ISNph22

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1383 bp

Ends


Left end : ACGAAATACAGGAGAAAACTCACGGCTTTAGCCGTGGGATGAATCCGTCACTACTGAATCAAACCACGTTCTAGTAGCAGGCCGACTCCCAATATTTAAG II struct. : No
Right end : GCGGGACGCTGAACGTGAACGGAGGCTATTCTCCTGCCGAGGAATCGGCCAGAACGGGAGTCCACGCTGAATCCCACCGCTTTAGCGGTGGGTAGCTCAA II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CACCTCGGCGATTTATTCTGGGTGTGC

DNA sequence

ACGAAATACAGGAGAAAACTCACGGCTTTAGCCGTGGGATGAATCCGTCACTACTGAATCAAACCACGTTCTAGTAGCAGGCCGACTCCCAATATTTAAG
AATCACCCGTTCTACATATAAGATATGGAGGTGCGGCGTACTGTCCCCGTTTCACTCGACGTGGACAGCGACGACGCCGCACTCCTCGAAGACACCGTAG
ACACGTTCCTCTGGTCGGCACAGTACGTCGTTGACCACGCTTTCGAAGGCGAGTACGTCACCACCAGCAAGACCACGCTAGATGACGAAACCTACGACGA
CGTGCGCGAGAAGACAGACGAGTTCAACGGTGGACTGGTGCAAGCCGCTCGGAACAAGGCCGCTGAAGCCTGCAAAAGCGTCGTCGCACGCTGGAAGAAC
GATAAGAAAGCGTCGAAACCGACGTTCACCAGCCCACACGTCGTCTACGACCACCGCACCGCCACATTCCACGACGACTACGTGAGCCTCGCCACCACGG
ACGGACGCATCGAAGCCGACTACGTACTGCCCGACGAGGATAGTGACACGCCGCACTCGGAGTACCTGTTTTCGGACGAGTACGAAACCACGGGTGCGGA
ACTACACTCCCACGACGGCGACTGGGTGCTTCACGTCCACTGCAAGAAGGAGGTGGAGTCCGACACGTCGGAACAGCCAACCACCGAGAACGGAACGGTT
CTCGGGGTTGACCTCGGCGTGAACAACCTCGCCGTCGCCTCGACGGGCACGTTCTGGACGGGCGACGAGTTCGACCACTGGCGGCGTGAGTACGAAAAGC
GTCGTGGCTCGCTCCAACAGTGCGGAACGCGCTGGGCGCACGAGAACATCCAGTCAGTCGGACGGAAAGAAGAAGGGCGGTTCAAACAGATGCTCCATCG
CATCAGCAACGAACTCGTCTCTGAAGCTCGTGAGAACGAGTGTTCAGTGATTGCGTTCGAGGATTTAACCGACATTCGTGAGCGGACTGGTGCGTCGTGG
GGCCACAAGTGGGCGTTCAACCGACTCTACGACTACGTTGAGTACAAGGCTGAAGAATACGGCATCTCTGTGGAGCAAGTTGACCCTGAGAACACGAGTC
GGCGTTGCTCACACTGTGGGTTCACCCATCCCGACAACCGTGACGACGAGGACTTCGAGTGCCTAAAGTGCGGGTACGAGAATCACGCCGACTACAACGC
TGCGAAGAACATCGGGTTACGGTATCTCCGTCGGAACCAAACTGGGGGCGACGGAGGCGCACCCTTGGGCGTGCGCTTGAACAGCGGGACGCTGAACGTG
AACGGAGGCTATTCTCCTGCCGAGGAATCGGCCAGAACGGGAGTCCACGCTGAATCCCACCGCTTTAGCGGTGGGTAGCTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa1251378+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVRRTVPVSLDVDSDDAALLEDTVDTFLWSAQYVVDHAFEGEYVTTSKTTLDDETYDDVREKTDEFNGGLVQAARNKAAEACKSVVARWKNDKKASKPT
FTSPHVVYDHRTATFHDDYVSLATTDGRIEADYVLPDEDSDTPHSEYLFSDEYETTGAELHSHDGDWVLHVHCKKEVESDTSEQPTTENGTVLGVDLGVN
NLAVASTGTFWTGDEFDHWRREYEKRRGSLQQCGTRWAHENIQSVGRKEEGRFKQMLHRISNELVSEARENECSVIAFEDLTDIRERTGASWGHKWAFNR
LYDYVEYKAEEYGISVEQVDPENTSRRCSHCGFTHPDNRDDEDFECLKCGYENHADYNAAKNIGLRYLRRNQTGGDGGAPLGVRLNSGTLNVNGGYSPAE
ESARTGVHAESHRFSGG

 

Blast result :
Comments
ISNph22 is 81% (ORFB) aa similar to ISNph16.
References
1] ISfinder annotation (2010)
2] Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J. and Oesterhelt,D. (2005) Genome Res. 15 (10), 1336-1343.