ISNph18

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007427 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160 plasmid PL131
DNA section
IS Length : 1458 bp

Ends


Left end : AGCGGTAGCAAGGCGAAAGCCCACCCGTTTACGGGTGTGGATGAAGCCGACAACTGGGAATCTCTCCACGTTCGTAGCTCTGGCTGGATATTCCACGCCG II struct. : Yes
Right end : AAATCAACGGGGCGAGTCGCCCCACAAGAACAGGTACGACCGTAAACCCTAATATCCCAACGTGGGAATCCCACGGCTTCAGCCGTGTGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGGCGCGCTCTTACTGAAGAGGGCtcaa

DNA sequence

AGCGGTAGCAAGGCGAAAGCCCACCCGTTTACGGGTGTGGATGAAGCCGACAACTGGGAATCTCTCCACGTTCGTAGCTCTGGCTGGATATTCCACGCCG
AGAACCAACATTTATGTAAGAAAAAATACTACGCTTACATATGTCGGATCGGGTCGTCACGCGGACACTCAAAGCGAGTATTCGTAACCACTCGCAAGTC
TGTGACGGCCTCGATTCGCATGGCTTTGCCGCGTCAAAATTGTGGAACGTCGGGCGATGGACGATTTCGCGTGTCTGGGACGCTATCGGCCACATCCCAG
ACGCCGACGAACTCTGTTCGTACCTCAAATCCCACGAACGCTATGCAGACCTACACAGCCAATCTAGTCAGCGAGTTCTTCAGGAACTCGGGGAGGCGTT
CGTCTCGTGGTACGAACAGGACGACCCAGACGCGAATCCACCCGGCTACCGCAAACACGGCGATGACCACCCGCGCTCAACCGTGACGTGGAAAAATCAA
GGCTTCAAACTCGACACCCAGTACAACCGCGTCCGTCTCTCGAAAGGGATGAACATGAAAGAGTCGCGCTACGCCGCTGACTATATCCTCTGTGAATACA
CCCTCCAGACAGACGAGCAGACACTCGACGCTGTTGAGAGCGTCCAGACGGTGCGTGCTGTCTGGACCGGCGAAGAGTGGGAGCTGCATTTCGTCTGCAA
GATGCGGGTTGAGACGCCTGAGACACCCGGTGAGAAGACAGCAGGTGTTGACCTTGGCATCTGTAACACGGCGGCAATCTCTGTCGGTGACGAGACACTG
CTGTATCCTGGCAACTCTTTGAAAGAAGACGCCCACTACTTCCGACAGCAGGAATACGAGACGGAAGGTGAGAATGGTCCCAGCGACCACGCAGAGTGGG
CGCGACAGAAGAAATCCCGGCGGCAAGAACACTTTCTGCACGCCCTCTCGAAAGACATTGTTCAGCAGTGTGCTGACCGAGGTGTTGGGACAATTGCAGT
CGGCCATCCGAAGAACATCCGTGAGGATGAAGACTGGGGACGACACGGCAACAAGCGACTACACGACTGGGCGTTCGAGACGCTTCTCAGCCACATCGAG
TACAAAGCCCAAGAGCGGGGCATCGACGTAGAGCGTGTGGACGAAGCGGGATTGAAAACATCGAAAACCTGCTGTGAGTGTGGGGCGGAAGCTGACTCGA
ACCGAGTCGAGCGTGGGTTGTACGTGTGTGAGAGCTGCGAGTTGGTCGCAAATAGCGACCTGAACGCGGCGGAGAATATGCGAGCGACGGTAACTCCGAA
TCCGACACAGGATAGGAGTAACGGCTGTTTGGCACAGCCATCGGTCCGCCTGTTCGAGAAATCAACGGGGCGAGTCGCCCCACAAGAACAGGTACGACCG
TAAACCCTAATATCCCAACGTGGGAATCCCACGGCTTCAGCCGTGTGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1263 bp420 aa1411403+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSDRVVTRTLKASIRNHSQVCDGLDSHGFAASKLWNVGRWTISRVWDAIGHIPDADELCSYLKSHERYADLHSQSSQRVLQELGEAFVSWYEQDDPDANP
PGYRKHGDDHPRSTVTWKNQGFKLDTQYNRVRLSKGMNMKESRYAADYILCEYTLQTDEQTLDAVESVQTVRAVWTGEEWELHFVCKMRVETPETPGEKT
AGVDLGICNTAAISVGDETLLYPGNSLKEDAHYFRQQEYETEGENGPSDHAEWARQKKSRRQEHFLHALSKDIVQQCADRGVGTIAVGHPKNIREDEDWG
RHGNKRLHDWAFETLLSHIEYKAQERGIDVERVDEAGLKTSKTCCECGAEADSNRVERGLYVCESCELVANSDLNAAENMRATVTPNPTQDRSNGCLAQP
SVRLFEKSTGRVAPQEQVRP

 

Blast result :
Comments
ISNph18 is 43% (ORFB) aa similar to ISDka2.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343