ISRta5
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010529 | ND | Cupriavidus taiwanensis | Cupriavidus taiwanensis plasmid pRALTA |
DNA section
IS Length : 1130 bp
Ends
IR Length : 18
IRL : GGCGTTGTTGCATAAATCCGGGGTCGGTTGGGCTGACGTTTACGCGCAAC
IRR : GGCGTTGTTGCATAAATCGAGATTGAAAACAGGGGCTCCTCGGTGAGGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATATCGACA | ACAACTGG | TCGTGATCAAA | 8 |
DNA sequence
GGCGTTGTTGCATAAATCCGGGGTCGGTTGGGCTGACGTTTACGCGCAACGGCTGGAACGCTGGCTCTGTTAACTTCTGACGATGCGGCGTAGTGTCTTG
GATTTTTTCCGGGACGATGCGCAAGGACAACCGACAGCAAGCCGAGCCCAAGGGGGTCTACCGCGTCAAGAACTGGGCGCAGTACAACAAGGGGCTGATA
GCCCGAGGAGACGTGACGATGTGGGTCGAAGAGAGCTTGCTCGTGCCACCGGCTAAAGCCCAGTCGCCCAAGCGTGGCCACCCGCTCGTCTATACGGATG
CGCTGATCCAGGGTCTGCTCGGTCTCAAGCAGGTGTTCCACCTGCCGCTGCGCGCGCTGCAAGGCTTCGCGCAGAGCTTGCGCACCCTGGCCTTCCCAAC
ATTGCCAGTGCCGAACTACACGACATTGAGCCGCCGCGCGCAAAATCTGAACGTCGTGCTGCCCGCCTCTCGTACCGGCGAGTCGCTGCATCTGGTGATC
GACAGCACTGGACTGAAGCTTTACGGCGACGGCGAGTGGAAGGTTCGCAAGCACGGTTGGTCCAAGCGCCGGACTTGGCGCAAGGTCCATCTCGCCATGG
ACGCGAACACCGGCCAAATCCGTGCCGCGCTGATGACCCATCAGGACGTTGGCGATGGCGAAGTGTTGGCCGACCTGCTCGATCAAATCCCCGCTGATAC
ACCGATCGATACCATCGGAGGCGACGGCGCTTACGACAGCAAGCCGTGCCACGCGGCGATTGCCGCGCGGGATGCACAGCCCTCGATTCCACCACGCGAT
GGAGCGAAGCCATGGTCCGAAAGTACGCCGGGTGCAGCCTGGCGTAACGAGGCCATCGATGTCATCGAGAAGAGCAGTCGACGCGAATGGAAAGCCGCCA
GCGGCTATCACCGGCGCTCGCTGGCAGAGACCCTGATGTACCGCCTCAAGACGCTGACGGGACACAGTCTGTGGGCACGCGAAATCGGGTCGCAGGCCAC
CGAAGTGGCCATCCGTGCGGGCGTGCTCAACCGCATGGTCGCGCTCGCTCGCCCGCAATCCGTCTGTATCGCCTGAGTTCAGCCTCACCGAGGAGCCCCT
GTTTTCAATCTCGATTTATGCAACAACGCC
GATTTTTTCCGGGACGATGCGCAAGGACAACCGACAGCAAGCCGAGCCCAAGGGGGTCTACCGCGTCAAGAACTGGGCGCAGTACAACAAGGGGCTGATA
GCCCGAGGAGACGTGACGATGTGGGTCGAAGAGAGCTTGCTCGTGCCACCGGCTAAAGCCCAGTCGCCCAAGCGTGGCCACCCGCTCGTCTATACGGATG
CGCTGATCCAGGGTCTGCTCGGTCTCAAGCAGGTGTTCCACCTGCCGCTGCGCGCGCTGCAAGGCTTCGCGCAGAGCTTGCGCACCCTGGCCTTCCCAAC
ATTGCCAGTGCCGAACTACACGACATTGAGCCGCCGCGCGCAAAATCTGAACGTCGTGCTGCCCGCCTCTCGTACCGGCGAGTCGCTGCATCTGGTGATC
GACAGCACTGGACTGAAGCTTTACGGCGACGGCGAGTGGAAGGTTCGCAAGCACGGTTGGTCCAAGCGCCGGACTTGGCGCAAGGTCCATCTCGCCATGG
ACGCGAACACCGGCCAAATCCGTGCCGCGCTGATGACCCATCAGGACGTTGGCGATGGCGAAGTGTTGGCCGACCTGCTCGATCAAATCCCCGCTGATAC
ACCGATCGATACCATCGGAGGCGACGGCGCTTACGACAGCAAGCCGTGCCACGCGGCGATTGCCGCGCGGGATGCACAGCCCTCGATTCCACCACGCGAT
GGAGCGAAGCCATGGTCCGAAAGTACGCCGGGTGCAGCCTGGCGTAACGAGGCCATCGATGTCATCGAGAAGAGCAGTCGACGCGAATGGAAAGCCGCCA
GCGGCTATCACCGGCGCTCGCTGGCAGAGACCCTGATGTACCGCCTCAAGACGCTGACGGGACACAGTCTGTGGGCACGCGAAATCGGGTCGCAGGCCAC
CGAAGTGGCCATCCGTGCGGGCGTGCTCAACCGCATGGTCGCGCTCGCTCGCCCGCAATCCGTCTGTATCGCCTGAGTTCAGCCTCACCGAGGAGCCCCT
GTTTTCAATCTCGATTTATGCAACAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
960 bp | 319 aa | 117 | 1076 | + | No |
Chemistry : DDE
ORF sequence :
MRKDNRQQAEPKGVYRVKNWAQYNKGLIARGDVTMWVEESLLVPPAKAQSPKRGHPLVYTDALIQGLLGLKQVFHLPLRALQGFAQSLRTLAFPTLPVPN
YTTLSRRAQNLNVVLPASRTGESLHLVIDSTGLKLYGDGEWKVRKHGWSKRRTWRKVHLAMDANTGQIRAALMTHQDVGDGEVLADLLDQIPADTPIDTI
GGDGAYDSKPCHAAIAARDAQPSIPPRDGAKPWSESTPGAAWRNEAIDVIEKSSRREWKAASGYHRRSLAETLMYRLKTLTGHSLWAREIGSQATEVAIR
AGVLNRMVALARPQSVCIA
YTTLSRRAQNLNVVLPASRTGESLHLVIDSTGLKLYGDGEWKVRKHGWSKRRTWRKVHLAMDANTGQIRAALMTHQDVGDGEVLADLLDQIPADTPIDTI
GGDGAYDSKPCHAAIAARDAQPSIPPRDGAKPWSESTPGAAWRNEAIDVIEKSSRREWKAASGYHRRSLAETLMYRLKTLTGHSLWAREIGSQATEVAIR
AGVLNRMVALARPQSVCIA
Blast result :
Comments
ISRta5 is 85% aa similar to IS1420.
References
1] ISfinder annotation (2010)
2] Amadou,C., Pascal,G., Mangenot,S., Glew,M., Bontemps,C., Capela,D., Carrere,S., Cruveiller,S., Dossat,C., Lajus,A., Marchetti,M., Poinsot,V., Rouy,Z., Servin,B., Saad,M., Schenowitz,C., Barbe,V., Batut,J., Medigue,C. and Masson-Boivin,C. (2008) Genome Res. 18 (9), 1472-1483
2] Amadou,C., Pascal,G., Mangenot,S., Glew,M., Bontemps,C., Capela,D., Carrere,S., Cruveiller,S., Dossat,C., Lajus,A., Marchetti,M., Poinsot,V., Rouy,Z., Servin,B., Saad,M., Schenowitz,C., Barbe,V., Batut,J., Medigue,C. and Masson-Boivin,C. (2008) Genome Res. 18 (9), 1472-1483