ISLlo3

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ACZG01000003 ND Legionella longbeachae
Legionella longbeachae D-4968
DNA section
IS Length : 1119 bp

Ends


IR Length : 15/18

IRL : GGCTTTGTTTCCTAACCCAATAAATAACCAACTTTCGGGGCGACTTATTA
IRR : GCGTTGTTTCCTAACCCCATGCCCTGGAGACTTATTCAAAATTTAGGCAG

Insertion site


Left flankDirect repeatRight flankDR Length
ATAACCGTACGCTTGGGAGG0

DNA sequence

GGCTTTGTTTCCTAACCCAATAAATAACCAACTTTCGGGGCGACTTATTATTAATACTATTATGTTGACCATTAGAAACCACCCTATAGTGCCAAGTAAA
TGCCCGATAAATATGCCAAGAAAAAAGGGTGGAATGTACCCAAGCAAAAATATAAATTAAGAAATTGGTCTGAATACAATGACGCATTAATGCGTCGTGG
CGATATCACCATTCGGTTGTCTGCTGATGCGGTCGCCCAGTGGTATGAACGGGAGCGAGTTTATGATGGTACAGGTACTCCAAGACGTTTCACTGATTTT
GCGATTATCGCCTGTCATGAAATACGCCAGGTATATAGATTACCTTTGCGGCAACCCCAAGGATTTATAAATTCTCTATTTCGGTTAATGGGGTTTCCTC
TTTCCTGCCCTAATTTCAGTTGCATAAGTAAGCGGTTAAAAGAGTTAAAAATCAAAGTACCGAAGTATAAAAAAACAGATAAGCCTCTGGATAGAGTACA
TGCTATAGCTATTGACTCCACTGGGTTAAAGCGCTTCGAACGTGGCGAATGGCACCAGGAAAAGTATGAGCTATCCAGCAAAGCCAGTTGGTGTAAACTT
CACGTGGGTGTTAATCAAAATCATTACTTTGAAGCCTGTGAATTAACGGACCGATTCACTCACGATGACCAGCTAGTTAAACTATTGCTTGCGCAAATTA
ATGAACCAATTGACCATTTTTCAGGTGATGGTGCTTATGATGAAGCACCTATTTATGACGCTCTATTTGCCCACTTACCTAACGTGGATGTGCTCATTCC
TCCCCGTAGTAACGCAGTTTTAAGTGATAATTCAGCGACCATGAGAAATCGAAACATTCAAGAAATCAATGACCATGGCAGAATGCAGTGGCAGAAACAG
AGGGAATATGGTCGAAGAAACTACTCGGAGCTTGGCGTGCAGCGGTATCAAAAAATACTGGGGGATTCACTACATGTCAGAGAGATAACTAGTCAAAAAC
AAGAGGCGATAATTGGCTGTGGCGTGATCAATAAAATGACCTCATTGGGAATCCCTGAAAGCTACAGATCTGCCTAAATTTTGAATAAGTCTCCAGGGCA
TGGGGTTAGGAAACAACGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa1001077+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPDKYAKKKGWNVPKQKYKLRNWSEYNDALMRRGDITIRLSADAVAQWYERERVYDGTGTPRRFTDFAIIACHEIRQVYRLPLRQPQGFINSLFRLMGFP
LSCPNFSCISKRLKELKIKVPKYKKTDKPLDRVHAIAIDSTGLKRFERGEWHQEKYELSSKASWCKLHVGVNQNHYFEACELTDRFTHDDQLVKLLLAQI
NEPIDHFSGDGAYDEAPIYDALFAHLPNVDVLIPPRSNAVLSDNSATMRNRNIQEINDHGRMQWQKQREYGRRNYSELGVQRYQKILGDSLHVREITSQK
QEAIIGCGVINKMTSLGIPESYRSA

 

Blast result :
Comments
ISLlo3 is 59% aa similar to ISAli17.
References
1] ISfinder annotation (2010)
2] Kozak,N.A., Buss,M., Frace,M., Govil,D., Lucas,C.E., Travis,T., Olsen-Rasmussen,M., Benson,R.F. and Fields,B.S. (2009) Direct submission GenBank.