMEATSLYSFHPAMFFHEDSQLKELHVEIMVEQPNKIKKYR
DAFEENKNDTIDAFYIADYFRIERFSPSFLKEEKYMALQHLTRTRLQIIEQLTRTKQHFIENIYYKCNTLAYQFKKEELSTNLWSSTMMTLITDEMTLDE
LANMPLQELADWLQQLGKGHFKDSEKLAQTIQAAIRGSYRLSKLQQDSVNVILGLLAREIRNLEKMIKEIDKAIEDMVETIPEYQCLTSIPGVGKVYAAG
IIAEIGQIERFKDHPQVAKFAGLNWREKQSGNSNSQHTSLVNRGNRYLRYYLVEAANSVRRYDDEYKDFYKKKYHEVPKHQHKRAIVLTARKFVRLVVVL
LRNHQLYTPPRRLMEDK

 

Blast result :
Comments
ISSpn10 is 69% aa similar to ISBth166.
The proposed ends for this sequence are based on the similarities with closely relative elements. These will be able to be later confirmed compared with closer sequences.
References
1] Baldry S. (2010) Direct submission