ISSpn8
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Streptococcus pneumoniae | Streptococcus pneumoniae Hungary19A-6 Streptococcus pneumoniae INV200 Streptococcus pneumoniae AP200 Streptococcus pneumoniae SPN033038 Streptococcus pneumoniae SPN994038 Streptococcus pneumoniae INV104 Streptococcus pneumoniae CGSP14 |
DNA section
IS Length : 1232 bp
Ends
IR Length : 21/29
IRL : TGAAAGTTCTATAATGAAGTTAGCCACCTTACCTTAGTCAAGAATTAGAT
IRR : CCCAAATTTCAAGTTGAAGTTAGCCACCCAAAAGAAATTCACTTGGCGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAACAAGTAT | CATTTTTTTT | 0 | |
TTGTCATATT | GTAATCTCTA | 0 | |
GTAATCTCTA | CTT | TGTCTCTATG | 3 |
AAAGTGTCCT | AACTGGACATTTT | GAACTAAAAT | 13 |
AATCATCATA | ATTGGAATAACAC | TAACAACAAT | 13 |
AAATAAGCTA | TTAGCTTTCTTTT | CCGAATAAAT | 13 |
AATAATAACT | GAAAAATAGATTC | TAAAGATAAC | 13 |
CTTCTCAGAT | ATTGAAAAAGTAT | TGACAAATTT | 13 |
TTTTTCGTAA | TAATAGTTATCTA | CCACATTAAG | 13 |
TTGAAAGCTT | CCTGAAAGAATTT | TCGAAAAATT | 13 |
ACAATCTAAA | AATTTATCATTTT | ATGACAAACA | 13 |
TGATTTCTTT | GTGTGTATCTTTA | TTGATGATAT | 13 |
ATTATATAAC | TTTCAGTTACTTT | GAGAAGTTAC | 13 |
CTTTTTTCTA | AAAAATTTCTAGT | GCGCCAAATT | 13 |
GCTTTTTCGA | ATGCAAGCCCTAT | CTACGATACT | 13 |
AATTTATCTT | TCATTAAAAGGTT | AAGTAATTTT | 13 |
TTTTTTTCAT | TTTTTTTGCATGAC | TTACTAGTAG | 14 |
CTTGCGACCT | ATTTTTAATTTTTT | TTGACTTTTT | 14 |
AAGTCAGGAA | ATTTTGATTTTTAC | AAAACAAATT | 14 |
ATATAATTTT | TTCAAAAAAGGATC | TAGTTTTTAT | 14 |
TAACAGTTAT | TTCAGATc/tTTCTTT | GTAAATTTTC | 16 |
DNA sequence
TGAAAGTTCTATAATGAAGTTAGCCACCTTACCTTAGTCAAGAATTAGATGTTTCACTATGTTTGAGTAAGTTGATGATTTCATTTGATAACAGGTTTGA
AACTGTTAGGCTAGGTGGCCAAGGCTAATCATAGCCTTGGTTTAGCTGAAAAAACAGGTTCAAGGGTTCCTGTTGTCAAATGAAATGTGATTTAAGGTAT
AAGAAAACACCTCTGTGCTATACTTGTTGTTCACCACAAACACAAGGAAAGGCACAGAGATGCAAGAACATTATACCCCAAAAGGGAAACATTTGACAAT
AGATAACCGTCGCTTGATTGAGCGGTGGAAGAATGAAAATAAGTCCAATCGTGAAATTGCAGGCTTGTTAGGAAAGGCGCCTCAAACGATTCATAATGAA
GTCAAAAGAGGTACAACTTTACAACAAGTGAGAAAAGGGCTATACAAAAAGGTCTATTCTGCCGATTACGCACAAACTGTTTACCAATTCAATCGAAAAC
GGTCGGTGAAAAAGTTAATTTTAACAAAGGAAATCAGAGAGAAGATCTTACACTATCATAAGCAAAAATTTTCGCCTGAAATGATGGTTAACAAGAAGCA
AGTGAAAGTTGGTATTTCAACCATCTACTACTGGTTTCATAATGGTCATTTAGGATTGACGAAGGCCGACATGCTTTATCCCAGAAAAAGGAAAGGTGTC
AAGAAGCAAGCTAGTCCGAACTTTAAGCCGGCAGGTAAATCTATCGAAGAACGTCCTGACGTTATTAATCTTCGCTTGGAAAATGGTCATTATGAAATTG
ATACCGTCCTACTGACTAAGATAAAAAATTATTGCCTGTTAGTCTTAACCGACCGGCGGAGCAGACACCAAATTATAAGGTTAATTCCAAATAAAACTGC
TGAATCTGTCAATCAGGCGCTTACGTTACTATTAGGGGAGCATCGTATTCTGTCCATTACTGCAGATAATGGTTCGGAGTTCAAACGATTGTCTGAGGTA
TTTCCTGAGGAACATATCTACTACGCACATGCTTACTCTTCATGGGAGAGAGGTTCAAATGAAAATCATAATCGATTAATTCGGAGATGGTTACCTAAAG
GAACCAAGAAAACGACTCCGAAAGAAGTAGCTTTTATCGAAAATTGGATTAACAACTACCCTAAAAAATGCTTGGACTACAAGTCGCCAAGTGAATTTCT
TTTGGGTGGCTAACTTCAACTTGAAATTTGGG
AACTGTTAGGCTAGGTGGCCAAGGCTAATCATAGCCTTGGTTTAGCTGAAAAAACAGGTTCAAGGGTTCCTGTTGTCAAATGAAATGTGATTTAAGGTAT
AAGAAAACACCTCTGTGCTATACTTGTTGTTCACCACAAACACAAGGAAAGGCACAGAGATGCAAGAACATTATACCCCAAAAGGGAAACATTTGACAAT
AGATAACCGTCGCTTGATTGAGCGGTGGAAGAATGAAAATAAGTCCAATCGTGAAATTGCAGGCTTGTTAGGAAAGGCGCCTCAAACGATTCATAATGAA
GTCAAAAGAGGTACAACTTTACAACAAGTGAGAAAAGGGCTATACAAAAAGGTCTATTCTGCCGATTACGCACAAACTGTTTACCAATTCAATCGAAAAC
GGTCGGTGAAAAAGTTAATTTTAACAAAGGAAATCAGAGAGAAGATCTTACACTATCATAAGCAAAAATTTTCGCCTGAAATGATGGTTAACAAGAAGCA
AGTGAAAGTTGGTATTTCAACCATCTACTACTGGTTTCATAATGGTCATTTAGGATTGACGAAGGCCGACATGCTTTATCCCAGAAAAAGGAAAGGTGTC
AAGAAGCAAGCTAGTCCGAACTTTAAGCCGGCAGGTAAATCTATCGAAGAACGTCCTGACGTTATTAATCTTCGCTTGGAAAATGGTCATTATGAAATTG
ATACCGTCCTACTGACTAAGATAAAAAATTATTGCCTGTTAGTCTTAACCGACCGGCGGAGCAGACACCAAATTATAAGGTTAATTCCAAATAAAACTGC
TGAATCTGTCAATCAGGCGCTTACGTTACTATTAGGGGAGCATCGTATTCTGTCCATTACTGCAGATAATGGTTCGGAGTTCAAACGATTGTCTGAGGTA
TTTCCTGAGGAACATATCTACTACGCACATGCTTACTCTTCATGGGAGAGAGGTTCAAATGAAAATCATAATCGATTAATTCGGAGATGGTTACCTAAAG
GAACCAAGAAAACGACTCCGAAAGAAGTAGCTTTTATCGAAAATTGGATTAACAACTACCCTAAAAAATGCTTGGACTACAAGTCGCCAAGTGAATTTCT
TTTGGGTGGCTAACTTCAACTTGAAATTTGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 260 | 1213 | + | No |
Chemistry : DDE
ORF sequence :
MQEHYTPKGKHLTIDNRRLIERWKNENKSNREIAGLLGKAPQTIHNEVKRGTTLQQVRKGLYKKVYSADYAQTVYQFNRKRSVKKLILTKEIREKILHYH
KQKFSPEMMVNKKQVKVGISTIYYWFHNGHLGLTKADMLYPRKRKGVKKQASPNFKPAGKSIEERPDVINLRLENGHYEIDTVLLTKIKNYCLLVLTDRR
SRHQIIRLIPNKTAESVNQALTLLLGEHRILSITADNGSEFKRLSEVFPEEHIYYAHAYSSWERGSNENHNRLIRRWLPKGTKKTTPKEVAFIENWINNY
PKKCLDYKSPSEFLLGG
KQKFSPEMMVNKKQVKVGISTIYYWFHNGHLGLTKADMLYPRKRKGVKKQASPNFKPAGKSIEERPDVINLRLENGHYEIDTVLLTKIKNYCLLVLTDRR
SRHQIIRLIPNKTAESVNQALTLLLGEHRILSITADNGSEFKRLSEVFPEEHIYYAHAYSSWERGSNENHNRLIRRWLPKGTKKTTPKEVAFIENWINNY
PKKCLDYKSPSEFLLGG
Blast result :
Comments
ISSpn8 sequenced at the capsule locus of a non-typeable (non-encapsulated) isolate of Streptococcus pneumoniae. ISSpn8 responsible for disrupting wchA gene of serotype 14 capsule biosynthesis operon.
ISSpn8 is 80% aa similar to IS1239.
ISSpn8 is 80% aa similar to IS1239.
References
1] Baldry S. (2010) Direct submission