ISShvi1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_014012 ND Shewanella violacea
Shewanella violacea DSS12
DNA section
IS Length : 1026 bp

Ends


IR Length : 16/26

IRL : GGCGCTGTTGTAGGGAAATGTTGTCTATACTTAATGATTGAGGGTAAAGG
IRR : GGCTATGTTCCATAATGCTGTTGTCTCCCATAAGCGGATAACAGTATTTG

Insertion site


Left flankDirect repeatRight flankDR Length
CTACCAACGCAAAt/cATAt/gACGATTATTC8
TTTCTCGTGTTTTTTATAATATCTATAG8

DNA sequence

GGCGCTGTTGTAGGGAAATGTTGTCTATACTTAATGATTGAGGGTAAAGGAAATGAAAGCAAAACTATTTGTGAGTAAACTTAACCAGCTAACCAAAGCA
CTTATCTCTATGACTCCAGCCCAGAGAGAGATTGTTCACCAGTCAATTCAAGCTTTAGATTCAGAAATCTCTATCGATGAACTTATTCAGCCCCTTTTTG
ATGCGAAATCGCAATGTCCACACTGCGATTCTAGTCAGTTCAAAAAATGGGGCAAAGCTGGGGGAATACAAAGATACCGCTGCAATAACTGTAGTAAAAC
ATTTAACAATAAGACTAAAACCCCGCTAGCGAGACTGCACAAGAGCCACATTTGGCAAGCGTATGCTCACTGTATGCAGTTAAGGTTAACACTGAGACAA
GCCGCTAAAATCTGTGACATTAACCTTAAGACCGCTTTTTTATGGCGCCATCGATTTCTTCAGGCTCAAGCGGGTAAAAATGATGACAAATTATCGGGCA
TTATCGAAGTTGATGAATTCTTTCTCGCCTACTCAGAAAAAGGGAGTAAAACACTGAGTTATCGGCAAAAAGCCAGAAATCGAGGTGGTAATATTGATAA
ACGAACTAAGAAAGGACAAGTTGCGATACTGCTTTCCATTGATCGCAGTAAACATATGATAGCGCCGATTTTATCTGCTAATACGTCTTCAGAGATAGCG
ATTAATCTGATAGACAATATAGAAGAAAACTCAGTACTTTGCAGCGACGGCTCATGGGCATATGTGAAGATAGCCGCACAGAAGGGATGTGACCATAAGC
GTTTGATAAATAATAAAATCAGAGTGATGGAGAATATCTATCATATTCAGACAGTCAATGGTGCAATAGCAAATTTTAAGGCTTGGATAAACGGAAGTAT
GAAGGGTGTGGCAACAAAATATTTATCACATTATCTAGCCTGGTTTAAGGAAAACAGCGCAAAGCTAGATAAACAGCAAATACTGTTATCCGCTTATGGG
AGACAACAGCATTATGGAACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa531024+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKAKLFVSKLNQLTKALISMTPAQREIVHQSIQALDSEISIDELIQPLFDAKSQCPHCDSSQFKKWGKAGGIQRYRCNNCSKTFNNKTKTPLARLHKSHI
WQAYAHCMQLRLTLRQAAKICDINLKTAFLWRHRFLQAQAGKNDDKLSGIIEVDEFFLAYSEKGSKTLSYRQKARNRGGNIDKRTKKGQVAILLSIDRSK
HMIAPILSANTSSEIAINLIDNIEENSVLCSDGSWAYVKIAAQKGCDHKRLINNKIRVMENIYHIQTVNGAIANFKAWINGSMKGVATKYLSHYLAWFKE
NSAKLDKQQILLSAYGRQQHYGT

 

Blast result :
Comments
There are 2 copies of ISShvi1 encoded in the genome of Shewanella violaceae DSS12. The encoded transposase has 61% identity to that of ISPpr6.
References
1] Romine, M. F. (2010) Direct submission.