ISNph16
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1516 bp
Ends
Left end : CAGTTTCGAGGCGGAGCCTCCGGCCTCAAGGAGCGAGGACTTCCGACGCCAGTCGGAAGGACGACGCGAGTAGGCCGGGGAGGACAGCGTGGAGCGGAGC II struct. : No
Right end : TCCTGCCGGGGAGTCCGGCCAGAGCGGGAGTCCACGCGAAAGCCCCACCCTCAACGAAGCGAACGGCGAAGCCGTGAGCGAGTAGGGTGGGGTAGTTTAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AGCGTCTGTC | TCAG | TCGGCAAAAT |
DNA sequence
CAGTTTCGAGGCGGAGCCTCCGGCCTCAAGGAGCGAGGACTTCCGACGCCAGTCGGAAGGACGACGCGAGTAGGCCGGGGAGGACAGCGTGGAGCGGAGC
TCCACGGGCCGTGCGAGCGGGCCTGCGGCCCGCGCGCAGAAGCCGACACCCCCGGCACAGACCACGGACCGTAGCCGCCCTTTCTCCCCGACGTTAATAA
ACCACCGGCCATACATCTGACGTATGGAGGTGCGGCGCACTGTTCCAGTCAAACTCGACTTGGACAGCGACGACGCCGCGCTTCTCCGCGAAACCGTTGG
CGAGTTTTTGTGGGCCGCGAACTACGTTGTTGACCACGCTTGGCAGGGCGAATACAAGACGACCAGCAAGGCCCAGTTGCAGGAGGAAACCTACGACGAG
GTACGCGAACAGACGCGGTTACACGCGAATCTCGTCCAGAACGCTCGCAACAAGGCCGCCGACGCCGTACAGGGGGCCGTCGCTCGCTGGAAGCAAGGCG
AGTACGCAGGAAAGCCACACTTCTCGCAACCGACTGTCGTCTACGACAAGCGGTGTGCGACCTTCCACGACGAGTCCGTGTCGCTGGCAACCGTTGATGG
GCGTATCGAAGTCGAGTACGTCCTACCAGACGGCGACCGCGATACACCTCACAGCCGGTATCTCGACAACGACGACTACGAGGTGACGGGCGCGGAACTC
CACAACAAGGACGGCGAGTGGTTCCTTCATCTCCGCACAAAGGCGGAGATGGAGTCGGACACGCCGGAACAGGCAACGACCGGGCACAGCACAGTCCTCG
GCGTTGACCTCGGCGTGAACCAACTCGCCGTCACTTCGACAGGGAGGTTCTGGAGTGGTCACGAGTTCGACCACTGGCGACGGGAGTACGAAAAGCGGCG
GGCGTCACTCCAGCAGTGTGGGTCGCGCCACGCCCACGAGAACATCCAGTCTATCGGTCGCACAGAGACGGGTCGGTTCAAGATGATGCTCCACCGGATT
GCGAACGGCATCATCGAGGAAGCCGTCGAGAACGATTGTACGGTCATCGCCTTCGAGGAGTTGACCGGCATCCGCGACCGGCTCTCCGGTGCCTCGTGGG
GACACAAGTGGGCCTTCGAGCGGTTGTACGAGTACGTCGAATACAAATCCGAACTCTACGGTATCGACGTGGAGCAGGTGGACCCGGAGAATACGTCACG
CCGTTGCTCACACTGTGGGTTCACCCACCCTGACAACCGCGACGGCGAGGGTTTCGAGTGTCTGAAATGCGGCTACGAGAACCACGCCGACTACAACGCG
GCGAAAAATATAGGCTTGCGGTATCTCCGCCGTAACCAAACTGGGGACGGCGGAGGCGCACCCGTAGGCGTGCGCTTGAATCGCGGGATGGTGAACGCGA
ATGGAGTGTATGAACCTCCTGCCGGGGAGTCCGGCCAGAGCGGGAGTCCACGCGAAAGCCCCACCCTCAACGAAGCGAACGGCGAAGCCGTGAGCGAGTA
GGGTGGGGTAGTTTAC
TCCACGGGCCGTGCGAGCGGGCCTGCGGCCCGCGCGCAGAAGCCGACACCCCCGGCACAGACCACGGACCGTAGCCGCCCTTTCTCCCCGACGTTAATAA
ACCACCGGCCATACATCTGACGTATGGAGGTGCGGCGCACTGTTCCAGTCAAACTCGACTTGGACAGCGACGACGCCGCGCTTCTCCGCGAAACCGTTGG
CGAGTTTTTGTGGGCCGCGAACTACGTTGTTGACCACGCTTGGCAGGGCGAATACAAGACGACCAGCAAGGCCCAGTTGCAGGAGGAAACCTACGACGAG
GTACGCGAACAGACGCGGTTACACGCGAATCTCGTCCAGAACGCTCGCAACAAGGCCGCCGACGCCGTACAGGGGGCCGTCGCTCGCTGGAAGCAAGGCG
AGTACGCAGGAAAGCCACACTTCTCGCAACCGACTGTCGTCTACGACAAGCGGTGTGCGACCTTCCACGACGAGTCCGTGTCGCTGGCAACCGTTGATGG
GCGTATCGAAGTCGAGTACGTCCTACCAGACGGCGACCGCGATACACCTCACAGCCGGTATCTCGACAACGACGACTACGAGGTGACGGGCGCGGAACTC
CACAACAAGGACGGCGAGTGGTTCCTTCATCTCCGCACAAAGGCGGAGATGGAGTCGGACACGCCGGAACAGGCAACGACCGGGCACAGCACAGTCCTCG
GCGTTGACCTCGGCGTGAACCAACTCGCCGTCACTTCGACAGGGAGGTTCTGGAGTGGTCACGAGTTCGACCACTGGCGACGGGAGTACGAAAAGCGGCG
GGCGTCACTCCAGCAGTGTGGGTCGCGCCACGCCCACGAGAACATCCAGTCTATCGGTCGCACAGAGACGGGTCGGTTCAAGATGATGCTCCACCGGATT
GCGAACGGCATCATCGAGGAAGCCGTCGAGAACGATTGTACGGTCATCGCCTTCGAGGAGTTGACCGGCATCCGCGACCGGCTCTCCGGTGCCTCGTGGG
GACACAAGTGGGCCTTCGAGCGGTTGTACGAGTACGTCGAATACAAATCCGAACTCTACGGTATCGACGTGGAGCAGGTGGACCCGGAGAATACGTCACG
CCGTTGCTCACACTGTGGGTTCACCCACCCTGACAACCGCGACGGCGAGGGTTTCGAGTGTCTGAAATGCGGCTACGAGAACCACGCCGACTACAACGCG
GCGAAAAATATAGGCTTGCGGTATCTCCGCCGTAACCAAACTGGGGACGGCGGAGGCGCACCCGTAGGCGTGCGCTTGAATCGCGGGATGGTGAACGCGA
ATGGAGTGTATGAACCTCCTGCCGGGGAGTCCGGCCAGAGCGGGAGTCCACGCGAAAGCCCCACCCTCAACGAAGCGAACGGCGAAGCCGTGAGCGAGTA
GGGTGGGGTAGTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1278 bp | 425 aa | 224 | 1501 | + | No |
AG : TnpB
ORF sequence :
MEVRRTVPVKLDLDSDDAALLRETVGEFLWAANYVVDHAWQGEYKTTSKAQLQEETYDEVREQTRLHANLVQNARNKAADAVQGAVARWKQGEYAGKPHF
SQPTVVYDKRCATFHDESVSLATVDGRIEVEYVLPDGDRDTPHSRYLDNDDYEVTGAELHNKDGEWFLHLRTKAEMESDTPEQATTGHSTVLGVDLGVNQ
LAVTSTGRFWSGHEFDHWRREYEKRRASLQQCGSRHAHENIQSIGRTETGRFKMMLHRIANGIIEEAVENDCTVIAFEELTGIRDRLSGASWGHKWAFER
LYEYVEYKSELYGIDVEQVDPENTSRRCSHCGFTHPDNRDGEGFECLKCGYENHADYNAAKNIGLRYLRRNQTGDGGGAPVGVRLNRGMVNANGVYEPPA
GESGQSGSPRESPTLNEANGEAVSE
SQPTVVYDKRCATFHDESVSLATVDGRIEVEYVLPDGDRDTPHSRYLDNDDYEVTGAELHNKDGEWFLHLRTKAEMESDTPEQATTGHSTVLGVDLGVNQ
LAVTSTGRFWSGHEFDHWRREYEKRRASLQQCGSRHAHENIQSIGRTETGRFKMMLHRIANGIIEEAVENDCTVIAFEELTGIRDRLSGASWGHKWAFER
LYEYVEYKSELYGIDVEQVDPENTSRRCSHCGFTHPDNRDGEGFECLKCGYENHADYNAAKNIGLRYLRRNQTGDGGGAPVGVRLNRGMVNANGVYEPPA
GESGQSGSPRESPTLNEANGEAVSE
Blast result :
Comments
ISNph16 is 43% (ORFB) aa similar to ISDge19.
Updated : April 10 2015 : the sequence was extended on the left side (+23 nt).
Updated : April 10 2015 : the sequence was extended on the left side (+23 nt).
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343