ISSba21
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AECY01000004 | ND | Shewanella baltica | Shewanella baltica OS183 |
DNA section
IS Length : 1050 bp
Ends
IR Length : 16/19
IRL : GGCGTTGTTGCACAAATCAGTGAACTAATCGGTGTTGCCATGATCAGATC
IRR : GGCGTTGTTGATTAAATCATTTCATAGAACGTAATCGTTCCAAGACTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGCATTATCA | ATTTGTATC | AACAAATGTT | 9 |
DNA sequence
GGCGTTGTTGCACAAATCAGTGAACTAATCGGTGTTGCCATGATCAGATCTTCTGACTCACCTTCAGGACGGCAACATGGGCAAATCAATACGTAAAATA
GTTAATTGGAAGCAATACAACCAAGCGTTAGTGAACCGTGGTTCGCTCACCTTCTGGGTGGATGAAGCTGCAGTAAAAGCGTGGTACTGCAATGAGCATC
ATGGCGGGCGTGGTCGCGGTTTTAGCTATAGTGATGTGGCGATTGAAACCGCGTTGATGATCAAAGGCATCTTTAATTTATCGTTGCGTGCGCTAGAAGG
CTTTCTCAACTCTTTGTTTACGTTGATGAATGTTCCACTAATATCACCTGATTACACCTCTATCAGTAAACGCGCTAAGACAGTCAATGTTCAGTACCGC
AACCCCAGTCGCGGACCGATAGCGCATGTTGTTGTCGATGCCACGGGCCTGAAAGTGTTTGGTGAAGGCAAATGGAAAACGCGCAAGCATGGCAGCGAAA
AACGCCGCACATGGCGCAAGTTGCACTTAGCCATAGATGCAAGCACTCACGAAGTCGTTGCAGCTGAAGTCAGTGTTGTGTCAGTAGGCGATAATGAAGT
ACTGCCGACTTTACTCAATCCTTTACGGCGAAAGATAACGCAGGTATCGGCAGATGGGGCTTATGATACAAAGGGTTGTTATCAATTACTGCGACGTAAA
GGCTGCAAAGCTACCATCCCACCGCGCTCAAATGCGGGGTTATGGGAAAAGGGGCATCCACGCAATGAAGCGGTAGAAGCACTGAAAGCGGGTCAGCTGA
AACAATGGAAAATCGATAACGGCTATCACCAGCGCTCTCTAGCAGAGACCGCCATGGGCCGATATAAACAGTTGAATAGTCCAATGCTAAGTTTACGTGA
TTACAATGGGCAAGTTGCAGAGGCATTGGCTGGTGTGAAGGCGATGAACAAAGTCATTAGACTGGGTATGGCCGTTCGCCAGCAAGTTGCTTATTCGGGC
AGAAGTCTTGGAACGATTACGTTCTATGAAATGATTTAATCAACAACGCC
GTTAATTGGAAGCAATACAACCAAGCGTTAGTGAACCGTGGTTCGCTCACCTTCTGGGTGGATGAAGCTGCAGTAAAAGCGTGGTACTGCAATGAGCATC
ATGGCGGGCGTGGTCGCGGTTTTAGCTATAGTGATGTGGCGATTGAAACCGCGTTGATGATCAAAGGCATCTTTAATTTATCGTTGCGTGCGCTAGAAGG
CTTTCTCAACTCTTTGTTTACGTTGATGAATGTTCCACTAATATCACCTGATTACACCTCTATCAGTAAACGCGCTAAGACAGTCAATGTTCAGTACCGC
AACCCCAGTCGCGGACCGATAGCGCATGTTGTTGTCGATGCCACGGGCCTGAAAGTGTTTGGTGAAGGCAAATGGAAAACGCGCAAGCATGGCAGCGAAA
AACGCCGCACATGGCGCAAGTTGCACTTAGCCATAGATGCAAGCACTCACGAAGTCGTTGCAGCTGAAGTCAGTGTTGTGTCAGTAGGCGATAATGAAGT
ACTGCCGACTTTACTCAATCCTTTACGGCGAAAGATAACGCAGGTATCGGCAGATGGGGCTTATGATACAAAGGGTTGTTATCAATTACTGCGACGTAAA
GGCTGCAAAGCTACCATCCCACCGCGCTCAAATGCGGGGTTATGGGAAAAGGGGCATCCACGCAATGAAGCGGTAGAAGCACTGAAAGCGGGTCAGCTGA
AACAATGGAAAATCGATAACGGCTATCACCAGCGCTCTCTAGCAGAGACCGCCATGGGCCGATATAAACAGTTGAATAGTCCAATGCTAAGTTTACGTGA
TTACAATGGGCAAGTTGCAGAGGCATTGGCTGGTGTGAAGGCGATGAACAAAGTCATTAGACTGGGTATGGCCGTTCGCCAGCAAGTTGCTTATTCGGGC
AGAAGTCTTGGAACGATTACGTTCTATGAAATGATTTAATCAACAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 77 | 1039 | + | No |
Chemistry : DDE
ORF sequence :
MGKSIRKIVNWKQYNQALVNRGSLTFWVDEAAVKAWYCNEHHGGRGRGFSYSDVAIETALMIKGIFNLSLRALEGFLNSLFTLMNVPLISPDYTSISKRA
KTVNVQYRNPSRGPIAHVVVDATGLKVFGEGKWKTRKHGSEKRRTWRKLHLAIDASTHEVVAAEVSVVSVGDNEVLPTLLNPLRRKITQVSADGAYDTKG
CYQLLRRKGCKATIPPRSNAGLWEKGHPRNEAVEALKAGQLKQWKIDNGYHQRSLAETAMGRYKQLNSPMLSLRDYNGQVAEALAGVKAMNKVIRLGMAV
RQQVAYSGRSLGTITFYEMI
KTVNVQYRNPSRGPIAHVVVDATGLKVFGEGKWKTRKHGSEKRRTWRKLHLAIDASTHEVVAAEVSVVSVGDNEVLPTLLNPLRRKITQVSADGAYDTKG
CYQLLRRKGCKATIPPRSNAGLWEKGHPRNEAVEALKAGQLKQWKIDNGYHQRSLAETAMGRYKQLNSPMLSLRDYNGQVAEALAGVKAMNKVIRLGMAV
RQQVAYSGRSLGTITFYEMI
Blast result :
Comments
ISSba21 is 87% aa similar to ISSpu14.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Goodwin,L., Pitluck,S., Land,M.L., Hauser,L., Chang,Y.-J., Jeffries,C., Tiedje,J., Hofle,M., Brettar,I., Konstantinidis,K., Deng,J., Auchtung,J. and Woyke,T.J. (2010) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Goodwin,L., Pitluck,S., Land,M.L., Hauser,L., Chang,Y.-J., Jeffries,C., Tiedje,J., Hofle,M., Brettar,I., Konstantinidis,K., Deng,J., Auchtung,J. and Woyke,T.J. (2010) Direct submission GenBank.