ISSba21

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AECY01000004 ND Shewanella baltica
Shewanella baltica OS183
DNA section
IS Length : 1050 bp

Ends


IR Length : 16/19

IRL : GGCGTTGTTGCACAAATCAGTGAACTAATCGGTGTTGCCATGATCAGATC
IRR : GGCGTTGTTGATTAAATCATTTCATAGAACGTAATCGTTCCAAGACTTCT

Insertion site


Left flankDirect repeatRight flankDR Length
TGGCATTATCAATTTGTATCAACAAATGTT9

DNA sequence

GGCGTTGTTGCACAAATCAGTGAACTAATCGGTGTTGCCATGATCAGATCTTCTGACTCACCTTCAGGACGGCAACATGGGCAAATCAATACGTAAAATA
GTTAATTGGAAGCAATACAACCAAGCGTTAGTGAACCGTGGTTCGCTCACCTTCTGGGTGGATGAAGCTGCAGTAAAAGCGTGGTACTGCAATGAGCATC
ATGGCGGGCGTGGTCGCGGTTTTAGCTATAGTGATGTGGCGATTGAAACCGCGTTGATGATCAAAGGCATCTTTAATTTATCGTTGCGTGCGCTAGAAGG
CTTTCTCAACTCTTTGTTTACGTTGATGAATGTTCCACTAATATCACCTGATTACACCTCTATCAGTAAACGCGCTAAGACAGTCAATGTTCAGTACCGC
AACCCCAGTCGCGGACCGATAGCGCATGTTGTTGTCGATGCCACGGGCCTGAAAGTGTTTGGTGAAGGCAAATGGAAAACGCGCAAGCATGGCAGCGAAA
AACGCCGCACATGGCGCAAGTTGCACTTAGCCATAGATGCAAGCACTCACGAAGTCGTTGCAGCTGAAGTCAGTGTTGTGTCAGTAGGCGATAATGAAGT
ACTGCCGACTTTACTCAATCCTTTACGGCGAAAGATAACGCAGGTATCGGCAGATGGGGCTTATGATACAAAGGGTTGTTATCAATTACTGCGACGTAAA
GGCTGCAAAGCTACCATCCCACCGCGCTCAAATGCGGGGTTATGGGAAAAGGGGCATCCACGCAATGAAGCGGTAGAAGCACTGAAAGCGGGTCAGCTGA
AACAATGGAAAATCGATAACGGCTATCACCAGCGCTCTCTAGCAGAGACCGCCATGGGCCGATATAAACAGTTGAATAGTCCAATGCTAAGTTTACGTGA
TTACAATGGGCAAGTTGCAGAGGCATTGGCTGGTGTGAAGGCGATGAACAAAGTCATTAGACTGGGTATGGCCGTTCGCCAGCAAGTTGCTTATTCGGGC
AGAAGTCTTGGAACGATTACGTTCTATGAAATGATTTAATCAACAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa771039+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGKSIRKIVNWKQYNQALVNRGSLTFWVDEAAVKAWYCNEHHGGRGRGFSYSDVAIETALMIKGIFNLSLRALEGFLNSLFTLMNVPLISPDYTSISKRA
KTVNVQYRNPSRGPIAHVVVDATGLKVFGEGKWKTRKHGSEKRRTWRKLHLAIDASTHEVVAAEVSVVSVGDNEVLPTLLNPLRRKITQVSADGAYDTKG
CYQLLRRKGCKATIPPRSNAGLWEKGHPRNEAVEALKAGQLKQWKIDNGYHQRSLAETAMGRYKQLNSPMLSLRDYNGQVAEALAGVKAMNKVIRLGMAV
RQQVAYSGRSLGTITFYEMI

 

Blast result :
Comments
ISSba21 is 87% aa similar to ISSpu14.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Goodwin,L., Pitluck,S., Land,M.L., Hauser,L., Chang,Y.-J., Jeffries,C., Tiedje,J., Hofle,M., Brettar,I., Konstantinidis,K., Deng,J., Auchtung,J. and Woyke,T.J. (2010) Direct submission GenBank.