ISNph21

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1518 bp

Ends


Left end : CGAATACGAGGTGGAGGCTCCACCCTCAAGGAGCGCCGGGCTTCCGGCCTCGGCGGAAGCACAAGCGAGTAGGGTGGGGAGGACAGCGAGGGATCGAAGA II struct. : Yes
Right end : GCCTCTTCCGAGGCGTAGAACGGGAGTCCACGCGAAAGCCCCACCCTCAACGAGCGAGCGGGGCCATAGCCCCCGAGCGAAGTAGGGTAGGGTGGTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCGAGGGATGTCACTGCTGGGCTGttac

DNA sequence

CGAATACGAGGTGGAGGCTCCACCCTCAAGGAGCGCCGGGCTTCCGGCCTCGGCGGAAGCACAAGCGAGTAGGGTGGGGAGGACAGCGAGGGATCGAAGA
TCCCTCGGGCCGTGCGAACGGGCCGCAGGCCCGTGAGCAGAAGCCGACACGGTACTGACCAGCCACCAGATTGTCGCCTGCCAACTCCCAATCATTAAGT
AACTACAAGCGCATATGTGAAAAGACAGTGGAATACCGTCGTACCGCCGTTATCAAGCTCGACACACCCGAAGGCGCAGATACGCACCTTCGAGAGACTG
TCGAGCAATTCAAATACTGCGCCAACACCGCGAGTGAGTGGTGCTGGCACGGCGATGACGGCTACCACGTCACTTCGAAAGCGAAGGCCGAACGCGCCCT
CTACGACCAGCTACGTGAGGACACGGAGCTGACCGCAAATCTTGTCCAGAAGGGGATTCGCCAAGCCGTCGAATCCGTCAAAAGCGGCGTCGAACGTCTC
AAAAACGACCCAGATACGTCTCGTCCGACGTTCACGGCGGATACTGCCGTCTACGACAAGCGAAGCGCAACGTTCCATCGTGACCACGCTTCGCTCTCAA
CACCGGACGGACGGATTGAGTGCGACTACATTCTACCTGACGATGCCGATACACCGCCGACAAAGTACGTCACAGACGAAGACTACGAGTTTCGGCGGGC
GACACTCCATCGGCGTGACAGCGACTGGTATCTCCATGCGTCGATGCTCAAAGAGGACGACGACACCGAACCCACTACCGGGCACAGCACAGTCCTCGGT
GTGGACCTCGGTGTGAACCAACTCGCGGTGGCTTCGACCGGACGGTTCTGGTCGGCAGACGAGTTCAACCACTGGAAGCGAGAGTACGAGAAACGGCGTG
GCGACCTCCAACAGTGCGGAACGCGAGCGGCACACGACGCGATAGCAGGCGTCGAGCGCAAGGAGGACGGACGCTTCGAGATATTCCTGCATCGTGTTGC
CAACGAGATCGTCGCAGAAGCAGTCGAACACGACTGTTCGCATATCGTGTTCGAGGATCTGACCGACATTCGTGAGAACGTCCCAGAAGCATCGTGGCAC
CATCTGTGGGCGTTCCGTCGCCTCTACGAGTACGTCGAATACAAAGCCAGAGAGCAGGGCGTCAAAGTCGTGCAAGTGGACCCACGGAACACGTCAAAAC
GGTGTTCGACCTGTGGGTTTACCCACGATGATAACCGCCACGGCGAAGACTTCGAATGTCAGGATTGTGGCTACCAGAACCACGCCGACTACAACGCTTC
CAAGAACATCGGCTTGCAGTATCTCCGGCGTCGGCAAAACGCAGACGACGGAGGCGCACCCGTAGACGTGCGCTTGAATCGCGGGACACTGAACGTGAGT
GGAGAGTACGATCTTCCCGCCTCTTCCGAGGCGTAGAACGGGAGTCCACGCGAAAGCCCCACCCTCAACGAGCGAGCGGGGCCATAGCCCCCGAGCGAAG
TAGGGTAGGGTGGTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa2281436+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEYRRTAVIKLDTPEGADTHLRETVEQFKYCANTASEWCWHGDDGYHVTSKAKAERALYDQLREDTELTANLVQKGIRQAVESVKSGVERLKNDPDTSRP
TFTADTAVYDKRSATFHRDHASLSTPDGRIECDYILPDDADTPPTKYVTDEDYEFRRATLHRRDSDWYLHASMLKEDDDTEPTTGHSTVLGVDLGVNQLA
VASTGRFWSADEFNHWKREYEKRRGDLQQCGTRAAHDAIAGVERKEDGRFEIFLHRVANEIVAEAVEHDCSHIVFEDLTDIRENVPEASWHHLWAFRRLY
EYVEYKAREQGVKVVQVDPRNTSKRCSTCGFTHDDNRHGEDFECQDCGYQNHADYNASKNIGLQYLRRRQNADDGGAPVDVRLNRGTLNVSGEYDLPASS
EA

 

Blast result :
Comments
ISNph21 is 45% (ORFB) aa similar to ISTsi1.
Updated : April 10 2015 : the sequence was extended on the left side (+23 nts).
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343