ISNph12

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
Natronomonas pharaonis DSM 2160 plasmid PL131
DNA section
IS Length : 1424 bp

Ends


Left end : AGGCTGTCGAGGCGAATGCCACGGGGCTTGACCCCGTGGATGAAGCCGACAACTTGTGAACCAAATCATTAAGTCGAAATATGCCAATAATCACGGTACG II struct. : Yes
Right end : GTCATCGAAACGGGAAGCCTCGGGGTCGTACGGAAGACGGAGTCTTCCGTGATGACGAGAGACGAAGTCCCTCGAACCACTTGACCCCGAGGCGGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTCAATTCAGGGGTCTTTACTGCTTACGACTGTTGTtcac

DNA sequence

AGGCTGTCGAGGCGAATGCCACGGGGCTTGACCCCGTGGATGAAGCCGACAACTTGTGAACCAAATCATTAAGTCGAAATATGCCAATAATCACGGTACG
GCGATGTGGTACGACTACCGCTTCTGTGCCTATCCTGACCGAACAGGTGTGGCTGCGGAAGCGGAACGCCACATCGACATCCACCGCCAAGCCTACAACC
ACACCCGCTACGAATACAACGCCCTCGACACTGACGAGGACAACATCGGTTCGGCGTATCAACACCAGAAGCGCCTCACCGAGTGGAAAGACGAATGGTC
CGTGTTCTCGGAAGTCCACTCGAAGGCGTTGCAGAAAACCGTCGAACGCTTCTACGATAACCTATCGAACCTTTCCGAGAAGAAACAGAACGGGCACAAG
GTCGGGTGGCTCAAGTGGAAACCGCCGCGAGAATACCAGAGTGTGACGTACTCGCAGTCCGGCTTCGAACTCAAAAACACGAGTGGTCGGACTGCCACGC
TCTGGCTTTCGAAAATCGGTGACATCCCCATCCGCTACCACCGCCCTATCCCCGACAACGCCACTATCAAAGAAGTCACGCTGAAGAAAGAAACGACTGG
CGAGTGGTACGTCACGTTTGGCCTCGAAGTCGAAGACACCACGCTCCCCGAGAAACCCGACGTGGATGACTTGGATGCCGAGGATTGTGTCGGCATCGAC
CTCGGCATCACCAACTACATCTATACGAGCGATGGCGACAGCGTGGACTGGCTTAACCTCTCCGACGAGTACGAACGCCTGCGTCGGGAACAGCGCAATC
TCTCCCGAAAAGAACATAGGAGCAACAACTGGAAGAAACAACGCCGGGAGGTCGCCAAAGTCAAACGTCGAATCAAGCGGAAAGTCGAAGATTTCCAGCA
CAAACTCACGACATGGCTGGTCAAGACGTATGACGCCGTGTTCGTGGAGGATTTGAACGTCTCAGGGATGCTTCAACAGCGGGGGAACGCCCGGAATAAG
CAGGACGCTGCGTGGCGTGGGTTCATCAATATGCTGGAGTATAAGGGCGACCTGTACGGCACGCACGTTGTCCAAGTGAACCCTGCGGGGACAACCAAAG
AGTGCGCCGAGTGTGGCGTCGAGACGGAGAAGCCGTTGTGGGTGCGGGAACACTCATGTCCGTCGTGTGGGTTCGAGGCGGACAGGGACGCGAATGCGTC
GTACAACGTTCTTTCTCGCGGTCTTCGGGAGTTAGGTCTGGGACAGGCCGAAGTCACGCCCGTGGAGACTGCGACCGCTGTGGAAACCGATGGAGGCCGG
TCTTCGTCGGTTCCTGCAAGTCGCGTCATCGAAACGGGAAGCCTCGGGGTCGTACGGAAGACGGAGTCTTCCGTGATGACGAGAGACGAAGTCCCTCGAA
CCACTTGACCCCGAGGCGGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1305 bp434 aa1041408+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MWYDYRFCAYPDRTGVAAEAERHIDIHRQAYNHTRYEYNALDTDEDNIGSAYQHQKRLTEWKDEWSVFSEVHSKALQKTVERFYDNLSNLSEKKQNGHKV
GWLKWKPPREYQSVTYSQSGFELKNTSGRTATLWLSKIGDIPIRYHRPIPDNATIKEVTLKKETTGEWYVTFGLEVEDTTLPEKPDVDDLDAEDCVGIDL
GITNYIYTSDGDSVDWLNLSDEYERLRREQRNLSRKEHRSNNWKKQRREVAKVKRRIKRKVEDFQHKLTTWLVKTYDAVFVEDLNVSGMLQQRGNARNKQ
DAAWRGFINMLEYKGDLYGTHVVQVNPAGTTKECAECGVETEKPLWVREHSCPSCGFEADRDANASYNVLSRGLRELGLGQAEVTPVETATAVETDGGRS
SSVPASRVIETGSLGVVRKTESSVMTRDEVPRTT

 

Blast result :
Comments
ISNph12 is 67% (ORFB) aa similar to ISHma12.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343