ISNph18
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007427 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 plasmid PL131 |
DNA section
IS Length : 1458 bp
Ends
Left end : AGCGGTAGCAAGGCGAAAGCCCACCCGTTTACGGGTGTGGATGAAGCCGACAACTGGGAATCTCTCCACGTTCGTAGCTCTGGCTGGATATTCCACGCCG II struct. : Yes
Right end : AAATCAACGGGGCGAGTCGCCCCACAAGAACAGGTACGACCGTAAACCCTAATATCCCAACGTGGGAATCCCACGGCTTCAGCCGTGTGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGGCGCGCTC | TTAC | TGAAGAGGGC | tcaa |
DNA sequence
AGCGGTAGCAAGGCGAAAGCCCACCCGTTTACGGGTGTGGATGAAGCCGACAACTGGGAATCTCTCCACGTTCGTAGCTCTGGCTGGATATTCCACGCCG
AGAACCAACATTTATGTAAGAAAAAATACTACGCTTACATATGTCGGATCGGGTCGTCACGCGGACACTCAAAGCGAGTATTCGTAACCACTCGCAAGTC
TGTGACGGCCTCGATTCGCATGGCTTTGCCGCGTCAAAATTGTGGAACGTCGGGCGATGGACGATTTCGCGTGTCTGGGACGCTATCGGCCACATCCCAG
ACGCCGACGAACTCTGTTCGTACCTCAAATCCCACGAACGCTATGCAGACCTACACAGCCAATCTAGTCAGCGAGTTCTTCAGGAACTCGGGGAGGCGTT
CGTCTCGTGGTACGAACAGGACGACCCAGACGCGAATCCACCCGGCTACCGCAAACACGGCGATGACCACCCGCGCTCAACCGTGACGTGGAAAAATCAA
GGCTTCAAACTCGACACCCAGTACAACCGCGTCCGTCTCTCGAAAGGGATGAACATGAAAGAGTCGCGCTACGCCGCTGACTATATCCTCTGTGAATACA
CCCTCCAGACAGACGAGCAGACACTCGACGCTGTTGAGAGCGTCCAGACGGTGCGTGCTGTCTGGACCGGCGAAGAGTGGGAGCTGCATTTCGTCTGCAA
GATGCGGGTTGAGACGCCTGAGACACCCGGTGAGAAGACAGCAGGTGTTGACCTTGGCATCTGTAACACGGCGGCAATCTCTGTCGGTGACGAGACACTG
CTGTATCCTGGCAACTCTTTGAAAGAAGACGCCCACTACTTCCGACAGCAGGAATACGAGACGGAAGGTGAGAATGGTCCCAGCGACCACGCAGAGTGGG
CGCGACAGAAGAAATCCCGGCGGCAAGAACACTTTCTGCACGCCCTCTCGAAAGACATTGTTCAGCAGTGTGCTGACCGAGGTGTTGGGACAATTGCAGT
CGGCCATCCGAAGAACATCCGTGAGGATGAAGACTGGGGACGACACGGCAACAAGCGACTACACGACTGGGCGTTCGAGACGCTTCTCAGCCACATCGAG
TACAAAGCCCAAGAGCGGGGCATCGACGTAGAGCGTGTGGACGAAGCGGGATTGAAAACATCGAAAACCTGCTGTGAGTGTGGGGCGGAAGCTGACTCGA
ACCGAGTCGAGCGTGGGTTGTACGTGTGTGAGAGCTGCGAGTTGGTCGCAAATAGCGACCTGAACGCGGCGGAGAATATGCGAGCGACGGTAACTCCGAA
TCCGACACAGGATAGGAGTAACGGCTGTTTGGCACAGCCATCGGTCCGCCTGTTCGAGAAATCAACGGGGCGAGTCGCCCCACAAGAACAGGTACGACCG
TAAACCCTAATATCCCAACGTGGGAATCCCACGGCTTCAGCCGTGTGGAGGATGTCAA
AGAACCAACATTTATGTAAGAAAAAATACTACGCTTACATATGTCGGATCGGGTCGTCACGCGGACACTCAAAGCGAGTATTCGTAACCACTCGCAAGTC
TGTGACGGCCTCGATTCGCATGGCTTTGCCGCGTCAAAATTGTGGAACGTCGGGCGATGGACGATTTCGCGTGTCTGGGACGCTATCGGCCACATCCCAG
ACGCCGACGAACTCTGTTCGTACCTCAAATCCCACGAACGCTATGCAGACCTACACAGCCAATCTAGTCAGCGAGTTCTTCAGGAACTCGGGGAGGCGTT
CGTCTCGTGGTACGAACAGGACGACCCAGACGCGAATCCACCCGGCTACCGCAAACACGGCGATGACCACCCGCGCTCAACCGTGACGTGGAAAAATCAA
GGCTTCAAACTCGACACCCAGTACAACCGCGTCCGTCTCTCGAAAGGGATGAACATGAAAGAGTCGCGCTACGCCGCTGACTATATCCTCTGTGAATACA
CCCTCCAGACAGACGAGCAGACACTCGACGCTGTTGAGAGCGTCCAGACGGTGCGTGCTGTCTGGACCGGCGAAGAGTGGGAGCTGCATTTCGTCTGCAA
GATGCGGGTTGAGACGCCTGAGACACCCGGTGAGAAGACAGCAGGTGTTGACCTTGGCATCTGTAACACGGCGGCAATCTCTGTCGGTGACGAGACACTG
CTGTATCCTGGCAACTCTTTGAAAGAAGACGCCCACTACTTCCGACAGCAGGAATACGAGACGGAAGGTGAGAATGGTCCCAGCGACCACGCAGAGTGGG
CGCGACAGAAGAAATCCCGGCGGCAAGAACACTTTCTGCACGCCCTCTCGAAAGACATTGTTCAGCAGTGTGCTGACCGAGGTGTTGGGACAATTGCAGT
CGGCCATCCGAAGAACATCCGTGAGGATGAAGACTGGGGACGACACGGCAACAAGCGACTACACGACTGGGCGTTCGAGACGCTTCTCAGCCACATCGAG
TACAAAGCCCAAGAGCGGGGCATCGACGTAGAGCGTGTGGACGAAGCGGGATTGAAAACATCGAAAACCTGCTGTGAGTGTGGGGCGGAAGCTGACTCGA
ACCGAGTCGAGCGTGGGTTGTACGTGTGTGAGAGCTGCGAGTTGGTCGCAAATAGCGACCTGAACGCGGCGGAGAATATGCGAGCGACGGTAACTCCGAA
TCCGACACAGGATAGGAGTAACGGCTGTTTGGCACAGCCATCGGTCCGCCTGTTCGAGAAATCAACGGGGCGAGTCGCCCCACAAGAACAGGTACGACCG
TAAACCCTAATATCCCAACGTGGGAATCCCACGGCTTCAGCCGTGTGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1263 bp | 420 aa | 141 | 1403 | + | No |
AG : TnpB
ORF sequence :
MSDRVVTRTLKASIRNHSQVCDGLDSHGFAASKLWNVGRWTISRVWDAIGHIPDADELCSYLKSHERYADLHSQSSQRVLQELGEAFVSWYEQDDPDANP
PGYRKHGDDHPRSTVTWKNQGFKLDTQYNRVRLSKGMNMKESRYAADYILCEYTLQTDEQTLDAVESVQTVRAVWTGEEWELHFVCKMRVETPETPGEKT
AGVDLGICNTAAISVGDETLLYPGNSLKEDAHYFRQQEYETEGENGPSDHAEWARQKKSRRQEHFLHALSKDIVQQCADRGVGTIAVGHPKNIREDEDWG
RHGNKRLHDWAFETLLSHIEYKAQERGIDVERVDEAGLKTSKTCCECGAEADSNRVERGLYVCESCELVANSDLNAAENMRATVTPNPTQDRSNGCLAQP
SVRLFEKSTGRVAPQEQVRP
PGYRKHGDDHPRSTVTWKNQGFKLDTQYNRVRLSKGMNMKESRYAADYILCEYTLQTDEQTLDAVESVQTVRAVWTGEEWELHFVCKMRVETPETPGEKT
AGVDLGICNTAAISVGDETLLYPGNSLKEDAHYFRQQEYETEGENGPSDHAEWARQKKSRRQEHFLHALSKDIVQQCADRGVGTIAVGHPKNIREDEDWG
RHGNKRLHDWAFETLLSHIEYKAQERGIDVERVDEAGLKTSKTCCECGAEADSNRVERGLYVCESCELVANSDLNAAENMRATVTPNPTQDRSNGCLAQP
SVRLFEKSTGRVAPQEQVRP
Blast result :
Comments
ISNph18 is 43% (ORFB) aa similar to ISDka2.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343