ISRta5

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010529 ND Cupriavidus taiwanensis
Cupriavidus taiwanensis plasmid pRALTA
DNA section
IS Length : 1130 bp

Ends


IR Length : 18

IRL : GGCGTTGTTGCATAAATCCGGGGTCGGTTGGGCTGACGTTTACGCGCAAC
IRR : GGCGTTGTTGCATAAATCGAGATTGAAAACAGGGGCTCCTCGGTGAGGCT

Insertion site


Left flankDirect repeatRight flankDR Length
AATATCGACAACAACTGGTCGTGATCAAA8

DNA sequence

GGCGTTGTTGCATAAATCCGGGGTCGGTTGGGCTGACGTTTACGCGCAACGGCTGGAACGCTGGCTCTGTTAACTTCTGACGATGCGGCGTAGTGTCTTG
GATTTTTTCCGGGACGATGCGCAAGGACAACCGACAGCAAGCCGAGCCCAAGGGGGTCTACCGCGTCAAGAACTGGGCGCAGTACAACAAGGGGCTGATA
GCCCGAGGAGACGTGACGATGTGGGTCGAAGAGAGCTTGCTCGTGCCACCGGCTAAAGCCCAGTCGCCCAAGCGTGGCCACCCGCTCGTCTATACGGATG
CGCTGATCCAGGGTCTGCTCGGTCTCAAGCAGGTGTTCCACCTGCCGCTGCGCGCGCTGCAAGGCTTCGCGCAGAGCTTGCGCACCCTGGCCTTCCCAAC
ATTGCCAGTGCCGAACTACACGACATTGAGCCGCCGCGCGCAAAATCTGAACGTCGTGCTGCCCGCCTCTCGTACCGGCGAGTCGCTGCATCTGGTGATC
GACAGCACTGGACTGAAGCTTTACGGCGACGGCGAGTGGAAGGTTCGCAAGCACGGTTGGTCCAAGCGCCGGACTTGGCGCAAGGTCCATCTCGCCATGG
ACGCGAACACCGGCCAAATCCGTGCCGCGCTGATGACCCATCAGGACGTTGGCGATGGCGAAGTGTTGGCCGACCTGCTCGATCAAATCCCCGCTGATAC
ACCGATCGATACCATCGGAGGCGACGGCGCTTACGACAGCAAGCCGTGCCACGCGGCGATTGCCGCGCGGGATGCACAGCCCTCGATTCCACCACGCGAT
GGAGCGAAGCCATGGTCCGAAAGTACGCCGGGTGCAGCCTGGCGTAACGAGGCCATCGATGTCATCGAGAAGAGCAGTCGACGCGAATGGAAAGCCGCCA
GCGGCTATCACCGGCGCTCGCTGGCAGAGACCCTGATGTACCGCCTCAAGACGCTGACGGGACACAGTCTGTGGGCACGCGAAATCGGGTCGCAGGCCAC
CGAAGTGGCCATCCGTGCGGGCGTGCTCAACCGCATGGTCGCGCTCGCTCGCCCGCAATCCGTCTGTATCGCCTGAGTTCAGCCTCACCGAGGAGCCCCT
GTTTTCAATCTCGATTTATGCAACAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
960 bp319 aa1171076+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKDNRQQAEPKGVYRVKNWAQYNKGLIARGDVTMWVEESLLVPPAKAQSPKRGHPLVYTDALIQGLLGLKQVFHLPLRALQGFAQSLRTLAFPTLPVPN
YTTLSRRAQNLNVVLPASRTGESLHLVIDSTGLKLYGDGEWKVRKHGWSKRRTWRKVHLAMDANTGQIRAALMTHQDVGDGEVLADLLDQIPADTPIDTI
GGDGAYDSKPCHAAIAARDAQPSIPPRDGAKPWSESTPGAAWRNEAIDVIEKSSRREWKAASGYHRRSLAETLMYRLKTLTGHSLWAREIGSQATEVAIR
AGVLNRMVALARPQSVCIA

 

Blast result :
Comments
ISRta5 is 85% aa similar to IS1420.
References
1] ISfinder annotation (2010)
2] Amadou,C., Pascal,G., Mangenot,S., Glew,M., Bontemps,C., Capela,D., Carrere,S., Cruveiller,S., Dossat,C., Lajus,A., Marchetti,M., Poinsot,V., Rouy,Z., Servin,B., Saad,M., Schenowitz,C., Barbe,V., Batut,J., Medigue,C. and Masson-Boivin,C. (2008) Genome Res. 18 (9), 1472-1483