ISLlo3
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ACZG01000003 | ND | Legionella longbeachae | Legionella longbeachae D-4968 |
DNA section
IS Length : 1119 bp
Ends
IR Length : 15/18
IRL : GGCTTTGTTTCCTAACCCAATAAATAACCAACTTTCGGGGCGACTTATTA
IRR : GCGTTGTTTCCTAACCCCATGCCCTGGAGACTTATTCAAAATTTAGGCAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAACCGTAC | GCTTGGGAGG | 0 |
DNA sequence
GGCTTTGTTTCCTAACCCAATAAATAACCAACTTTCGGGGCGACTTATTATTAATACTATTATGTTGACCATTAGAAACCACCCTATAGTGCCAAGTAAA
TGCCCGATAAATATGCCAAGAAAAAAGGGTGGAATGTACCCAAGCAAAAATATAAATTAAGAAATTGGTCTGAATACAATGACGCATTAATGCGTCGTGG
CGATATCACCATTCGGTTGTCTGCTGATGCGGTCGCCCAGTGGTATGAACGGGAGCGAGTTTATGATGGTACAGGTACTCCAAGACGTTTCACTGATTTT
GCGATTATCGCCTGTCATGAAATACGCCAGGTATATAGATTACCTTTGCGGCAACCCCAAGGATTTATAAATTCTCTATTTCGGTTAATGGGGTTTCCTC
TTTCCTGCCCTAATTTCAGTTGCATAAGTAAGCGGTTAAAAGAGTTAAAAATCAAAGTACCGAAGTATAAAAAAACAGATAAGCCTCTGGATAGAGTACA
TGCTATAGCTATTGACTCCACTGGGTTAAAGCGCTTCGAACGTGGCGAATGGCACCAGGAAAAGTATGAGCTATCCAGCAAAGCCAGTTGGTGTAAACTT
CACGTGGGTGTTAATCAAAATCATTACTTTGAAGCCTGTGAATTAACGGACCGATTCACTCACGATGACCAGCTAGTTAAACTATTGCTTGCGCAAATTA
ATGAACCAATTGACCATTTTTCAGGTGATGGTGCTTATGATGAAGCACCTATTTATGACGCTCTATTTGCCCACTTACCTAACGTGGATGTGCTCATTCC
TCCCCGTAGTAACGCAGTTTTAAGTGATAATTCAGCGACCATGAGAAATCGAAACATTCAAGAAATCAATGACCATGGCAGAATGCAGTGGCAGAAACAG
AGGGAATATGGTCGAAGAAACTACTCGGAGCTTGGCGTGCAGCGGTATCAAAAAATACTGGGGGATTCACTACATGTCAGAGAGATAACTAGTCAAAAAC
AAGAGGCGATAATTGGCTGTGGCGTGATCAATAAAATGACCTCATTGGGAATCCCTGAAAGCTACAGATCTGCCTAAATTTTGAATAAGTCTCCAGGGCA
TGGGGTTAGGAAACAACGC
TGCCCGATAAATATGCCAAGAAAAAAGGGTGGAATGTACCCAAGCAAAAATATAAATTAAGAAATTGGTCTGAATACAATGACGCATTAATGCGTCGTGG
CGATATCACCATTCGGTTGTCTGCTGATGCGGTCGCCCAGTGGTATGAACGGGAGCGAGTTTATGATGGTACAGGTACTCCAAGACGTTTCACTGATTTT
GCGATTATCGCCTGTCATGAAATACGCCAGGTATATAGATTACCTTTGCGGCAACCCCAAGGATTTATAAATTCTCTATTTCGGTTAATGGGGTTTCCTC
TTTCCTGCCCTAATTTCAGTTGCATAAGTAAGCGGTTAAAAGAGTTAAAAATCAAAGTACCGAAGTATAAAAAAACAGATAAGCCTCTGGATAGAGTACA
TGCTATAGCTATTGACTCCACTGGGTTAAAGCGCTTCGAACGTGGCGAATGGCACCAGGAAAAGTATGAGCTATCCAGCAAAGCCAGTTGGTGTAAACTT
CACGTGGGTGTTAATCAAAATCATTACTTTGAAGCCTGTGAATTAACGGACCGATTCACTCACGATGACCAGCTAGTTAAACTATTGCTTGCGCAAATTA
ATGAACCAATTGACCATTTTTCAGGTGATGGTGCTTATGATGAAGCACCTATTTATGACGCTCTATTTGCCCACTTACCTAACGTGGATGTGCTCATTCC
TCCCCGTAGTAACGCAGTTTTAAGTGATAATTCAGCGACCATGAGAAATCGAAACATTCAAGAAATCAATGACCATGGCAGAATGCAGTGGCAGAAACAG
AGGGAATATGGTCGAAGAAACTACTCGGAGCTTGGCGTGCAGCGGTATCAAAAAATACTGGGGGATTCACTACATGTCAGAGAGATAACTAGTCAAAAAC
AAGAGGCGATAATTGGCTGTGGCGTGATCAATAAAATGACCTCATTGGGAATCCCTGAAAGCTACAGATCTGCCTAAATTTTGAATAAGTCTCCAGGGCA
TGGGGTTAGGAAACAACGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 100 | 1077 | + | No |
Chemistry : DDE
ORF sequence :
MPDKYAKKKGWNVPKQKYKLRNWSEYNDALMRRGDITIRLSADAVAQWYERERVYDGTGTPRRFTDFAIIACHEIRQVYRLPLRQPQGFINSLFRLMGFP
LSCPNFSCISKRLKELKIKVPKYKKTDKPLDRVHAIAIDSTGLKRFERGEWHQEKYELSSKASWCKLHVGVNQNHYFEACELTDRFTHDDQLVKLLLAQI
NEPIDHFSGDGAYDEAPIYDALFAHLPNVDVLIPPRSNAVLSDNSATMRNRNIQEINDHGRMQWQKQREYGRRNYSELGVQRYQKILGDSLHVREITSQK
QEAIIGCGVINKMTSLGIPESYRSA
LSCPNFSCISKRLKELKIKVPKYKKTDKPLDRVHAIAIDSTGLKRFERGEWHQEKYELSSKASWCKLHVGVNQNHYFEACELTDRFTHDDQLVKLLLAQI
NEPIDHFSGDGAYDEAPIYDALFAHLPNVDVLIPPRSNAVLSDNSATMRNRNIQEINDHGRMQWQKQREYGRRNYSELGVQRYQKILGDSLHVREITSQK
QEAIIGCGVINKMTSLGIPESYRSA
Blast result :
Comments
ISLlo3 is 59% aa similar to ISAli17.
References
1] ISfinder annotation (2010)
2] Kozak,N.A., Buss,M., Frace,M., Govil,D., Lucas,C.E., Travis,T., Olsen-Rasmussen,M., Benson,R.F. and Fields,B.S. (2009) Direct submission GenBank.
2] Kozak,N.A., Buss,M., Frace,M., Govil,D., Lucas,C.E., Travis,T., Olsen-Rasmussen,M., Benson,R.F. and Fields,B.S. (2009) Direct submission GenBank.