ISNph8
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1431 bp
Ends
Left end : ACTAGAAGAACAAGGGTGAGTACCCCGCGCCACCGTGCGCGGGGGTGAAGCCCGACACTGGGTCAACCTATCAACCACAGACAATACCTTTACAAGACCG II struct. : Yes
Right end : TGACCCACGACACCGCTACAGGTCATCAAGCCGATGGTGTCGTGGGTGTGTCAGACTAATCCACGGGAAGCCACGGGCCACCGCGCCCGTGGCAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GATAAACCGGTGGTT | CTAT | ACGAACAAGCCGAGGC | tcac |
DNA sequence
ACTAGAAGAACAAGGGTGAGTACCCCGCGCCACCGTGCGCGGGGGTGAAGCCCGACACTGGGTCAACCTATCAACCACAGACAATACCTTTACAAGACCG
CAGTACGACGATTATTGTATGCAGAAGTCGCTGACCAAAACACTCGTCTTCCAACTCGACCCCGATGAGTCTGGTCAGCAACTTCTGGACGACGCCTTCC
TCGAAGCCCGGCGCGTGTACAACGAAACCATCCGCCGGACAAAGAACGGTGACGACTGGGACGAGATTCGGCAGGACTTGGAATCCGACGCCGATCTCGT
AAACAATACCGCGCAACTCGTCGTGCAGAAATCGCTGGAAGCGATGGAGAACTACTACGAGTACGACGACTACAACCAACCCAGTCACACGAAAGACGGC
GCGTACCCACTTCGGTCAAACTACGAGGAAGGCTACAACCTGTTCCTCGAAGACGACTCAATCCGCTACCGAATCAGTGCGAAGCCGTACAACCCAGTGA
AGGGTACGCTTCAGGGGTCGCTAGACGTGCTCAAACAACTCCGAACGGCCATCGAGTCCGAGACGTGGCGAGTCGGGACGGCGGAAGCGATGAAACGGAA
CGGGAACTACGAACTCCACATCAACATCACTCACACCGAGGCTGAAGTCCGAGACAAACAGGACTCACGCACAGTTGTTGGAGTGGACATCAACGAGGAC
TGCGTTGCACTCGCTTCACTCCACGAAGACGACATTGTTAACTCAGTTGTCATCGACTACCCGGAAATCAAGGAAGAACGTCATCGGTACTTCACGATGC
GGAAACGGATGCAGAACAGCGGGAAGTCGTCGTTCGACCGAGCGTTCGAGCAACAAGAAGAACGATTCGTTCACGACCAACTCCACAAAGTCTCTCGACA
AGTCGTGGAATGGGTGCCACGGTTCGAGAACCCCGTCATCGTCTTTGAAGACCTCAAAGAGATGCGGGACTCGATTGATTATGGCACCCGGATGAACCGC
CGCCTTCACAGTCTCCCATTCCGTAAACTTCGAGAGTTCATCACGTACAAAGCCGCGTTCCAAGGCATTCCGAGCGAGGAGATTAACCCCGAGTACACGA
GTCAGGCGTGTTCGCTCACCGAGTGTGAGCATACGACTCGTGCAAACCGAAACAAGAAGCGATTCAAGTGCGTGGAGTGTGGGCGGCAAGACCACGCCGA
CCGGAACGCGGCTATCAACATCGCCAAGAAAGGGTTGGAAAAACTGAATCGAAATGTGCCTGCTCTCAACAGCCTTCCACAAGTTCGGAAGGTGCGACGG
CAGGCATCGGGCTGTGTGAACCAGCCGACCGTGACCCACGACACCGCTACAGGTCATCAAGCCGATGGTGTCGTGGGTGTGTCAGACTAATCCACGGGAA
GCCACGGGCCACCGCGCCCGTGGCAGTTCAC
CAGTACGACGATTATTGTATGCAGAAGTCGCTGACCAAAACACTCGTCTTCCAACTCGACCCCGATGAGTCTGGTCAGCAACTTCTGGACGACGCCTTCC
TCGAAGCCCGGCGCGTGTACAACGAAACCATCCGCCGGACAAAGAACGGTGACGACTGGGACGAGATTCGGCAGGACTTGGAATCCGACGCCGATCTCGT
AAACAATACCGCGCAACTCGTCGTGCAGAAATCGCTGGAAGCGATGGAGAACTACTACGAGTACGACGACTACAACCAACCCAGTCACACGAAAGACGGC
GCGTACCCACTTCGGTCAAACTACGAGGAAGGCTACAACCTGTTCCTCGAAGACGACTCAATCCGCTACCGAATCAGTGCGAAGCCGTACAACCCAGTGA
AGGGTACGCTTCAGGGGTCGCTAGACGTGCTCAAACAACTCCGAACGGCCATCGAGTCCGAGACGTGGCGAGTCGGGACGGCGGAAGCGATGAAACGGAA
CGGGAACTACGAACTCCACATCAACATCACTCACACCGAGGCTGAAGTCCGAGACAAACAGGACTCACGCACAGTTGTTGGAGTGGACATCAACGAGGAC
TGCGTTGCACTCGCTTCACTCCACGAAGACGACATTGTTAACTCAGTTGTCATCGACTACCCGGAAATCAAGGAAGAACGTCATCGGTACTTCACGATGC
GGAAACGGATGCAGAACAGCGGGAAGTCGTCGTTCGACCGAGCGTTCGAGCAACAAGAAGAACGATTCGTTCACGACCAACTCCACAAAGTCTCTCGACA
AGTCGTGGAATGGGTGCCACGGTTCGAGAACCCCGTCATCGTCTTTGAAGACCTCAAAGAGATGCGGGACTCGATTGATTATGGCACCCGGATGAACCGC
CGCCTTCACAGTCTCCCATTCCGTAAACTTCGAGAGTTCATCACGTACAAAGCCGCGTTCCAAGGCATTCCGAGCGAGGAGATTAACCCCGAGTACACGA
GTCAGGCGTGTTCGCTCACCGAGTGTGAGCATACGACTCGTGCAAACCGAAACAAGAAGCGATTCAAGTGCGTGGAGTGTGGGCGGCAAGACCACGCCGA
CCGGAACGCGGCTATCAACATCGCCAAGAAAGGGTTGGAAAAACTGAATCGAAATGTGCCTGCTCTCAACAGCCTTCCACAAGTTCGGAAGGTGCGACGG
CAGGCATCGGGCTGTGTGAACCAGCCGACCGTGACCCACGACACCGCTACAGGTCATCAAGCCGATGGTGTCGTGGGTGTGTCAGACTAATCCACGGGAA
GCCACGGGCCACCGCGCCCGTGGCAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1272 bp | 423 aa | 119 | 1390 | + | No |
AG : TnpB
ORF sequence :
MQKSLTKTLVFQLDPDESGQQLLDDAFLEARRVYNETIRRTKNGDDWDEIRQDLESDADLVNNTAQLVVQKSLEAMENYYEYDDYNQPSHTKDGAYPLRS
NYEEGYNLFLEDDSIRYRISAKPYNPVKGTLQGSLDVLKQLRTAIESETWRVGTAEAMKRNGNYELHINITHTEAEVRDKQDSRTVVGVDINEDCVALAS
LHEDDIVNSVVIDYPEIKEERHRYFTMRKRMQNSGKSSFDRAFEQQEERFVHDQLHKVSRQVVEWVPRFENPVIVFEDLKEMRDSIDYGTRMNRRLHSLP
FRKLREFITYKAAFQGIPSEEINPEYTSQACSLTECEHTTRANRNKKRFKCVECGRQDHADRNAAINIAKKGLEKLNRNVPALNSLPQVRKVRRQASGCV
NQPTVTHDTATGHQADGVVGVSD
NYEEGYNLFLEDDSIRYRISAKPYNPVKGTLQGSLDVLKQLRTAIESETWRVGTAEAMKRNGNYELHINITHTEAEVRDKQDSRTVVGVDINEDCVALAS
LHEDDIVNSVVIDYPEIKEERHRYFTMRKRMQNSGKSSFDRAFEQQEERFVHDQLHKVSRQVVEWVPRFENPVIVFEDLKEMRDSIDYGTRMNRRLHSLP
FRKLREFITYKAAFQGIPSEEINPEYTSQACSLTECEHTTRANRNKKRFKCVECGRQDHADRNAAINIAKKGLEKLNRNVPALNSLPQVRKVRRQASGCV
NQPTVTHDTATGHQADGVVGVSD
Blast result :
Comments
ISNph8 is 77% (ORFB) aa similar to ISHma7.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343