ISNph6

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1854 bp

Ends


Left end : ACGAAAAGCAGCGCGAGTTCCCCGCCCCACTGTGGGCGGGGGTGAAGCGCGTCACTCCGGCGCGTGTTCCGTTTCTTCGATATACCGTTCAACCACTTCC II struct. : Yes
Right end : GCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGCGCACGGCTGAGGGAACTACAAAAGCCTCGGGCCACCGTGCCCGAGGTTGTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ACTACGGCGGGTTCTAATACTGTTTGAATCCTGCCGGTTAc

DNA sequence

ACGAAAAGCAGCGCGAGTTCCCCGCCCCACTGTGGGCGGGGGTGAAGCGCGTCACTCCGGCGCGTGTTCCGTTTCTTCGATATACCGTTCAACCACTTCC
TCCGACACTGCTCCCGTCGTTCCCACGTAGTATCCGACCTTCCAAAATCCGCCACCCCAAAAATACGACTCTCGAATTTCGGGATACCGTTCCAGCAAGT
GCTTTCCAGAGTACGACTTGAACTGCCGAGCGATGTTCGCAGGGCTGTACTTTGAGTCTGTTTGCACGAACAGGTGTACGTGGTCGTCCGCAATCTCCAA
CGCCAGAATTTCGTGTCCGAAGTGGTCAGCAGTCTCATCAAACAATTCTCGAACATCGTCTTCAACTGCGTTGAGAATTTGATGGCGATACTTGCGACAC
CAGACGAAGTGATACTTGCAGGAACTAACTGAATGTGCATGACTACGGTATTCTTCCATCCCTAATCCTTACATTTATGATAGTCTGGAACGATTGTCAA
AAAGCATGGGTGAAGAAGCCACGAAGACGATTCAGACGCGCCTTCACATAGCGTCTGGCGAACGGTCGTGGCTTCACGACGCCCGCCTCGCATCACGCGA
GATTTTCAACGACACTATCCGCCTCACACAACGGGGATACACGCGCACCGAGATACAGAAGGAGGTTGACCGCGACGACTTCTTGCGGAACAACAAGTGC
GCGGTCGTCGGTAAAGCCCTCCAAACGTGGGACTCCTACCAGTCGCTCAAGGAGTGGTGGGAGAACCAAGACGACCCTGACGGCGGGGAGCCGACGCCAC
CGAGTACGGACAAATCTGGTGCATACCCGCTTGTGATGGCGCACACGGAAGGCTACCGCCTCACCGTTGACGACGACACGAACCGCATCCAGTTCCGCAT
CAGCCCGAAACCCTATAAGAAGGTGAAGGGTCATCTGCGCGGCGAGCCGGACGTGATGGAAGAACTTCGAGATGCCCTCACGTCGGACGAGCTGGATGTT
GGGCAGGCCGAACTCCTGTACCGCGATGGCGTGTACTACCTACACGTCACGGTCACACGCGAGTTCGACGTGCCCGAACCCGACACCGCCGATACGCTGG
TCGGCGTGGACATCAACGAGCGAAACGTCGCACTCACTGCCCTCGACCGCGAAACGATGCGGACGAAGGGGACGCTCGTCCTCGATTACGGACGAGTCAA
ACAGGAACGCCAACGCTACCACACGATTACGAAACGCTGTCAGGAACACGGCAAAACGAGCATCCACCACAGACTCGGTGACGAAGAAGAGCGATTCACC
GAGTGGGTGTTGCATCGTCTTTCCCGCGCTGTCGTGGAGTTCGCAGAGCAATTCTCGAACCCGGTTATCGTGTTCGAGGATATGAGCGGTATCCGTGACG
AAATCAAGTACGGGACGTATATGAACCGCCGGTTGCACAAACTGCCGTTCCACAAGTTCGAGACATTCGTCTCGTACAAGGCGACGTGGCGAGAGATTCC
GACGGACACAGTAGATGCCTACTACAACTCCCAGACGTGTTCGTGCTGCGGTGAGCGTGGGTATCGGCAGGGACGGCGGTTCCGATGTACGAACGACGAG
TGTGACGTGGTGCAAGACCACGCTGACCGCAATGCGTCGGTGACCATCGCATGGCGTGAGAAGGCGAAACTCGATGGGAACACAACGAATTACCGGACTC
ACAAAACCCAGCCACAGGTTCGGTTGGTGCGTCTGTCCGGGTCGGGGCGTGTAAGCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGC
GCACGGCTGAGGGAACTACAAAAGCCTCGGGCCACCGTGCCCGAGGTTGTTTAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
408 bp135 aa45952-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MEEYRSHAHSVSSCKYHFVWCRKYRHQILNAVEDDVRELFDETADHFGHEILALEIADDHVHLFVQTDSKYSPANIARQFKSYSGKHLLERYPEIRESYF
WGGGFWKVGYYVGTTGAVSEEVVERYIEETEHAPE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1305 bp434 aa5061810+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MGEEATKTIQTRLHIASGERSWLHDARLASREIFNDTIRLTQRGYTRTEIQKEVDRDDFLRNNKCAVVGKALQTWDSYQSLKEWWENQDDPDGGEPTPPS
TDKSGAYPLVMAHTEGYRLTVDDDTNRIQFRISPKPYKKVKGHLRGEPDVMEELRDALTSDELDVGQAELLYRDGVYYLHVTVTREFDVPEPDTADTLVG
VDINERNVALTALDRETMRTKGTLVLDYGRVKQERQRYHTITKRCQEHGKTSIHHRLGDEEERFTEWVLHRLSRAVVEFAEQFSNPVIVFEDMSGIRDEI
KYGTYMNRRLHKLPFHKFETFVSYKATWREIPTDTVDAYYNSQTCSCCGERGYRQGRRFRCTNDECDVVQDHADRNASVTIAWREKAKLDGNTTNYRTHK
TQPQVRLVRLSGSGRVSRPTSSRSLAEQGVLAHG

 

Blast result :
Comments
ISNph6 is 65% (ORFA : the transposase) and 57% (ORFB) aa similar to ISHma7.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343