ISNph8

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1431 bp

Ends


Left end : ACTAGAAGAACAAGGGTGAGTACCCCGCGCCACCGTGCGCGGGGGTGAAGCCCGACACTGGGTCAACCTATCAACCACAGACAATACCTTTACAAGACCG II struct. : Yes
Right end : TGACCCACGACACCGCTACAGGTCATCAAGCCGATGGTGTCGTGGGTGTGTCAGACTAATCCACGGGAAGCCACGGGCCACCGCGCCCGTGGCAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GATAAACCGGTGGTTCTATACGAACAAGCCGAGGCtcac

DNA sequence

ACTAGAAGAACAAGGGTGAGTACCCCGCGCCACCGTGCGCGGGGGTGAAGCCCGACACTGGGTCAACCTATCAACCACAGACAATACCTTTACAAGACCG
CAGTACGACGATTATTGTATGCAGAAGTCGCTGACCAAAACACTCGTCTTCCAACTCGACCCCGATGAGTCTGGTCAGCAACTTCTGGACGACGCCTTCC
TCGAAGCCCGGCGCGTGTACAACGAAACCATCCGCCGGACAAAGAACGGTGACGACTGGGACGAGATTCGGCAGGACTTGGAATCCGACGCCGATCTCGT
AAACAATACCGCGCAACTCGTCGTGCAGAAATCGCTGGAAGCGATGGAGAACTACTACGAGTACGACGACTACAACCAACCCAGTCACACGAAAGACGGC
GCGTACCCACTTCGGTCAAACTACGAGGAAGGCTACAACCTGTTCCTCGAAGACGACTCAATCCGCTACCGAATCAGTGCGAAGCCGTACAACCCAGTGA
AGGGTACGCTTCAGGGGTCGCTAGACGTGCTCAAACAACTCCGAACGGCCATCGAGTCCGAGACGTGGCGAGTCGGGACGGCGGAAGCGATGAAACGGAA
CGGGAACTACGAACTCCACATCAACATCACTCACACCGAGGCTGAAGTCCGAGACAAACAGGACTCACGCACAGTTGTTGGAGTGGACATCAACGAGGAC
TGCGTTGCACTCGCTTCACTCCACGAAGACGACATTGTTAACTCAGTTGTCATCGACTACCCGGAAATCAAGGAAGAACGTCATCGGTACTTCACGATGC
GGAAACGGATGCAGAACAGCGGGAAGTCGTCGTTCGACCGAGCGTTCGAGCAACAAGAAGAACGATTCGTTCACGACCAACTCCACAAAGTCTCTCGACA
AGTCGTGGAATGGGTGCCACGGTTCGAGAACCCCGTCATCGTCTTTGAAGACCTCAAAGAGATGCGGGACTCGATTGATTATGGCACCCGGATGAACCGC
CGCCTTCACAGTCTCCCATTCCGTAAACTTCGAGAGTTCATCACGTACAAAGCCGCGTTCCAAGGCATTCCGAGCGAGGAGATTAACCCCGAGTACACGA
GTCAGGCGTGTTCGCTCACCGAGTGTGAGCATACGACTCGTGCAAACCGAAACAAGAAGCGATTCAAGTGCGTGGAGTGTGGGCGGCAAGACCACGCCGA
CCGGAACGCGGCTATCAACATCGCCAAGAAAGGGTTGGAAAAACTGAATCGAAATGTGCCTGCTCTCAACAGCCTTCCACAAGTTCGGAAGGTGCGACGG
CAGGCATCGGGCTGTGTGAACCAGCCGACCGTGACCCACGACACCGCTACAGGTCATCAAGCCGATGGTGTCGTGGGTGTGTCAGACTAATCCACGGGAA
GCCACGGGCCACCGCGCCCGTGGCAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1272 bp423 aa1191390+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MQKSLTKTLVFQLDPDESGQQLLDDAFLEARRVYNETIRRTKNGDDWDEIRQDLESDADLVNNTAQLVVQKSLEAMENYYEYDDYNQPSHTKDGAYPLRS
NYEEGYNLFLEDDSIRYRISAKPYNPVKGTLQGSLDVLKQLRTAIESETWRVGTAEAMKRNGNYELHINITHTEAEVRDKQDSRTVVGVDINEDCVALAS
LHEDDIVNSVVIDYPEIKEERHRYFTMRKRMQNSGKSSFDRAFEQQEERFVHDQLHKVSRQVVEWVPRFENPVIVFEDLKEMRDSIDYGTRMNRRLHSLP
FRKLREFITYKAAFQGIPSEEINPEYTSQACSLTECEHTTRANRNKKRFKCVECGRQDHADRNAAINIAKKGLEKLNRNVPALNSLPQVRKVRRQASGCV
NQPTVTHDTATGHQADGVVGVSD

 

Blast result :
Comments
ISNph8 is 77% (ORFB) aa similar to ISHma7.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343