ISNph6
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1854 bp
Ends
Left end : ACGAAAAGCAGCGCGAGTTCCCCGCCCCACTGTGGGCGGGGGTGAAGCGCGTCACTCCGGCGCGTGTTCCGTTTCTTCGATATACCGTTCAACCACTTCC II struct. : Yes
Right end : GCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGCGCACGGCTGAGGGAACTACAAAAGCCTCGGGCCACCGTGCCCGAGGTTGTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ACTACGGCGGGTT | CTAA | TACTGTTTGAATCCTGCCGG | TTAc |
DNA sequence
ACGAAAAGCAGCGCGAGTTCCCCGCCCCACTGTGGGCGGGGGTGAAGCGCGTCACTCCGGCGCGTGTTCCGTTTCTTCGATATACCGTTCAACCACTTCC
TCCGACACTGCTCCCGTCGTTCCCACGTAGTATCCGACCTTCCAAAATCCGCCACCCCAAAAATACGACTCTCGAATTTCGGGATACCGTTCCAGCAAGT
GCTTTCCAGAGTACGACTTGAACTGCCGAGCGATGTTCGCAGGGCTGTACTTTGAGTCTGTTTGCACGAACAGGTGTACGTGGTCGTCCGCAATCTCCAA
CGCCAGAATTTCGTGTCCGAAGTGGTCAGCAGTCTCATCAAACAATTCTCGAACATCGTCTTCAACTGCGTTGAGAATTTGATGGCGATACTTGCGACAC
CAGACGAAGTGATACTTGCAGGAACTAACTGAATGTGCATGACTACGGTATTCTTCCATCCCTAATCCTTACATTTATGATAGTCTGGAACGATTGTCAA
AAAGCATGGGTGAAGAAGCCACGAAGACGATTCAGACGCGCCTTCACATAGCGTCTGGCGAACGGTCGTGGCTTCACGACGCCCGCCTCGCATCACGCGA
GATTTTCAACGACACTATCCGCCTCACACAACGGGGATACACGCGCACCGAGATACAGAAGGAGGTTGACCGCGACGACTTCTTGCGGAACAACAAGTGC
GCGGTCGTCGGTAAAGCCCTCCAAACGTGGGACTCCTACCAGTCGCTCAAGGAGTGGTGGGAGAACCAAGACGACCCTGACGGCGGGGAGCCGACGCCAC
CGAGTACGGACAAATCTGGTGCATACCCGCTTGTGATGGCGCACACGGAAGGCTACCGCCTCACCGTTGACGACGACACGAACCGCATCCAGTTCCGCAT
CAGCCCGAAACCCTATAAGAAGGTGAAGGGTCATCTGCGCGGCGAGCCGGACGTGATGGAAGAACTTCGAGATGCCCTCACGTCGGACGAGCTGGATGTT
GGGCAGGCCGAACTCCTGTACCGCGATGGCGTGTACTACCTACACGTCACGGTCACACGCGAGTTCGACGTGCCCGAACCCGACACCGCCGATACGCTGG
TCGGCGTGGACATCAACGAGCGAAACGTCGCACTCACTGCCCTCGACCGCGAAACGATGCGGACGAAGGGGACGCTCGTCCTCGATTACGGACGAGTCAA
ACAGGAACGCCAACGCTACCACACGATTACGAAACGCTGTCAGGAACACGGCAAAACGAGCATCCACCACAGACTCGGTGACGAAGAAGAGCGATTCACC
GAGTGGGTGTTGCATCGTCTTTCCCGCGCTGTCGTGGAGTTCGCAGAGCAATTCTCGAACCCGGTTATCGTGTTCGAGGATATGAGCGGTATCCGTGACG
AAATCAAGTACGGGACGTATATGAACCGCCGGTTGCACAAACTGCCGTTCCACAAGTTCGAGACATTCGTCTCGTACAAGGCGACGTGGCGAGAGATTCC
GACGGACACAGTAGATGCCTACTACAACTCCCAGACGTGTTCGTGCTGCGGTGAGCGTGGGTATCGGCAGGGACGGCGGTTCCGATGTACGAACGACGAG
TGTGACGTGGTGCAAGACCACGCTGACCGCAATGCGTCGGTGACCATCGCATGGCGTGAGAAGGCGAAACTCGATGGGAACACAACGAATTACCGGACTC
ACAAAACCCAGCCACAGGTTCGGTTGGTGCGTCTGTCCGGGTCGGGGCGTGTAAGCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGC
GCACGGCTGAGGGAACTACAAAAGCCTCGGGCCACCGTGCCCGAGGTTGTTTAC
TCCGACACTGCTCCCGTCGTTCCCACGTAGTATCCGACCTTCCAAAATCCGCCACCCCAAAAATACGACTCTCGAATTTCGGGATACCGTTCCAGCAAGT
GCTTTCCAGAGTACGACTTGAACTGCCGAGCGATGTTCGCAGGGCTGTACTTTGAGTCTGTTTGCACGAACAGGTGTACGTGGTCGTCCGCAATCTCCAA
CGCCAGAATTTCGTGTCCGAAGTGGTCAGCAGTCTCATCAAACAATTCTCGAACATCGTCTTCAACTGCGTTGAGAATTTGATGGCGATACTTGCGACAC
CAGACGAAGTGATACTTGCAGGAACTAACTGAATGTGCATGACTACGGTATTCTTCCATCCCTAATCCTTACATTTATGATAGTCTGGAACGATTGTCAA
AAAGCATGGGTGAAGAAGCCACGAAGACGATTCAGACGCGCCTTCACATAGCGTCTGGCGAACGGTCGTGGCTTCACGACGCCCGCCTCGCATCACGCGA
GATTTTCAACGACACTATCCGCCTCACACAACGGGGATACACGCGCACCGAGATACAGAAGGAGGTTGACCGCGACGACTTCTTGCGGAACAACAAGTGC
GCGGTCGTCGGTAAAGCCCTCCAAACGTGGGACTCCTACCAGTCGCTCAAGGAGTGGTGGGAGAACCAAGACGACCCTGACGGCGGGGAGCCGACGCCAC
CGAGTACGGACAAATCTGGTGCATACCCGCTTGTGATGGCGCACACGGAAGGCTACCGCCTCACCGTTGACGACGACACGAACCGCATCCAGTTCCGCAT
CAGCCCGAAACCCTATAAGAAGGTGAAGGGTCATCTGCGCGGCGAGCCGGACGTGATGGAAGAACTTCGAGATGCCCTCACGTCGGACGAGCTGGATGTT
GGGCAGGCCGAACTCCTGTACCGCGATGGCGTGTACTACCTACACGTCACGGTCACACGCGAGTTCGACGTGCCCGAACCCGACACCGCCGATACGCTGG
TCGGCGTGGACATCAACGAGCGAAACGTCGCACTCACTGCCCTCGACCGCGAAACGATGCGGACGAAGGGGACGCTCGTCCTCGATTACGGACGAGTCAA
ACAGGAACGCCAACGCTACCACACGATTACGAAACGCTGTCAGGAACACGGCAAAACGAGCATCCACCACAGACTCGGTGACGAAGAAGAGCGATTCACC
GAGTGGGTGTTGCATCGTCTTTCCCGCGCTGTCGTGGAGTTCGCAGAGCAATTCTCGAACCCGGTTATCGTGTTCGAGGATATGAGCGGTATCCGTGACG
AAATCAAGTACGGGACGTATATGAACCGCCGGTTGCACAAACTGCCGTTCCACAAGTTCGAGACATTCGTCTCGTACAAGGCGACGTGGCGAGAGATTCC
GACGGACACAGTAGATGCCTACTACAACTCCCAGACGTGTTCGTGCTGCGGTGAGCGTGGGTATCGGCAGGGACGGCGGTTCCGATGTACGAACGACGAG
TGTGACGTGGTGCAAGACCACGCTGACCGCAATGCGTCGGTGACCATCGCATGGCGTGAGAAGGCGAAACTCGATGGGAACACAACGAATTACCGGACTC
ACAAAACCCAGCCACAGGTTCGGTTGGTGCGTCTGTCCGGGTCGGGGCGTGTAAGCCGCCCAACCTCATCCCGCTCGCTTGCCGAGCAGGGAGTGCTAGC
GCACGGCTGAGGGAACTACAAAAGCCTCGGGCCACCGTGCCCGAGGTTGTTTAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
408 bp | 135 aa | 459 | 52 | - | No |
Chemistry : Y1
ORF sequence :
MEEYRSHAHSVSSCKYHFVWCRKYRHQILNAVEDDVRELFDETADHFGHEILALEIADDHVHLFVQTDSKYSPANIARQFKSYSGKHLLERYPEIRESYF
WGGGFWKVGYYVGTTGAVSEEVVERYIEETEHAPE
WGGGFWKVGYYVGTTGAVSEEVVERYIEETEHAPE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 506 | 1810 | + | No |
AG : TnpB
ORF sequence :
MGEEATKTIQTRLHIASGERSWLHDARLASREIFNDTIRLTQRGYTRTEIQKEVDRDDFLRNNKCAVVGKALQTWDSYQSLKEWWENQDDPDGGEPTPPS
TDKSGAYPLVMAHTEGYRLTVDDDTNRIQFRISPKPYKKVKGHLRGEPDVMEELRDALTSDELDVGQAELLYRDGVYYLHVTVTREFDVPEPDTADTLVG
VDINERNVALTALDRETMRTKGTLVLDYGRVKQERQRYHTITKRCQEHGKTSIHHRLGDEEERFTEWVLHRLSRAVVEFAEQFSNPVIVFEDMSGIRDEI
KYGTYMNRRLHKLPFHKFETFVSYKATWREIPTDTVDAYYNSQTCSCCGERGYRQGRRFRCTNDECDVVQDHADRNASVTIAWREKAKLDGNTTNYRTHK
TQPQVRLVRLSGSGRVSRPTSSRSLAEQGVLAHG
TDKSGAYPLVMAHTEGYRLTVDDDTNRIQFRISPKPYKKVKGHLRGEPDVMEELRDALTSDELDVGQAELLYRDGVYYLHVTVTREFDVPEPDTADTLVG
VDINERNVALTALDRETMRTKGTLVLDYGRVKQERQRYHTITKRCQEHGKTSIHHRLGDEEERFTEWVLHRLSRAVVEFAEQFSNPVIVFEDMSGIRDEI
KYGTYMNRRLHKLPFHKFETFVSYKATWREIPTDTVDAYYNSQTCSCCGERGYRQGRRFRCTNDECDVVQDHADRNASVTIAWREKAKLDGNTTNYRTHK
TQPQVRLVRLSGSGRVSRPTSSRSLAEQGVLAHG
Blast result :
Comments
ISNph6 is 65% (ORFA : the transposase) and 57% (ORFB) aa similar to ISHma7.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343