ISSmi1
- Family IS30
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013853 | ND | Streptococcus mitis | Streptococcus mitis B6 |
DNA section
IS Length : 1543 bp
Ends
IR Length : 21/24
IRL : CGTAACTTCTCAAAGTAACTTCCATCTCTCTCCCAAAACTGGAAGTTAGT
IRR : GGTAACTTCTAAAACTAACTTCCAGTTTCCCACAACCTAGCTTTTAGTAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTTTTTTTAT | CTTTTTTTATTTT | TTGCATAGCT | 13 |
| ATTTTCTAGA | GATATTTTAAAAG | AGCTGGATTT | 13 |
| TCCTAGGTAA | AAAAGGGAGCAAA | AATACTGAGA | 13 |
| AAATATGCTA | TAATAATACCAAA | AGATAAAGAA | 13 |
| AAAACACCTA | AATAAAAAAAGAA | CCTATTCAAA | 13 |
| ATACTCTTCG | AAAATCTCTTCAG | CTAACTTCTC | 13 |
| AATCTACCAG | CCTCTCTGTAAAT | ACATATATAA | 13 |
| TTTTATTGTT | AATTTTAGCTCTT | TGGTACCACC | 13 |
| AGAAGTTACC | CAATTTTTTTGTT | TTTCTGTTCA | 13 |
| ACCTCACGAG | ATTATTTTTCACG | AATGACTTCA | 13 |
| ATTTTTGATA | ATTTTTACATTAG | ATCAGCCTCT | 13 |
| TGTTTTTCCG | TTTTTTTACAATG | AAACTGTTTT | 13 |
| AAAAATAGAG | TTTTTTCTAAAAT | TTTGTAGTAA | 13 |
| ATTTACTAGC | CAATTTTTTTGTT | CGTAACTTCT | 13 |
| CCATTTAATA | ACCCATTTCCTAC | ATCTCAGATT | 13 |
| TTTAATTGCA | ATTTGAAAAAACA | AGAATATTTT | 13 |
| ATCCCTTATT | AAACACAAAAAGA | AGCCTTTCGG | 13 |
| AAAAAACGCT | CATTTTTCTTAAA | TTATTAATCT | 13 |
| ATTTTTTTGA | AATAATTAAAAAC | CGTAACTTCT | 13 |
| GTTTTCCACA | TAAAAAAAACGAG | AGTTTGACTC | 13 |
| AGAAGTTACC | AATAATTAAAAAC | TTCCCCTATA | 13 |
| TTTTTTATCG | TTATTTGGAAGGG | GCTTTATCTG | 13 |
| TATTAGCTGA | ATCGTATTTATTG | GTAGCTGAGC | 13 |
| ATATGAAAAA | TATTTTTCTGAAT | TCCACTCTTT | 13 |
| AGAAGTTACC | CTTTTTTAAAATT | CGTAACTTCT | 13 |
| AGAAGTTACC | CTTTTTTAAAATT | CGTAACTTCT | 13 |
| TTTTTGCAAA | CTTTTTTAAAATT | CGTAACTTCT | 13 |
| AAATGAAGCT | TTTTCTTTTACTC | GTAACTTCTC | 13 |
| GAAAGTGGCT | ATTTTATTGAAAG | TTTACCTTTT | 13 |
| TATGGACCTG | GTCAAGGGAAAAG | TTTGCCAGCC | 13 |
| TTTTGTAAAA | ATTCTTTTGAAAG | TCTTCAACAA | 13 |
| TGTCACTCAT | AAAATTCATCTAC | ACTAAGAACG | 13 |
| AAGTTACCTT | TTTTTATTTAACG | TAGACAATCC | 13 |
| TTCTTTATCC | CTAAACAAAAATG | CCTATACTTA | 13 |
| AAAAAGATGA | AAAAATTCTCCTG | TCCGACACAG | 13 |
| AGAAGTTACC | c/aTTTTTTAAAATT | TTTGTGATTT | 15 |
| TATTTGTACC | Ct/cTGCATCATTCT | TTTGAAAAAT | 15 |
| CATCTTAGCG | AAATAGATTGACTA | CCGAATCCCA | 14 |
| AGTCAAAGGT | TAAGAAAAAATAAc/a | GGTGAAATAT | 16 |
| AATTGGAAGA | TTTTTTTATTTAACG | CGTAACTTCT | 15 |
| TTTTTCATCC | CTTTTTTTAT | 0 | |
| ATTCTTTTGA | TTTTCTTTTA | 0 |
DNA sequence
CGTAACTTCTCAAAGTAACTTCCATCTCTCTCCCAAAACTGGAAGTTAGTCTCAGACGATGAATTATGCTAGAATTAAGTCTGAGACTTTTCGTGAGGAG
GCACCTCATGACGAAAAAACAAAAACATCTCACTCTAGAAGACCGTATTGACATCCAAACTGGAATCAGCCAACAGGAGACTTTCCGTTCCATCGCTGAG
AAGATGGGGAAAGACCCGTCAACGATTTCAAAGGAAATCAAGCGCAATCGCATCATGCATCCAACATCCGTCAAATCTGATTGCACGGATTGCCCTCTTC
TCAAAAAAGCTCCTTATGTCTGTAACAACTGTCCAAAAAAGAGGACGGATTGTGGGTTTAACCGCTATCTTTACTACGCGAAAAAGGCACAGGAGCAGTA
CGAGACTATGTTGAGGGAATCCAGACAGGGAATTCCCCTAAACAAGGAAAGTTTTTATCAGATGGACAAGGTCTTAACCCAAGGCATCCAGAAGAAACAA
AGCATCTACCATATCATTCAGACACATAACCTACCTGTGTCGAAAGCTACGGTGTATCGGCATGCCAAGCTGGGCTATCTGACAGCCAAGCCCATTGATT
TCCCTCGGATGGTCACGTTCAAGGAACGCAGAAAATCCAGAAAAGTAGCTATTCCTAAAGAGCTGAAAATTGGGCGGACCTATCAAGATTTCCAAGAGTT
ACGAGAAACAGATGATTTCTTCAAATGGTTGGAAATGGACACGGTCATCGGCAGACCTGGTGGAAAGCTACTGCTCACCTTCAACGTTTCCTTCTGCAAC
TTCCTCTTCGCCCTGCTTTTGAACAACAAGACCGCTCTGGAGGTCGCCACTAAATTCGCAGCTTTGAAAGAAAGAGTCATGGACGGAGGGTGTGCGTTCC
ATCAGCTGTTCCCTGTCATTCTCACAGACAACGGATCTGAGTTCGCCTATGTGGAGGAGCTTGAGCGAGACATTGATGGGAAGTCTCACCTCTACTTCTG
CGACCCTAGCCGTCCTGACCAGAAGGGGCGGATTGAGAAGAACCATACGGTTTTGCGAGCCATTCTTCCCAAGGGCACTTCCTTTGACCAGCTGACTCAG
AAAGACGTCAATCTAGTCATTTCCCATGTCAATTCCTTGAAACGAGAAGAGTTTCAAGGAAAATCTGCTTACGACATCTTCACCTTCACCTTTGGCGAGG
ACATCGCTGCTCTTCTGGGTTGCCAATTTGTCAAACCAGAAGACACACACCTATCACCTGATTTATTGAAATAAAGGGAATTTTCCCCTCTAACTACACA
TCTTATCACCATCGAAAAGTCTCACACTAAACGCTAGCAACTGGAATTTACTCTAAGACGACTCTGTTTTAGGGCTATTTGTCGTGCACTTTTTTCTGAG
TCTTTTCGCTTTTGAACCCTTATATATCAAGAAAAAGAAAACCAGTGGAAGTTAGTCTAAGACGGATTTCCACTGATTTCACGCGTTTTTCTCATACTAA
AAGCTAGGTTGTGGGAAACTGGAAGTTAGTTTTAGAAGTTACC
GCACCTCATGACGAAAAAACAAAAACATCTCACTCTAGAAGACCGTATTGACATCCAAACTGGAATCAGCCAACAGGAGACTTTCCGTTCCATCGCTGAG
AAGATGGGGAAAGACCCGTCAACGATTTCAAAGGAAATCAAGCGCAATCGCATCATGCATCCAACATCCGTCAAATCTGATTGCACGGATTGCCCTCTTC
TCAAAAAAGCTCCTTATGTCTGTAACAACTGTCCAAAAAAGAGGACGGATTGTGGGTTTAACCGCTATCTTTACTACGCGAAAAAGGCACAGGAGCAGTA
CGAGACTATGTTGAGGGAATCCAGACAGGGAATTCCCCTAAACAAGGAAAGTTTTTATCAGATGGACAAGGTCTTAACCCAAGGCATCCAGAAGAAACAA
AGCATCTACCATATCATTCAGACACATAACCTACCTGTGTCGAAAGCTACGGTGTATCGGCATGCCAAGCTGGGCTATCTGACAGCCAAGCCCATTGATT
TCCCTCGGATGGTCACGTTCAAGGAACGCAGAAAATCCAGAAAAGTAGCTATTCCTAAAGAGCTGAAAATTGGGCGGACCTATCAAGATTTCCAAGAGTT
ACGAGAAACAGATGATTTCTTCAAATGGTTGGAAATGGACACGGTCATCGGCAGACCTGGTGGAAAGCTACTGCTCACCTTCAACGTTTCCTTCTGCAAC
TTCCTCTTCGCCCTGCTTTTGAACAACAAGACCGCTCTGGAGGTCGCCACTAAATTCGCAGCTTTGAAAGAAAGAGTCATGGACGGAGGGTGTGCGTTCC
ATCAGCTGTTCCCTGTCATTCTCACAGACAACGGATCTGAGTTCGCCTATGTGGAGGAGCTTGAGCGAGACATTGATGGGAAGTCTCACCTCTACTTCTG
CGACCCTAGCCGTCCTGACCAGAAGGGGCGGATTGAGAAGAACCATACGGTTTTGCGAGCCATTCTTCCCAAGGGCACTTCCTTTGACCAGCTGACTCAG
AAAGACGTCAATCTAGTCATTTCCCATGTCAATTCCTTGAAACGAGAAGAGTTTCAAGGAAAATCTGCTTACGACATCTTCACCTTCACCTTTGGCGAGG
ACATCGCTGCTCTTCTGGGTTGCCAATTTGTCAAACCAGAAGACACACACCTATCACCTGATTTATTGAAATAAAGGGAATTTTCCCCTCTAACTACACA
TCTTATCACCATCGAAAAGTCTCACACTAAACGCTAGCAACTGGAATTTACTCTAAGACGACTCTGTTTTAGGGCTATTTGTCGTGCACTTTTTTCTGAG
TCTTTTCGCTTTTGAACCCTTATATATCAAGAAAAAGAAAACCAGTGGAAGTTAGTCTAAGACGGATTTCCACTGATTTCACGCGTTTTTCTCATACTAA
AAGCTAGGTTGTGGGAAACTGGAAGTTAGTTTTAGAAGTTACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1167 bp | 388 aa | 108 | 1274 | + | No |
Chemistry : DDE
ORF sequence :
MTKKQKHLTLEDRIDIQTGISQQETFRSIAEKMGKDPSTISKEIKRNRIMHPTSVKSDCTDCPLLKKAPYVCNNCPKKRTDCGFNRYLYYAKKAQEQYET
MLRESRQGIPLNKESFYQMDKVLTQGIQKKQSIYHIIQTHNLPVSKATVYRHAKLGYLTAKPIDFPRMVTFKERRKSRKVAIPKELKIGRTYQDFQELRE
TDDFFKWLEMDTVIGRPGGKLLLTFNVSFCNFLFALLLNNKTALEVATKFAALKERVMDGGCAFHQLFPVILTDNGSEFAYVEELERDIDGKSHLYFCDP
SRPDQKGRIEKNHTVLRAILPKGTSFDQLTQKDVNLVISHVNSLKREEFQGKSAYDIFTFTFGEDIAALLGCQFVKPEDTHLSPDLLK
MLRESRQGIPLNKESFYQMDKVLTQGIQKKQSIYHIIQTHNLPVSKATVYRHAKLGYLTAKPIDFPRMVTFKERRKSRKVAIPKELKIGRTYQDFQELRE
TDDFFKWLEMDTVIGRPGGKLLLTFNVSFCNFLFALLLNNKTALEVATKFAALKERVMDGGCAFHQLFPVILTDNGSEFAYVEELERDIDGKSHLYFCDP
SRPDQKGRIEKNHTVLRAILPKGTSFDQLTQKDVNLVISHVNSLKREEFQGKSAYDIFTFTFGEDIAALLGCQFVKPEDTHLSPDLLK
Blast result :
Comments
ISSmi1 is 76% aa similar to ISSag9.
References
1] Submitted by ISfinder (2010)
2] Denapaite,D., Bruckner,R., Nuhn,M., Reichmann,P., Henrich,B., Maurer,P., Schahle,Y., Selbmann,P., Zimmermann,W., Wambutt,R. and Hakenbeck,R. (2010) PLoS ONE 5 (2), E9426
2] Denapaite,D., Bruckner,R., Nuhn,M., Reichmann,P., Henrich,B., Maurer,P., Schahle,Y., Selbmann,P., Zimmermann,W., Wambutt,R. and Hakenbeck,R. (2010) PLoS ONE 5 (2), E9426