ISNph21
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1518 bp
Ends
Left end : CGAATACGAGGTGGAGGCTCCACCCTCAAGGAGCGCCGGGCTTCCGGCCTCGGCGGAAGCACAAGCGAGTAGGGTGGGGAGGACAGCGAGGGATCGAAGA II struct. : Yes
Right end : GCCTCTTCCGAGGCGTAGAACGGGAGTCCACGCGAAAGCCCCACCCTCAACGAGCGAGCGGGGCCATAGCCCCCGAGCGAAGTAGGGTAGGGTGGTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCGAGGGATG | TCAC | TGCTGGGCTG | ttac |
DNA sequence
CGAATACGAGGTGGAGGCTCCACCCTCAAGGAGCGCCGGGCTTCCGGCCTCGGCGGAAGCACAAGCGAGTAGGGTGGGGAGGACAGCGAGGGATCGAAGA
TCCCTCGGGCCGTGCGAACGGGCCGCAGGCCCGTGAGCAGAAGCCGACACGGTACTGACCAGCCACCAGATTGTCGCCTGCCAACTCCCAATCATTAAGT
AACTACAAGCGCATATGTGAAAAGACAGTGGAATACCGTCGTACCGCCGTTATCAAGCTCGACACACCCGAAGGCGCAGATACGCACCTTCGAGAGACTG
TCGAGCAATTCAAATACTGCGCCAACACCGCGAGTGAGTGGTGCTGGCACGGCGATGACGGCTACCACGTCACTTCGAAAGCGAAGGCCGAACGCGCCCT
CTACGACCAGCTACGTGAGGACACGGAGCTGACCGCAAATCTTGTCCAGAAGGGGATTCGCCAAGCCGTCGAATCCGTCAAAAGCGGCGTCGAACGTCTC
AAAAACGACCCAGATACGTCTCGTCCGACGTTCACGGCGGATACTGCCGTCTACGACAAGCGAAGCGCAACGTTCCATCGTGACCACGCTTCGCTCTCAA
CACCGGACGGACGGATTGAGTGCGACTACATTCTACCTGACGATGCCGATACACCGCCGACAAAGTACGTCACAGACGAAGACTACGAGTTTCGGCGGGC
GACACTCCATCGGCGTGACAGCGACTGGTATCTCCATGCGTCGATGCTCAAAGAGGACGACGACACCGAACCCACTACCGGGCACAGCACAGTCCTCGGT
GTGGACCTCGGTGTGAACCAACTCGCGGTGGCTTCGACCGGACGGTTCTGGTCGGCAGACGAGTTCAACCACTGGAAGCGAGAGTACGAGAAACGGCGTG
GCGACCTCCAACAGTGCGGAACGCGAGCGGCACACGACGCGATAGCAGGCGTCGAGCGCAAGGAGGACGGACGCTTCGAGATATTCCTGCATCGTGTTGC
CAACGAGATCGTCGCAGAAGCAGTCGAACACGACTGTTCGCATATCGTGTTCGAGGATCTGACCGACATTCGTGAGAACGTCCCAGAAGCATCGTGGCAC
CATCTGTGGGCGTTCCGTCGCCTCTACGAGTACGTCGAATACAAAGCCAGAGAGCAGGGCGTCAAAGTCGTGCAAGTGGACCCACGGAACACGTCAAAAC
GGTGTTCGACCTGTGGGTTTACCCACGATGATAACCGCCACGGCGAAGACTTCGAATGTCAGGATTGTGGCTACCAGAACCACGCCGACTACAACGCTTC
CAAGAACATCGGCTTGCAGTATCTCCGGCGTCGGCAAAACGCAGACGACGGAGGCGCACCCGTAGACGTGCGCTTGAATCGCGGGACACTGAACGTGAGT
GGAGAGTACGATCTTCCCGCCTCTTCCGAGGCGTAGAACGGGAGTCCACGCGAAAGCCCCACCCTCAACGAGCGAGCGGGGCCATAGCCCCCGAGCGAAG
TAGGGTAGGGTGGTTTAC
TCCCTCGGGCCGTGCGAACGGGCCGCAGGCCCGTGAGCAGAAGCCGACACGGTACTGACCAGCCACCAGATTGTCGCCTGCCAACTCCCAATCATTAAGT
AACTACAAGCGCATATGTGAAAAGACAGTGGAATACCGTCGTACCGCCGTTATCAAGCTCGACACACCCGAAGGCGCAGATACGCACCTTCGAGAGACTG
TCGAGCAATTCAAATACTGCGCCAACACCGCGAGTGAGTGGTGCTGGCACGGCGATGACGGCTACCACGTCACTTCGAAAGCGAAGGCCGAACGCGCCCT
CTACGACCAGCTACGTGAGGACACGGAGCTGACCGCAAATCTTGTCCAGAAGGGGATTCGCCAAGCCGTCGAATCCGTCAAAAGCGGCGTCGAACGTCTC
AAAAACGACCCAGATACGTCTCGTCCGACGTTCACGGCGGATACTGCCGTCTACGACAAGCGAAGCGCAACGTTCCATCGTGACCACGCTTCGCTCTCAA
CACCGGACGGACGGATTGAGTGCGACTACATTCTACCTGACGATGCCGATACACCGCCGACAAAGTACGTCACAGACGAAGACTACGAGTTTCGGCGGGC
GACACTCCATCGGCGTGACAGCGACTGGTATCTCCATGCGTCGATGCTCAAAGAGGACGACGACACCGAACCCACTACCGGGCACAGCACAGTCCTCGGT
GTGGACCTCGGTGTGAACCAACTCGCGGTGGCTTCGACCGGACGGTTCTGGTCGGCAGACGAGTTCAACCACTGGAAGCGAGAGTACGAGAAACGGCGTG
GCGACCTCCAACAGTGCGGAACGCGAGCGGCACACGACGCGATAGCAGGCGTCGAGCGCAAGGAGGACGGACGCTTCGAGATATTCCTGCATCGTGTTGC
CAACGAGATCGTCGCAGAAGCAGTCGAACACGACTGTTCGCATATCGTGTTCGAGGATCTGACCGACATTCGTGAGAACGTCCCAGAAGCATCGTGGCAC
CATCTGTGGGCGTTCCGTCGCCTCTACGAGTACGTCGAATACAAAGCCAGAGAGCAGGGCGTCAAAGTCGTGCAAGTGGACCCACGGAACACGTCAAAAC
GGTGTTCGACCTGTGGGTTTACCCACGATGATAACCGCCACGGCGAAGACTTCGAATGTCAGGATTGTGGCTACCAGAACCACGCCGACTACAACGCTTC
CAAGAACATCGGCTTGCAGTATCTCCGGCGTCGGCAAAACGCAGACGACGGAGGCGCACCCGTAGACGTGCGCTTGAATCGCGGGACACTGAACGTGAGT
GGAGAGTACGATCTTCCCGCCTCTTCCGAGGCGTAGAACGGGAGTCCACGCGAAAGCCCCACCCTCAACGAGCGAGCGGGGCCATAGCCCCCGAGCGAAG
TAGGGTAGGGTGGTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 228 | 1436 | + | No |
AG : TnpB
ORF sequence :
MEYRRTAVIKLDTPEGADTHLRETVEQFKYCANTASEWCWHGDDGYHVTSKAKAERALYDQLREDTELTANLVQKGIRQAVESVKSGVERLKNDPDTSRP
TFTADTAVYDKRSATFHRDHASLSTPDGRIECDYILPDDADTPPTKYVTDEDYEFRRATLHRRDSDWYLHASMLKEDDDTEPTTGHSTVLGVDLGVNQLA
VASTGRFWSADEFNHWKREYEKRRGDLQQCGTRAAHDAIAGVERKEDGRFEIFLHRVANEIVAEAVEHDCSHIVFEDLTDIRENVPEASWHHLWAFRRLY
EYVEYKAREQGVKVVQVDPRNTSKRCSTCGFTHDDNRHGEDFECQDCGYQNHADYNASKNIGLQYLRRRQNADDGGAPVDVRLNRGTLNVSGEYDLPASS
EA
TFTADTAVYDKRSATFHRDHASLSTPDGRIECDYILPDDADTPPTKYVTDEDYEFRRATLHRRDSDWYLHASMLKEDDDTEPTTGHSTVLGVDLGVNQLA
VASTGRFWSADEFNHWKREYEKRRGDLQQCGTRAAHDAIAGVERKEDGRFEIFLHRVANEIVAEAVEHDCSHIVFEDLTDIRENVPEASWHHLWAFRRLY
EYVEYKAREQGVKVVQVDPRNTSKRCSTCGFTHDDNRHGEDFECQDCGYQNHADYNASKNIGLQYLRRRQNADDGGAPVDVRLNRGTLNVSGEYDLPASS
EA
Blast result :
Comments
ISNph21 is 45% (ORFB) aa similar to ISTsi1.
Updated : April 10 2015 : the sequence was extended on the left side (+23 nts).
Updated : April 10 2015 : the sequence was extended on the left side (+23 nts).
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343