ISNph16

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1516 bp

Ends


Left end : CAGTTTCGAGGCGGAGCCTCCGGCCTCAAGGAGCGAGGACTTCCGACGCCAGTCGGAAGGACGACGCGAGTAGGCCGGGGAGGACAGCGTGGAGCGGAGC II struct. : No
Right end : TCCTGCCGGGGAGTCCGGCCAGAGCGGGAGTCCACGCGAAAGCCCCACCCTCAACGAAGCGAACGGCGAAGCCGTGAGCGAGTAGGGTGGGGTAGTTTAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AGCGTCTGTCTCAGTCGGCAAAAT

DNA sequence

CAGTTTCGAGGCGGAGCCTCCGGCCTCAAGGAGCGAGGACTTCCGACGCCAGTCGGAAGGACGACGCGAGTAGGCCGGGGAGGACAGCGTGGAGCGGAGC
TCCACGGGCCGTGCGAGCGGGCCTGCGGCCCGCGCGCAGAAGCCGACACCCCCGGCACAGACCACGGACCGTAGCCGCCCTTTCTCCCCGACGTTAATAA
ACCACCGGCCATACATCTGACGTATGGAGGTGCGGCGCACTGTTCCAGTCAAACTCGACTTGGACAGCGACGACGCCGCGCTTCTCCGCGAAACCGTTGG
CGAGTTTTTGTGGGCCGCGAACTACGTTGTTGACCACGCTTGGCAGGGCGAATACAAGACGACCAGCAAGGCCCAGTTGCAGGAGGAAACCTACGACGAG
GTACGCGAACAGACGCGGTTACACGCGAATCTCGTCCAGAACGCTCGCAACAAGGCCGCCGACGCCGTACAGGGGGCCGTCGCTCGCTGGAAGCAAGGCG
AGTACGCAGGAAAGCCACACTTCTCGCAACCGACTGTCGTCTACGACAAGCGGTGTGCGACCTTCCACGACGAGTCCGTGTCGCTGGCAACCGTTGATGG
GCGTATCGAAGTCGAGTACGTCCTACCAGACGGCGACCGCGATACACCTCACAGCCGGTATCTCGACAACGACGACTACGAGGTGACGGGCGCGGAACTC
CACAACAAGGACGGCGAGTGGTTCCTTCATCTCCGCACAAAGGCGGAGATGGAGTCGGACACGCCGGAACAGGCAACGACCGGGCACAGCACAGTCCTCG
GCGTTGACCTCGGCGTGAACCAACTCGCCGTCACTTCGACAGGGAGGTTCTGGAGTGGTCACGAGTTCGACCACTGGCGACGGGAGTACGAAAAGCGGCG
GGCGTCACTCCAGCAGTGTGGGTCGCGCCACGCCCACGAGAACATCCAGTCTATCGGTCGCACAGAGACGGGTCGGTTCAAGATGATGCTCCACCGGATT
GCGAACGGCATCATCGAGGAAGCCGTCGAGAACGATTGTACGGTCATCGCCTTCGAGGAGTTGACCGGCATCCGCGACCGGCTCTCCGGTGCCTCGTGGG
GACACAAGTGGGCCTTCGAGCGGTTGTACGAGTACGTCGAATACAAATCCGAACTCTACGGTATCGACGTGGAGCAGGTGGACCCGGAGAATACGTCACG
CCGTTGCTCACACTGTGGGTTCACCCACCCTGACAACCGCGACGGCGAGGGTTTCGAGTGTCTGAAATGCGGCTACGAGAACCACGCCGACTACAACGCG
GCGAAAAATATAGGCTTGCGGTATCTCCGCCGTAACCAAACTGGGGACGGCGGAGGCGCACCCGTAGGCGTGCGCTTGAATCGCGGGATGGTGAACGCGA
ATGGAGTGTATGAACCTCCTGCCGGGGAGTCCGGCCAGAGCGGGAGTCCACGCGAAAGCCCCACCCTCAACGAAGCGAACGGCGAAGCCGTGAGCGAGTA
GGGTGGGGTAGTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1278 bp425 aa2241501+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVRRTVPVKLDLDSDDAALLRETVGEFLWAANYVVDHAWQGEYKTTSKAQLQEETYDEVREQTRLHANLVQNARNKAADAVQGAVARWKQGEYAGKPHF
SQPTVVYDKRCATFHDESVSLATVDGRIEVEYVLPDGDRDTPHSRYLDNDDYEVTGAELHNKDGEWFLHLRTKAEMESDTPEQATTGHSTVLGVDLGVNQ
LAVTSTGRFWSGHEFDHWRREYEKRRASLQQCGSRHAHENIQSIGRTETGRFKMMLHRIANGIIEEAVENDCTVIAFEELTGIRDRLSGASWGHKWAFER
LYEYVEYKSELYGIDVEQVDPENTSRRCSHCGFTHPDNRDGEGFECLKCGYENHADYNAAKNIGLRYLRRNQTGDGGGAPVGVRLNRGMVNANGVYEPPA
GESGQSGSPRESPTLNEANGEAVSE

 

Blast result :
Comments
ISNph16 is 43% (ORFB) aa similar to ISDge19.
Updated : April 10 2015 : the sequence was extended on the left side (+23 nt).
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343