ISNph12
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 Natronomonas pharaonis DSM 2160 plasmid PL131 |
DNA section
IS Length : 1424 bp
Ends
Left end : AGGCTGTCGAGGCGAATGCCACGGGGCTTGACCCCGTGGATGAAGCCGACAACTTGTGAACCAAATCATTAAGTCGAAATATGCCAATAATCACGGTACG II struct. : Yes
Right end : GTCATCGAAACGGGAAGCCTCGGGGTCGTACGGAAGACGGAGTCTTCCGTGATGACGAGAGACGAAGTCCCTCGAACCACTTGACCCCGAGGCGGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTCAATTCAGGGGTCT | TTAC | TGCTTACGACTGTTGT | tcac |
DNA sequence
AGGCTGTCGAGGCGAATGCCACGGGGCTTGACCCCGTGGATGAAGCCGACAACTTGTGAACCAAATCATTAAGTCGAAATATGCCAATAATCACGGTACG
GCGATGTGGTACGACTACCGCTTCTGTGCCTATCCTGACCGAACAGGTGTGGCTGCGGAAGCGGAACGCCACATCGACATCCACCGCCAAGCCTACAACC
ACACCCGCTACGAATACAACGCCCTCGACACTGACGAGGACAACATCGGTTCGGCGTATCAACACCAGAAGCGCCTCACCGAGTGGAAAGACGAATGGTC
CGTGTTCTCGGAAGTCCACTCGAAGGCGTTGCAGAAAACCGTCGAACGCTTCTACGATAACCTATCGAACCTTTCCGAGAAGAAACAGAACGGGCACAAG
GTCGGGTGGCTCAAGTGGAAACCGCCGCGAGAATACCAGAGTGTGACGTACTCGCAGTCCGGCTTCGAACTCAAAAACACGAGTGGTCGGACTGCCACGC
TCTGGCTTTCGAAAATCGGTGACATCCCCATCCGCTACCACCGCCCTATCCCCGACAACGCCACTATCAAAGAAGTCACGCTGAAGAAAGAAACGACTGG
CGAGTGGTACGTCACGTTTGGCCTCGAAGTCGAAGACACCACGCTCCCCGAGAAACCCGACGTGGATGACTTGGATGCCGAGGATTGTGTCGGCATCGAC
CTCGGCATCACCAACTACATCTATACGAGCGATGGCGACAGCGTGGACTGGCTTAACCTCTCCGACGAGTACGAACGCCTGCGTCGGGAACAGCGCAATC
TCTCCCGAAAAGAACATAGGAGCAACAACTGGAAGAAACAACGCCGGGAGGTCGCCAAAGTCAAACGTCGAATCAAGCGGAAAGTCGAAGATTTCCAGCA
CAAACTCACGACATGGCTGGTCAAGACGTATGACGCCGTGTTCGTGGAGGATTTGAACGTCTCAGGGATGCTTCAACAGCGGGGGAACGCCCGGAATAAG
CAGGACGCTGCGTGGCGTGGGTTCATCAATATGCTGGAGTATAAGGGCGACCTGTACGGCACGCACGTTGTCCAAGTGAACCCTGCGGGGACAACCAAAG
AGTGCGCCGAGTGTGGCGTCGAGACGGAGAAGCCGTTGTGGGTGCGGGAACACTCATGTCCGTCGTGTGGGTTCGAGGCGGACAGGGACGCGAATGCGTC
GTACAACGTTCTTTCTCGCGGTCTTCGGGAGTTAGGTCTGGGACAGGCCGAAGTCACGCCCGTGGAGACTGCGACCGCTGTGGAAACCGATGGAGGCCGG
TCTTCGTCGGTTCCTGCAAGTCGCGTCATCGAAACGGGAAGCCTCGGGGTCGTACGGAAGACGGAGTCTTCCGTGATGACGAGAGACGAAGTCCCTCGAA
CCACTTGACCCCGAGGCGGTTCAC
GCGATGTGGTACGACTACCGCTTCTGTGCCTATCCTGACCGAACAGGTGTGGCTGCGGAAGCGGAACGCCACATCGACATCCACCGCCAAGCCTACAACC
ACACCCGCTACGAATACAACGCCCTCGACACTGACGAGGACAACATCGGTTCGGCGTATCAACACCAGAAGCGCCTCACCGAGTGGAAAGACGAATGGTC
CGTGTTCTCGGAAGTCCACTCGAAGGCGTTGCAGAAAACCGTCGAACGCTTCTACGATAACCTATCGAACCTTTCCGAGAAGAAACAGAACGGGCACAAG
GTCGGGTGGCTCAAGTGGAAACCGCCGCGAGAATACCAGAGTGTGACGTACTCGCAGTCCGGCTTCGAACTCAAAAACACGAGTGGTCGGACTGCCACGC
TCTGGCTTTCGAAAATCGGTGACATCCCCATCCGCTACCACCGCCCTATCCCCGACAACGCCACTATCAAAGAAGTCACGCTGAAGAAAGAAACGACTGG
CGAGTGGTACGTCACGTTTGGCCTCGAAGTCGAAGACACCACGCTCCCCGAGAAACCCGACGTGGATGACTTGGATGCCGAGGATTGTGTCGGCATCGAC
CTCGGCATCACCAACTACATCTATACGAGCGATGGCGACAGCGTGGACTGGCTTAACCTCTCCGACGAGTACGAACGCCTGCGTCGGGAACAGCGCAATC
TCTCCCGAAAAGAACATAGGAGCAACAACTGGAAGAAACAACGCCGGGAGGTCGCCAAAGTCAAACGTCGAATCAAGCGGAAAGTCGAAGATTTCCAGCA
CAAACTCACGACATGGCTGGTCAAGACGTATGACGCCGTGTTCGTGGAGGATTTGAACGTCTCAGGGATGCTTCAACAGCGGGGGAACGCCCGGAATAAG
CAGGACGCTGCGTGGCGTGGGTTCATCAATATGCTGGAGTATAAGGGCGACCTGTACGGCACGCACGTTGTCCAAGTGAACCCTGCGGGGACAACCAAAG
AGTGCGCCGAGTGTGGCGTCGAGACGGAGAAGCCGTTGTGGGTGCGGGAACACTCATGTCCGTCGTGTGGGTTCGAGGCGGACAGGGACGCGAATGCGTC
GTACAACGTTCTTTCTCGCGGTCTTCGGGAGTTAGGTCTGGGACAGGCCGAAGTCACGCCCGTGGAGACTGCGACCGCTGTGGAAACCGATGGAGGCCGG
TCTTCGTCGGTTCCTGCAAGTCGCGTCATCGAAACGGGAAGCCTCGGGGTCGTACGGAAGACGGAGTCTTCCGTGATGACGAGAGACGAAGTCCCTCGAA
CCACTTGACCCCGAGGCGGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 104 | 1408 | + | No |
AG : TnpB
ORF sequence :
MWYDYRFCAYPDRTGVAAEAERHIDIHRQAYNHTRYEYNALDTDEDNIGSAYQHQKRLTEWKDEWSVFSEVHSKALQKTVERFYDNLSNLSEKKQNGHKV
GWLKWKPPREYQSVTYSQSGFELKNTSGRTATLWLSKIGDIPIRYHRPIPDNATIKEVTLKKETTGEWYVTFGLEVEDTTLPEKPDVDDLDAEDCVGIDL
GITNYIYTSDGDSVDWLNLSDEYERLRREQRNLSRKEHRSNNWKKQRREVAKVKRRIKRKVEDFQHKLTTWLVKTYDAVFVEDLNVSGMLQQRGNARNKQ
DAAWRGFINMLEYKGDLYGTHVVQVNPAGTTKECAECGVETEKPLWVREHSCPSCGFEADRDANASYNVLSRGLRELGLGQAEVTPVETATAVETDGGRS
SSVPASRVIETGSLGVVRKTESSVMTRDEVPRTT
GWLKWKPPREYQSVTYSQSGFELKNTSGRTATLWLSKIGDIPIRYHRPIPDNATIKEVTLKKETTGEWYVTFGLEVEDTTLPEKPDVDDLDAEDCVGIDL
GITNYIYTSDGDSVDWLNLSDEYERLRREQRNLSRKEHRSNNWKKQRREVAKVKRRIKRKVEDFQHKLTTWLVKTYDAVFVEDLNVSGMLQQRGNARNKQ
DAAWRGFINMLEYKGDLYGTHVVQVNPAGTTKECAECGVETEKPLWVREHSCPSCGFEADRDANASYNVLSRGLRELGLGQAEVTPVETATAVETDGGRS
SSVPASRVIETGSLGVVRKTESSVMTRDEVPRTT
Blast result :
Comments
ISNph12 is 67% (ORFB) aa similar to ISHma12.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343