ISShvi1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_014012 | ND | Shewanella violacea | Shewanella violacea DSS12 |
DNA section
IS Length : 1026 bp
Ends
IR Length : 16/26
IRL : GGCGCTGTTGTAGGGAAATGTTGTCTATACTTAATGATTGAGGGTAAAGG
IRR : GGCTATGTTCCATAATGCTGTTGTCTCCCATAAGCGGATAACAGTATTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTACCAACGC | AAAt/cATAt/g | ACGATTATTC | 8 |
TTTCTCGTGT | TTTTTATA | ATATCTATAG | 8 |
DNA sequence
GGCGCTGTTGTAGGGAAATGTTGTCTATACTTAATGATTGAGGGTAAAGGAAATGAAAGCAAAACTATTTGTGAGTAAACTTAACCAGCTAACCAAAGCA
CTTATCTCTATGACTCCAGCCCAGAGAGAGATTGTTCACCAGTCAATTCAAGCTTTAGATTCAGAAATCTCTATCGATGAACTTATTCAGCCCCTTTTTG
ATGCGAAATCGCAATGTCCACACTGCGATTCTAGTCAGTTCAAAAAATGGGGCAAAGCTGGGGGAATACAAAGATACCGCTGCAATAACTGTAGTAAAAC
ATTTAACAATAAGACTAAAACCCCGCTAGCGAGACTGCACAAGAGCCACATTTGGCAAGCGTATGCTCACTGTATGCAGTTAAGGTTAACACTGAGACAA
GCCGCTAAAATCTGTGACATTAACCTTAAGACCGCTTTTTTATGGCGCCATCGATTTCTTCAGGCTCAAGCGGGTAAAAATGATGACAAATTATCGGGCA
TTATCGAAGTTGATGAATTCTTTCTCGCCTACTCAGAAAAAGGGAGTAAAACACTGAGTTATCGGCAAAAAGCCAGAAATCGAGGTGGTAATATTGATAA
ACGAACTAAGAAAGGACAAGTTGCGATACTGCTTTCCATTGATCGCAGTAAACATATGATAGCGCCGATTTTATCTGCTAATACGTCTTCAGAGATAGCG
ATTAATCTGATAGACAATATAGAAGAAAACTCAGTACTTTGCAGCGACGGCTCATGGGCATATGTGAAGATAGCCGCACAGAAGGGATGTGACCATAAGC
GTTTGATAAATAATAAAATCAGAGTGATGGAGAATATCTATCATATTCAGACAGTCAATGGTGCAATAGCAAATTTTAAGGCTTGGATAAACGGAAGTAT
GAAGGGTGTGGCAACAAAATATTTATCACATTATCTAGCCTGGTTTAAGGAAAACAGCGCAAAGCTAGATAAACAGCAAATACTGTTATCCGCTTATGGG
AGACAACAGCATTATGGAACATAGCC
CTTATCTCTATGACTCCAGCCCAGAGAGAGATTGTTCACCAGTCAATTCAAGCTTTAGATTCAGAAATCTCTATCGATGAACTTATTCAGCCCCTTTTTG
ATGCGAAATCGCAATGTCCACACTGCGATTCTAGTCAGTTCAAAAAATGGGGCAAAGCTGGGGGAATACAAAGATACCGCTGCAATAACTGTAGTAAAAC
ATTTAACAATAAGACTAAAACCCCGCTAGCGAGACTGCACAAGAGCCACATTTGGCAAGCGTATGCTCACTGTATGCAGTTAAGGTTAACACTGAGACAA
GCCGCTAAAATCTGTGACATTAACCTTAAGACCGCTTTTTTATGGCGCCATCGATTTCTTCAGGCTCAAGCGGGTAAAAATGATGACAAATTATCGGGCA
TTATCGAAGTTGATGAATTCTTTCTCGCCTACTCAGAAAAAGGGAGTAAAACACTGAGTTATCGGCAAAAAGCCAGAAATCGAGGTGGTAATATTGATAA
ACGAACTAAGAAAGGACAAGTTGCGATACTGCTTTCCATTGATCGCAGTAAACATATGATAGCGCCGATTTTATCTGCTAATACGTCTTCAGAGATAGCG
ATTAATCTGATAGACAATATAGAAGAAAACTCAGTACTTTGCAGCGACGGCTCATGGGCATATGTGAAGATAGCCGCACAGAAGGGATGTGACCATAAGC
GTTTGATAAATAATAAAATCAGAGTGATGGAGAATATCTATCATATTCAGACAGTCAATGGTGCAATAGCAAATTTTAAGGCTTGGATAAACGGAAGTAT
GAAGGGTGTGGCAACAAAATATTTATCACATTATCTAGCCTGGTTTAAGGAAAACAGCGCAAAGCTAGATAAACAGCAAATACTGTTATCCGCTTATGGG
AGACAACAGCATTATGGAACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 53 | 1024 | + | No |
Chemistry : DDE
ORF sequence :
MKAKLFVSKLNQLTKALISMTPAQREIVHQSIQALDSEISIDELIQPLFDAKSQCPHCDSSQFKKWGKAGGIQRYRCNNCSKTFNNKTKTPLARLHKSHI
WQAYAHCMQLRLTLRQAAKICDINLKTAFLWRHRFLQAQAGKNDDKLSGIIEVDEFFLAYSEKGSKTLSYRQKARNRGGNIDKRTKKGQVAILLSIDRSK
HMIAPILSANTSSEIAINLIDNIEENSVLCSDGSWAYVKIAAQKGCDHKRLINNKIRVMENIYHIQTVNGAIANFKAWINGSMKGVATKYLSHYLAWFKE
NSAKLDKQQILLSAYGRQQHYGT
WQAYAHCMQLRLTLRQAAKICDINLKTAFLWRHRFLQAQAGKNDDKLSGIIEVDEFFLAYSEKGSKTLSYRQKARNRGGNIDKRTKKGQVAILLSIDRSK
HMIAPILSANTSSEIAINLIDNIEENSVLCSDGSWAYVKIAAQKGCDHKRLINNKIRVMENIYHIQTVNGAIANFKAWINGSMKGVATKYLSHYLAWFKE
NSAKLDKQQILLSAYGRQQHYGT
Blast result :
Comments
There are 2 copies of ISShvi1 encoded in the genome of Shewanella violaceae DSS12. The encoded transposase has 61% identity to that of ISPpr6.
References
1] Romine, M. F. (2010) Direct submission.