ISSpn8

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Streptococcus pneumoniae
Streptococcus pneumoniae Hungary19A-6
Streptococcus pneumoniae INV200
Streptococcus pneumoniae AP200
Streptococcus pneumoniae SPN033038
Streptococcus pneumoniae SPN994038
Streptococcus pneumoniae INV104
Streptococcus pneumoniae CGSP14
DNA section
IS Length : 1232 bp

Ends


IR Length : 21/29

IRL : TGAAAGTTCTATAATGAAGTTAGCCACCTTACCTTAGTCAAGAATTAGAT
IRR : CCCAAATTTCAAGTTGAAGTTAGCCACCCAAAAGAAATTCACTTGGCGAC

Insertion site


Left flankDirect repeatRight flankDR Length
TAACAAGTATCATTTTTTTT0
TTGTCATATTGTAATCTCTA0
GTAATCTCTACTTTGTCTCTATG3
AAAGTGTCCTAACTGGACATTTTGAACTAAAAT13
AATCATCATAATTGGAATAACACTAACAACAAT13
AAATAAGCTATTAGCTTTCTTTTCCGAATAAAT13
AATAATAACTGAAAAATAGATTCTAAAGATAAC13
CTTCTCAGATATTGAAAAAGTATTGACAAATTT13
TTTTTCGTAATAATAGTTATCTACCACATTAAG13
TTGAAAGCTTCCTGAAAGAATTTTCGAAAAATT13
ACAATCTAAAAATTTATCATTTTATGACAAACA13
TGATTTCTTTGTGTGTATCTTTATTGATGATAT13
ATTATATAACTTTCAGTTACTTTGAGAAGTTAC13
CTTTTTTCTAAAAAATTTCTAGTGCGCCAAATT13
GCTTTTTCGAATGCAAGCCCTATCTACGATACT13
AATTTATCTTTCATTAAAAGGTTAAGTAATTTT13
TTTTTTTCATTTTTTTTGCATGACTTACTAGTAG14
CTTGCGACCTATTTTTAATTTTTTTTGACTTTTT14
AAGTCAGGAAATTTTGATTTTTACAAAACAAATT14
ATATAATTTTTTCAAAAAAGGATCTAGTTTTTAT14
TAACAGTTATTTCAGATc/tTTCTTTGTAAATTTTC16

DNA sequence

TGAAAGTTCTATAATGAAGTTAGCCACCTTACCTTAGTCAAGAATTAGATGTTTCACTATGTTTGAGTAAGTTGATGATTTCATTTGATAACAGGTTTGA
AACTGTTAGGCTAGGTGGCCAAGGCTAATCATAGCCTTGGTTTAGCTGAAAAAACAGGTTCAAGGGTTCCTGTTGTCAAATGAAATGTGATTTAAGGTAT
AAGAAAACACCTCTGTGCTATACTTGTTGTTCACCACAAACACAAGGAAAGGCACAGAGATGCAAGAACATTATACCCCAAAAGGGAAACATTTGACAAT
AGATAACCGTCGCTTGATTGAGCGGTGGAAGAATGAAAATAAGTCCAATCGTGAAATTGCAGGCTTGTTAGGAAAGGCGCCTCAAACGATTCATAATGAA
GTCAAAAGAGGTACAACTTTACAACAAGTGAGAAAAGGGCTATACAAAAAGGTCTATTCTGCCGATTACGCACAAACTGTTTACCAATTCAATCGAAAAC
GGTCGGTGAAAAAGTTAATTTTAACAAAGGAAATCAGAGAGAAGATCTTACACTATCATAAGCAAAAATTTTCGCCTGAAATGATGGTTAACAAGAAGCA
AGTGAAAGTTGGTATTTCAACCATCTACTACTGGTTTCATAATGGTCATTTAGGATTGACGAAGGCCGACATGCTTTATCCCAGAAAAAGGAAAGGTGTC
AAGAAGCAAGCTAGTCCGAACTTTAAGCCGGCAGGTAAATCTATCGAAGAACGTCCTGACGTTATTAATCTTCGCTTGGAAAATGGTCATTATGAAATTG
ATACCGTCCTACTGACTAAGATAAAAAATTATTGCCTGTTAGTCTTAACCGACCGGCGGAGCAGACACCAAATTATAAGGTTAATTCCAAATAAAACTGC
TGAATCTGTCAATCAGGCGCTTACGTTACTATTAGGGGAGCATCGTATTCTGTCCATTACTGCAGATAATGGTTCGGAGTTCAAACGATTGTCTGAGGTA
TTTCCTGAGGAACATATCTACTACGCACATGCTTACTCTTCATGGGAGAGAGGTTCAAATGAAAATCATAATCGATTAATTCGGAGATGGTTACCTAAAG
GAACCAAGAAAACGACTCCGAAAGAAGTAGCTTTTATCGAAAATTGGATTAACAACTACCCTAAAAAATGCTTGGACTACAAGTCGCCAAGTGAATTTCT
TTTGGGTGGCTAACTTCAACTTGAAATTTGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa2601213+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQEHYTPKGKHLTIDNRRLIERWKNENKSNREIAGLLGKAPQTIHNEVKRGTTLQQVRKGLYKKVYSADYAQTVYQFNRKRSVKKLILTKEIREKILHYH
KQKFSPEMMVNKKQVKVGISTIYYWFHNGHLGLTKADMLYPRKRKGVKKQASPNFKPAGKSIEERPDVINLRLENGHYEIDTVLLTKIKNYCLLVLTDRR
SRHQIIRLIPNKTAESVNQALTLLLGEHRILSITADNGSEFKRLSEVFPEEHIYYAHAYSSWERGSNENHNRLIRRWLPKGTKKTTPKEVAFIENWINNY
PKKCLDYKSPSEFLLGG

 

Blast result :
Comments
ISSpn8 sequenced at the capsule locus of a non-typeable (non-encapsulated) isolate of Streptococcus pneumoniae. ISSpn8 responsible for disrupting wchA gene of serotype 14 capsule biosynthesis operon.
ISSpn8 is 80% aa similar to IS1239.
References
1] Baldry S. (2010) Direct submission