ISfinder Mirror Site

ISHysp1

Family IS5
Group IS903

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NZ_ABHJ01000001	ND	Hydrogenivirga sp.	Hydrogenivirga sp. 128-5-R1-1

DNA section

IS Length : 1014 bp

Ends

IR Length : 13/15

IRL : TGCTTTGTCTAAAAAGCCCTACCCATTAGAATAAAGACCCATGAGCAGGG
IRR : TGCTCTGTCCAAAAATAGCTTTAGATACTCCCTGTTCTTTGCATCTTCCC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
AAGTTGTTTA	GAGTGGC	ATGAAAATTA	7
AAACATTATA	TTTCTAAAG	TTTTGCATCT	9
ACTATATCCT		GTATGAAGTC	0

DNA sequence

TGCTTTGTCTAAAAAGCCCTACCCATTAGAATAAAGACCCATGAGCAGGGACTGGAGCAAATACAACGGAGAGCTTGTAAAGAGGGGTGAAATACTCATA
GACTCCATGAGCTTTGGTCTAAAAGCTAAGAGTGAGAGGAATAGAAATACAGGTAGACCGCCGGTGTATTCAGACCACCTCATCTTGATGCTCCTCTTCA
TAAAGTTCGCCCTGAAACTCCCATACAGACAAACCCAGGGACTCGCTAAAAAGCTCTTCCAAAACTCAGGCTTGAAAATCCCTGACTTCAGGACTCTACA
CTACAGATTCAAAACCATGGAAATAAACATTAAAGACTTCCCAGACCCGGAAGACCTGCCAGATGACTTCGTAATAGTCCTTGACTCCACGGGCATAAAG
GTTACCAACAGAGGGGAATGGCTCAGGAAGAAGCATGGCAAGAGGGCAAGGAAAGGATGGATAAAACTACACGTAGCCTTTGACCTCAAAAGGAAGAAGG
TAGTGGAGATAGAGGTAACGGACGAGAGAGTCCATGACAGTCAGAAAGCTAAAAAGCTTGTAGAAGGTGCTAAGAGGGAGGCAAAGGACAAGGGCAAGAA
AGTGAGCAAGGTTGTGGCTGATAGCGGATACGACACACATGAGTTTTTCAGGTATTTGCATGATGAGGGTATATGTGCGGGAGTGCTTGTGAGGAAGGGG
GCGAAGGTAAGGGGAAATCCATTGAGGGATGAAGTGGTAAGGGCTATAAGGAGGGGGAAGAGGCGATGGAAGGAAAGAATAGAGTATGGCAAGAGGTGGC
TTGTGGAGAATTTCTTCTCAGTATTCAAGCGATGGTTTGGGGAGTATGTAGTGAGTTTGAAGTTTGAGAATATGAAGAAGGAACTGGTGTTCAAGGTAGG
GATAATGAATATGCTTATGATGGCAGGGGTGGTATGAACATGAGCCTGTCCGCATATGTGAAAGGGGAAGATGCAAAGAACAGGGAGTATCTAAAGCTAT
TTTTGGACAGAGCA

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
897 bp	298 aa	41	937	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRDWSKYNGELVKRGEILIDSMSFGLKAKSERNRNTGRPPVYSDHLILMLLFIKFALKLPYRQTQGLAKKLFQNSGLKIPDFRTLHYRFKTMEINIKDF
PDPEDLPDDFVIVLDSTGIKVTNRGEWLRKKHGKRARKGWIKLHVAFDLKRKKVVEIEVTDERVHDSQKAKKLVEGAKREAKDKGKKVSKVVADSGYDTH
EFFRYLHDEGICAGVLVRKGAKVRGNPLRDEVVRAIRRGKRRWKERIEYGKRWLVENFFSVFKRWFGEYVVSLKFENMKKELVFKVGIMNMLMMAGVV

Blast result :

Comments

ISHysp1 is 51% aa similar to ISFac2.

References

1] ISfinder annotation (2010)
2] Reysenbach,A.-L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.