ISNph22
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1383 bp
Ends
Left end : ACGAAATACAGGAGAAAACTCACGGCTTTAGCCGTGGGATGAATCCGTCACTACTGAATCAAACCACGTTCTAGTAGCAGGCCGACTCCCAATATTTAAG II struct. : No
Right end : GCGGGACGCTGAACGTGAACGGAGGCTATTCTCCTGCCGAGGAATCGGCCAGAACGGGAGTCCACGCTGAATCCCACCGCTTTAGCGGTGGGTAGCTCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CACCTCGGCGAT | TTAT | TCTGGGTGTGC |
DNA sequence
ACGAAATACAGGAGAAAACTCACGGCTTTAGCCGTGGGATGAATCCGTCACTACTGAATCAAACCACGTTCTAGTAGCAGGCCGACTCCCAATATTTAAG
AATCACCCGTTCTACATATAAGATATGGAGGTGCGGCGTACTGTCCCCGTTTCACTCGACGTGGACAGCGACGACGCCGCACTCCTCGAAGACACCGTAG
ACACGTTCCTCTGGTCGGCACAGTACGTCGTTGACCACGCTTTCGAAGGCGAGTACGTCACCACCAGCAAGACCACGCTAGATGACGAAACCTACGACGA
CGTGCGCGAGAAGACAGACGAGTTCAACGGTGGACTGGTGCAAGCCGCTCGGAACAAGGCCGCTGAAGCCTGCAAAAGCGTCGTCGCACGCTGGAAGAAC
GATAAGAAAGCGTCGAAACCGACGTTCACCAGCCCACACGTCGTCTACGACCACCGCACCGCCACATTCCACGACGACTACGTGAGCCTCGCCACCACGG
ACGGACGCATCGAAGCCGACTACGTACTGCCCGACGAGGATAGTGACACGCCGCACTCGGAGTACCTGTTTTCGGACGAGTACGAAACCACGGGTGCGGA
ACTACACTCCCACGACGGCGACTGGGTGCTTCACGTCCACTGCAAGAAGGAGGTGGAGTCCGACACGTCGGAACAGCCAACCACCGAGAACGGAACGGTT
CTCGGGGTTGACCTCGGCGTGAACAACCTCGCCGTCGCCTCGACGGGCACGTTCTGGACGGGCGACGAGTTCGACCACTGGCGGCGTGAGTACGAAAAGC
GTCGTGGCTCGCTCCAACAGTGCGGAACGCGCTGGGCGCACGAGAACATCCAGTCAGTCGGACGGAAAGAAGAAGGGCGGTTCAAACAGATGCTCCATCG
CATCAGCAACGAACTCGTCTCTGAAGCTCGTGAGAACGAGTGTTCAGTGATTGCGTTCGAGGATTTAACCGACATTCGTGAGCGGACTGGTGCGTCGTGG
GGCCACAAGTGGGCGTTCAACCGACTCTACGACTACGTTGAGTACAAGGCTGAAGAATACGGCATCTCTGTGGAGCAAGTTGACCCTGAGAACACGAGTC
GGCGTTGCTCACACTGTGGGTTCACCCATCCCGACAACCGTGACGACGAGGACTTCGAGTGCCTAAAGTGCGGGTACGAGAATCACGCCGACTACAACGC
TGCGAAGAACATCGGGTTACGGTATCTCCGTCGGAACCAAACTGGGGGCGACGGAGGCGCACCCTTGGGCGTGCGCTTGAACAGCGGGACGCTGAACGTG
AACGGAGGCTATTCTCCTGCCGAGGAATCGGCCAGAACGGGAGTCCACGCTGAATCCCACCGCTTTAGCGGTGGGTAGCTCAA
AATCACCCGTTCTACATATAAGATATGGAGGTGCGGCGTACTGTCCCCGTTTCACTCGACGTGGACAGCGACGACGCCGCACTCCTCGAAGACACCGTAG
ACACGTTCCTCTGGTCGGCACAGTACGTCGTTGACCACGCTTTCGAAGGCGAGTACGTCACCACCAGCAAGACCACGCTAGATGACGAAACCTACGACGA
CGTGCGCGAGAAGACAGACGAGTTCAACGGTGGACTGGTGCAAGCCGCTCGGAACAAGGCCGCTGAAGCCTGCAAAAGCGTCGTCGCACGCTGGAAGAAC
GATAAGAAAGCGTCGAAACCGACGTTCACCAGCCCACACGTCGTCTACGACCACCGCACCGCCACATTCCACGACGACTACGTGAGCCTCGCCACCACGG
ACGGACGCATCGAAGCCGACTACGTACTGCCCGACGAGGATAGTGACACGCCGCACTCGGAGTACCTGTTTTCGGACGAGTACGAAACCACGGGTGCGGA
ACTACACTCCCACGACGGCGACTGGGTGCTTCACGTCCACTGCAAGAAGGAGGTGGAGTCCGACACGTCGGAACAGCCAACCACCGAGAACGGAACGGTT
CTCGGGGTTGACCTCGGCGTGAACAACCTCGCCGTCGCCTCGACGGGCACGTTCTGGACGGGCGACGAGTTCGACCACTGGCGGCGTGAGTACGAAAAGC
GTCGTGGCTCGCTCCAACAGTGCGGAACGCGCTGGGCGCACGAGAACATCCAGTCAGTCGGACGGAAAGAAGAAGGGCGGTTCAAACAGATGCTCCATCG
CATCAGCAACGAACTCGTCTCTGAAGCTCGTGAGAACGAGTGTTCAGTGATTGCGTTCGAGGATTTAACCGACATTCGTGAGCGGACTGGTGCGTCGTGG
GGCCACAAGTGGGCGTTCAACCGACTCTACGACTACGTTGAGTACAAGGCTGAAGAATACGGCATCTCTGTGGAGCAAGTTGACCCTGAGAACACGAGTC
GGCGTTGCTCACACTGTGGGTTCACCCATCCCGACAACCGTGACGACGAGGACTTCGAGTGCCTAAAGTGCGGGTACGAGAATCACGCCGACTACAACGC
TGCGAAGAACATCGGGTTACGGTATCTCCGTCGGAACCAAACTGGGGGCGACGGAGGCGCACCCTTGGGCGTGCGCTTGAACAGCGGGACGCTGAACGTG
AACGGAGGCTATTCTCCTGCCGAGGAATCGGCCAGAACGGGAGTCCACGCTGAATCCCACCGCTTTAGCGGTGGGTAGCTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 125 | 1378 | + | No |
AG : TnpB
ORF sequence :
MEVRRTVPVSLDVDSDDAALLEDTVDTFLWSAQYVVDHAFEGEYVTTSKTTLDDETYDDVREKTDEFNGGLVQAARNKAAEACKSVVARWKNDKKASKPT
FTSPHVVYDHRTATFHDDYVSLATTDGRIEADYVLPDEDSDTPHSEYLFSDEYETTGAELHSHDGDWVLHVHCKKEVESDTSEQPTTENGTVLGVDLGVN
NLAVASTGTFWTGDEFDHWRREYEKRRGSLQQCGTRWAHENIQSVGRKEEGRFKQMLHRISNELVSEARENECSVIAFEDLTDIRERTGASWGHKWAFNR
LYDYVEYKAEEYGISVEQVDPENTSRRCSHCGFTHPDNRDDEDFECLKCGYENHADYNAAKNIGLRYLRRNQTGGDGGAPLGVRLNSGTLNVNGGYSPAE
ESARTGVHAESHRFSGG
FTSPHVVYDHRTATFHDDYVSLATTDGRIEADYVLPDEDSDTPHSEYLFSDEYETTGAELHSHDGDWVLHVHCKKEVESDTSEQPTTENGTVLGVDLGVN
NLAVASTGTFWTGDEFDHWRREYEKRRGSLQQCGTRWAHENIQSVGRKEEGRFKQMLHRISNELVSEARENECSVIAFEDLTDIRERTGASWGHKWAFNR
LYDYVEYKAEEYGISVEQVDPENTSRRCSHCGFTHPDNRDDEDFECLKCGYENHADYNAAKNIGLRYLRRNQTGGDGGAPLGVRLNSGTLNVNGGYSPAE
ESARTGVHAESHRFSGG
Blast result :
Comments
ISNph22 is 81% (ORFB) aa similar to ISNph16.
References
1] ISfinder annotation (2010)
2] Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J. and Oesterhelt,D. (2005) Genome Res. 15 (10), 1336-1343.
2] Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J. and Oesterhelt,D. (2005) Genome Res. 15 (10), 1336-1343.