ISNph15
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1476 bp
Ends
Left end : AGGCGGTACAAGGCGACTGCCCCGGGGCTTGACCCCGGGGTTGAAGCCGACAGCTTTATACTGATTCAAACAGTATAATACGGTATGGGTCAGATGGAAT II struct. : Yes
Right end : ACTGCGCTCCCTACGCTCACGCCTCACCGGGAGGCTGTGAGTGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGGGGCTTGACCCCCCGGGGTGAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAGATATCCT | GTAC | GACCATGAATTCGA | tcac |
DNA sequence
AGGCGGTACAAGGCGACTGCCCCGGGGCTTGACCCCGGGGTTGAAGCCGACAGCTTTATACTGATTCAAACAGTATAATACGGTATGGGTCAGATGGAAT
GTTACCCGAAGATGCGACAGCGCGGTGTCGTTACAATCCCAGAAGAAGTCCGAGACGGGCTTAATCTGGAAGAAGGCGACCAGTTGAAACTCACTGTGGA
AAAACTTGACTAACACCGATGAAACACACGCTTCGCTTCCGCGCGTACCTGCCCGACGACGTGGCAAGCGAAGCGTGGCGGCACATCGACATTCTCCGGC
AGATTCGTAATCACGCTGTCCGAGACTACTACAACGCAGACTACAACGACAGGCCATCTGACTACGACCAACACAGCAAACTCAAAGACTGGACAGACCA
GTGGCCGACCTTTGCCGACCCGTCACAACACGCCGCACAACAGGCTATCAGCCAAATTCACAGCGACATAGAGACGCTGCAAGAACGCCGAAACGAAGGC
TACGATGTTGGGCGGTTGCAGTGGCAAGGAGCAGGCGAATTTCGGTCAGTGTCGTACAATCAGGCAAGTCGCTTCAACGTGGATTACAACACGGGCGACG
ACCGATTCGTGCGACTCCGACTCGAAAAGATTGGCTGGTTCAAAATCCGAGCAGACCGCGACGTGCCACCAGAAGAGGACATTGACGAGGTTATCCTCAA
AAAAGAGACGACTGGCGAATGGTACGTCTCACTCGTCACCACTGTCGAAGACACACCCGAGAAACCGCCACTCAGTGAGATTGAAGCCGAGGACTGCGTG
GGCGTTGACCTTGGCATCACCAGCTACATCCACACTTCGGAGAACCTGTCCGTTGATACACTCGACCTGTCCGATGAGTACGACCGCTACGCACGCGAAC
AGCGGAAACTTGACCGGAAAGAACACGGCTCCGCCAACTGGGAGAAACAGCGTCAGAAGGTTGCCCAAGCGAAACGAAAAATCAAACGGAAGGTGCGAGA
CTACCAGCACAAGTTGACGACGTGGCTCGTCACAGAGCACGATGTTGTAGCTGTCGAAGACTTGGATGTGAAACCGATGCTGGAAGCCAGTCAGAACGCC
AAGAACAAGCAGGATGCCGCGTGGTCGCAGTTTATCGAACTGCTGGAGTACAAGGCTGACCTACACGGCACACACGTCGAAACGGTGAAGCCGGGAGGAA
CAACCAAAGAGTGCGCTGTGTGTGGTGTCGAAACAGCCAAGCCAATCTGGGTACGCGAACACTCTTGTCCAGCGTGCGGCCATACGGAAGCCCGCGACCT
CAACGCGGCGAAGAATATTCTCTATCGCGGACTCAAGCAGTTAGGGGCGGGACGCTCCGAATCAACGCCTGTGCAGACTGCGCTCCCTACGCTCACGCCT
CACCGGGAGGCTGTGAGTGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGGGGCTTGACCCCCCGGGGTGAGTTCAC
GTTACCCGAAGATGCGACAGCGCGGTGTCGTTACAATCCCAGAAGAAGTCCGAGACGGGCTTAATCTGGAAGAAGGCGACCAGTTGAAACTCACTGTGGA
AAAACTTGACTAACACCGATGAAACACACGCTTCGCTTCCGCGCGTACCTGCCCGACGACGTGGCAAGCGAAGCGTGGCGGCACATCGACATTCTCCGGC
AGATTCGTAATCACGCTGTCCGAGACTACTACAACGCAGACTACAACGACAGGCCATCTGACTACGACCAACACAGCAAACTCAAAGACTGGACAGACCA
GTGGCCGACCTTTGCCGACCCGTCACAACACGCCGCACAACAGGCTATCAGCCAAATTCACAGCGACATAGAGACGCTGCAAGAACGCCGAAACGAAGGC
TACGATGTTGGGCGGTTGCAGTGGCAAGGAGCAGGCGAATTTCGGTCAGTGTCGTACAATCAGGCAAGTCGCTTCAACGTGGATTACAACACGGGCGACG
ACCGATTCGTGCGACTCCGACTCGAAAAGATTGGCTGGTTCAAAATCCGAGCAGACCGCGACGTGCCACCAGAAGAGGACATTGACGAGGTTATCCTCAA
AAAAGAGACGACTGGCGAATGGTACGTCTCACTCGTCACCACTGTCGAAGACACACCCGAGAAACCGCCACTCAGTGAGATTGAAGCCGAGGACTGCGTG
GGCGTTGACCTTGGCATCACCAGCTACATCCACACTTCGGAGAACCTGTCCGTTGATACACTCGACCTGTCCGATGAGTACGACCGCTACGCACGCGAAC
AGCGGAAACTTGACCGGAAAGAACACGGCTCCGCCAACTGGGAGAAACAGCGTCAGAAGGTTGCCCAAGCGAAACGAAAAATCAAACGGAAGGTGCGAGA
CTACCAGCACAAGTTGACGACGTGGCTCGTCACAGAGCACGATGTTGTAGCTGTCGAAGACTTGGATGTGAAACCGATGCTGGAAGCCAGTCAGAACGCC
AAGAACAAGCAGGATGCCGCGTGGTCGCAGTTTATCGAACTGCTGGAGTACAAGGCTGACCTACACGGCACACACGTCGAAACGGTGAAGCCGGGAGGAA
CAACCAAAGAGTGCGCTGTGTGTGGTGTCGAAACAGCCAAGCCAATCTGGGTACGCGAACACTCTTGTCCAGCGTGCGGCCATACGGAAGCCCGCGACCT
CAACGCGGCGAAGAATATTCTCTATCGCGGACTCAAGCAGTTAGGGGCGGGACGCTCCGAATCAACGCCTGTGCAGACTGCGCTCCCTACGCTCACGCCT
CACCGGGAGGCTGTGAGTGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGGGGCTTGACCCCCCGGGGTGAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1239 bp | 412 aa | 219 | 1457 | + | No |
AG : TnpB
ORF sequence :
MKHTLRFRAYLPDDVASEAWRHIDILRQIRNHAVRDYYNADYNDRPSDYDQHSKLKDWTDQWPTFADPSQHAAQQAISQIHSDIETLQERRNEGYDVGRL
QWQGAGEFRSVSYNQASRFNVDYNTGDDRFVRLRLEKIGWFKIRADRDVPPEEDIDEVILKKETTGEWYVSLVTTVEDTPEKPPLSEIEAEDCVGVDLGI
TSYIHTSENLSVDTLDLSDEYDRYAREQRKLDRKEHGSANWEKQRQKVAQAKRKIKRKVRDYQHKLTTWLVTEHDVVAVEDLDVKPMLEASQNAKNKQDA
AWSQFIELLEYKADLHGTHVETVKPGGTTKECAVCGVETAKPIWVREHSCPACGHTEARDLNAAKNILYRGLKQLGAGRSESTPVQTALPTLTPHREAVS
AKRVVEAGSPGA
QWQGAGEFRSVSYNQASRFNVDYNTGDDRFVRLRLEKIGWFKIRADRDVPPEEDIDEVILKKETTGEWYVSLVTTVEDTPEKPPLSEIEAEDCVGVDLGI
TSYIHTSENLSVDTLDLSDEYDRYAREQRKLDRKEHGSANWEKQRQKVAQAKRKIKRKVRDYQHKLTTWLVTEHDVVAVEDLDVKPMLEASQNAKNKQDA
AWSQFIELLEYKADLHGTHVETVKPGGTTKECAVCGVETAKPIWVREHSCPACGHTEARDLNAAKNILYRGLKQLGAGRSESTPVQTALPTLTPHREAVS
AKRVVEAGSPGA
Blast result :
Comments
ISNph15 is 69% (ORFB) aa similar to ISNph10. There is an empty site in Haloterrigena turkmenica DSM 5511 genome, this IS disrupt the gene of the formate dehydrogenase, alpha subunit.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343