ISRme6
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000352 | ND | Ralstonia metallidurans | Ralstonia metallidurans CH34 Cupriavidus metallidurans CH34 |
DNA section
IS Length : 913 bp
Ends
IR Length : 19/22
IRL : GAGGCCAGTTCAAAAACCCCTGAGGCGGCTGTTTACTTTCTCGGTAAGCT
IRR : GAGGCCAGTTCAAAAAGGCTGCTCCGTACGCCTGAAGATGTTCCAGCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTTCATACT | TAA | AGGAAAATCT | 3 |
DNA sequence
GAGGCCAGTTCAAAAACCCCTGAGGCGGCTGTTTACTTTCTCGGTAAGCTGTTAACCTTGGATGTCTGAACAACGGAACCCAAGGGATGGAAGCGCCGAT
TATTGATGACGAATTGTGGACACTGATCGAACCGTTACTGCCGCCGCCCAAGCCCCGGCGCAAAGGGCATCCTGGTCGCCCACGCGTATCGGATCGGGCG
GCGTTGAATGGCATCCTGTTCGTGTTGAAAACCGGACTGCGATGGAACCACCTGCCGACCGTATTGGGCTTTGGCTCCGGCGCGACCTGCTGGCGACGAC
TGAACGACTGGCGCAAAGCAGGCGTATGGGATCGACTGCACGAACTGCTGCTCGACAAGTTGCGCGAGGCCGGGCAGATCGATCTTTCATACGCTGCCGT
CGATTCCTCGTCGGTACGAGCTGTTGGGGCGGGCGAAAAACTGGCCCGAACCCCACGGATCGCTCGCGACCCGGTTCCAAACACCACATCCTCGTAGACG
CCAATGGCGTTCCCATCAGCGCCATCCTGACAGGCGCGAACCGCAACGACGTCACCCAGTTGCTGCCGCTCGTCGACGCGATTCCCCCGATCCGTGGCGC
GCGCGGCCGACCACTTCAGAGACCCAAGGTCATCTATGCCGATCGTGGTTACGATTCCGATCCGCATCGTCAACGATTGCGCGAACGCGGCATCAAACCG
GTGATCGCACGGCGCCGCACTGAACATGGCAGTGGTCTGGGCAAATTCCGTTGGGTCGTTGAACGGACTCACTCGTGGCTCCACAACTTCCGTCGTCTTC
GCATACGCTTCGATCGTCGAGCTGACATTCACGAAGCATTCTTGAAATTCGGCTGCGCCCTCGTCTGCTGGAACATCTTCAGGCGTACGGAGCAGCCTTT
TTGAACTGGCCTC
TATTGATGACGAATTGTGGACACTGATCGAACCGTTACTGCCGCCGCCCAAGCCCCGGCGCAAAGGGCATCCTGGTCGCCCACGCGTATCGGATCGGGCG
GCGTTGAATGGCATCCTGTTCGTGTTGAAAACCGGACTGCGATGGAACCACCTGCCGACCGTATTGGGCTTTGGCTCCGGCGCGACCTGCTGGCGACGAC
TGAACGACTGGCGCAAAGCAGGCGTATGGGATCGACTGCACGAACTGCTGCTCGACAAGTTGCGCGAGGCCGGGCAGATCGATCTTTCATACGCTGCCGT
CGATTCCTCGTCGGTACGAGCTGTTGGGGCGGGCGAAAAACTGGCCCGAACCCCACGGATCGCTCGCGACCCGGTTCCAAACACCACATCCTCGTAGACG
CCAATGGCGTTCCCATCAGCGCCATCCTGACAGGCGCGAACCGCAACGACGTCACCCAGTTGCTGCCGCTCGTCGACGCGATTCCCCCGATCCGTGGCGC
GCGCGGCCGACCACTTCAGAGACCCAAGGTCATCTATGCCGATCGTGGTTACGATTCCGATCCGCATCGTCAACGATTGCGCGAACGCGGCATCAAACCG
GTGATCGCACGGCGCCGCACTGAACATGGCAGTGGTCTGGGCAAATTCCGTTGGGTCGTTGAACGGACTCACTCGTGGCTCCACAACTTCCGTCGTCTTC
GCATACGCTTCGATCGTCGAGCTGACATTCACGAAGCATTCTTGAAATTCGGCTGCGCCCTCGTCTGCTGGAACATCTTCAGGCGTACGGAGCAGCCTTT
TTGAACTGGCCTC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
411 bp | 136 aa | 87 | 497 | + | No |
Description : First part of the transposase
ORF sequence :
MEAPIIDDELWTLIEPLLPPPKPRRKGHPGRPRVSDRAALNGILFVLKTGLRWNHLPTVLGFGSGATCWRRLNDWRKAGVWDRLHELLLDKLREAGQIDL
SYAAVDSSSVRAVGAGEKLARTPRIARDPVPNTTSS
SYAAVDSSSVRAVGAGEKLARTPRIARDPVPNTTSS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
579 bp | 192 aa | 326 | 904 | + | No |
Description : Second part of the transposase
ORF sequence :
MGSTARTAARQVARGRADRSFIRCRRFLVGTSCWGGRKTGPNPTDRSRPGSKHHILVDANGVPISAILTGANRNDVTQLLPLVDAIPPIRGARGRPLQRP
KVIYADRGYDSDPHRQRLRERGIKPVIARRRTEHGSGLGKFRWVVERTHSWLHNFRRLRIRFDRRADIHEAFLKFGCALVCWNIFRRTEQPF
KVIYADRGYDSDPHRQRLRERGIKPVIARRRTEHGSGLGKFRWVVERTHSWLHNFRRLRIRFDRRADIHEAFLKFGCALVCWNIFRRTEQPF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
818 bp | 272 aa | 87 | 904 | + | Yes |
Chemistry : DDE
ORF sequence :
MEAPIIDDELWTLIEPLLPPPKPRRKGHPGRPRVSDRAALNGILFVLKTGLRWNHLPTVLGFGSGATCWRRLNDWRKAGVWDRLHELLLDKLREAGQIDL
SYAAVDSSSVRAVGAGEKTGPNPTDRSRPGSKHHILVDANGVPISAILTGANRNDVTQLLPLVDAIPPIRGARGRPLQRPKVIYADRGYDSDPHRQRLRE
RGIKPVIARRRTEHGSGLGKFRWVVERTHSWLHNFRRLRIRFDRRADIHEAFLKFGCALVCWNIFRRTEQPF
SYAAVDSSSVRAVGAGEKTGPNPTDRSRPGSKHHILVDANGVPISAILTGANRNDVTQLLPLVDAIPPIRGARGRPLQRPKVIYADRGYDSDPHRQRLRE
RGIKPVIARRRTEHGSGLGKFRWVVERTHSWLHNFRRLRIRFDRRADIHEAFLKFGCALVCWNIFRRTEQPF
Blast result :
Comments
ISRme6 is 91% aa similar to ISBugl2.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
References
1] Submitted by ISfinder (2010).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M., Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A., Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S., Taghavi,S., van der Lelie,D. and Richardson,P. (2006) Direct submission GenBank
3] Janssen,P.J., Van Houdt,R., Moors,H., Monsieurs,P., Morin,N., Benotmane,R., Lapidus,A., McCorkle,S., Monchy,S., Taghavi,S., van der Lelie,N., Dunn,J., Leys,N. and Mergeay,M. (2010) Direct submission GenBank
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M., Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A., Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S., Taghavi,S., van der Lelie,D. and Richardson,P. (2006) Direct submission GenBank
3] Janssen,P.J., Van Houdt,R., Moors,H., Monsieurs,P., Morin,N., Benotmane,R., Lapidus,A., McCorkle,S., Monchy,S., Taghavi,S., van der Lelie,N., Dunn,J., Leys,N. and Mergeay,M. (2010) Direct submission GenBank