ISNph7

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 2020 bp

Ends


Left end : AGAGAAAGCAGGCAGAGTGCCTCGGGGCTTGACCCCGAGGGTGAATGCCGTAAGCTCCATTAGACGTGTTCAGTGCGTTCGATATACTGCTCAATCGTCT II struct. : Yes
Right end : ACCCACCACACCGAGAGAGGCCACCAGACCGATGGTGTGTCGGGTGTGTCCGACCAATCCACGGGAAGAAGCTCCGGGGCTTGACCCCGGAGCAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGCTTCCCGTCTCTACGCCGCATGACGCAGTCAC

DNA sequence

AGAGAAAGCAGGCAGAGTGCCTCGGGGCTTGACCCCGAGGGTGAATGCCGTAAGCTCCATTAGACGTGTTCAGTGCGTTCGATATACTGCTCAATCGTCT
GGCTAGATACTTCACCAGCCGTTCCGATGTAGTATGATTCTTCCCAGAATCCGCCACCCCACAAGTAGTTTTCCAAGAGGTGTTCGTGTTGCTGCCACAT
CTCTCTGGCCGTGATGCTCTTGATTTTTCGTGCAATCTTACTTGGAGAATATTTTGGATGTGCTGAAAGAAACAAGTGAACGTGGTCTGGCGAGATATGC
AATGAGGGTATTTCATAATTGTACTCGCCGCAAACGTCTTTGAACGATGCTTCTAACGACTGTTCTATCTCATCAAGCACTGAGTGACGGTACTGAGCGG
GATCGGAGATCCCGCGAGGTACGCAAATCTTCGATTTGCTTGACTTCGGACACCACACGAAGTGGTAATTGATGTTGTAAACCGTGTGATTTGACCGTGT
TTCGCCCATATCGGCTAGAGTCATGCCAAAAAATTAAGTATAAGCGTATCTAAGTATATACTGTAGAGATGACCAAACGCCTCACCGTAGACTTCGAGGA
CGATTTGTACAAGGAGTTCTCGAAGAAATGTATCGACGTTGAACGTCCGAAATCAGAAGTCGTGCGTGAACTTGTCCAAGACTGGGTAAACGACCAAGAA
TGACGCAGACACAGGCTCTCACCAAGACGCTCGTGTTTCCGCTTGACGTGCAGAGTGGCAACGAGAGCCTGCTTCACGACGCCCGCTTGGAGTGTCGCCG
CGTGTTCAACGAGGTGCTACGTCTCAACTACGACGGGTGGAACTGGGACAAGATAGAAAACGTTGTTGAGCAGAACGCTGACCTCGTGCAAAACACCGCA
CAGCGTATCATCGACAAAGCCTTTGACGCACTCGATAACTACTACGACTACGACGACTGGGGACGACCGTGGTACAAACACGAGACGTTCCCACTGCGGA
TGAACTACGGCGAAGGCTACAACCTCTTTCTCGAAGACGAAACGGTACGGTTCCGCATTTCAGCAAAGCCGTACAATCACGTCAAAGGCGAGCTTCGCGG
TACGCAAGACCAATTCGACCTGCTCAGACAAGCAATCGAAGATGATGACTGGCACGTTGGCACTGCTGAGGCGCTTGTCCGACACGGACGCGAAGAGTTG
CACGCCACCGTCACGAACGAAACTGCCGAAGTCGGTGCGAAAACAACGACAGAAACGGTCACCGGCGTCGATATTAACGAAGACTGTGTTGCGCTAGCGG
CACTGACTGAACACGGTATCGAAGATTCCGTCGTCATTGACTACCCAGAAATCAAGGAACAACGCCACCGGTACTTCACGATGCGGAAACGCATGCAGGA
AGCCGGACAGACCGGGTTTAACGATGTGTTCCGCGACAAGGAACAACAGTTCGTTCACGACCAGCTACACACGGTGTCACGGCGCGTAGTCGAGTGGATT
CAACGGTTCGACAGTCCTGTAATTGTCTTTGAAGACCTCAAGGACATGAGAGACGACATTGAGTACGGGACGCGAATGAACCGGCGACTCCATTCACTAC
CGTTCGCCAAACTGCGGGACTTCATCACGTACAAGGCCGCATGGCGCGGCATTCCGTCAGATGACGTTGACCCGGAGTACACCAGCCAACAGTGTCCGGT
CTGTGGACACACAGAACGGGCGAACCGTCACAAGAAACGGTTCAAGTGCTGTGAGTGCGAGCATCAAGACCACGCTGACCGTGGTGCTGGTATCAGTGTC
GCACAGAAATGGTTGAGAACACAAGAGGATAGAAATGTGCCTGCTCTCAACACACTCCCGCAGGTGCGGAAATGGGAGTTGCGACGGCAGGCATCGGGGC
CTGTGGACGGCCCGACCGTGACCCACCACACCGAGAGAGGCCACCAGACCGATGGTGTGTCGGGTGTGTCCGACCAATCCACGGGAAGAAGCTCCGGGGC
TTGACCCCGGAGCAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
450 bp149 aa50960-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MGETRSNHTVYNINYHFVWCPKSSKSKICVPRGISDPAQYRHSVLDEIEQSLEASFKDVCGEYNYEIPSLHISPDHVHLFLSAHPKYSPSKIARKIKSIT
AREMWQQHEHLLENYLWGGGFWEESYYIGTAGEVSSQTIEQYIERTEHV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1305 bp434 aa7002004+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTQTQALTKTLVFPLDVQSGNESLLHDARLECRRVFNEVLRLNYDGWNWDKIENVVEQNADLVQNTAQRIIDKAFDALDNYYDYDDWGRPWYKHETFPLR
MNYGEGYNLFLEDETVRFRISAKPYNHVKGELRGTQDQFDLLRQAIEDDDWHVGTAEALVRHGREELHATVTNETAEVGAKTTTETVTGVDINEDCVALA
ALTEHGIEDSVVIDYPEIKEQRHRYFTMRKRMQEAGQTGFNDVFRDKEQQFVHDQLHTVSRRVVEWIQRFDSPVIVFEDLKDMRDDIEYGTRMNRRLHSL
PFAKLRDFITYKAAWRGIPSDDVDPEYTSQQCPVCGHTERANRHKKRFKCCECEHQDHADRGAGISVAQKWLRTQEDRNVPALNTLPQVRKWELRRQASG
PVDGPTVTHHTERGHQTDGVSGVSDQSTGRSSGA

 

Blast result :
Comments
ISNph7 is 79% (ORFA : the transposase) and 74% (ORFB) aa similar to ISHma7.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005)
Genome Res. 15: 1336-1343